Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 10, 2006, Pages 3846-3851

  Biddle, Jennifer F ^a   Lipp, Julius S ^b   Lever, Mark A ^c   Lloyd, Karen G ^c   Sørensen, Ketil B ^c   Anderson, Rika ^b,d   Fredricks, Helen F ^e   Elvert, Marcus ^b   Kelly, Timothy J ^a   Schrag, Daniel P ^f   Sogin, Mitchell L ^g   Brenchley, Jean E ^a   Teske, Andreas ^c   House, Christopher H ^a   Hinrichs, Kai Uwe ^b,e  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF BREMEN   (Germany)

^c University of North Carolina at Chapel Hill   (United States)

^d CARLETON COLLEGE   (United States)

^e WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

^f HARVARD UNIVERSITY   (United States)

^g MARINE BIOLOGICAL LABORATORY   (United States)

Author keywords

Anaerobic methanotrophy; Deep biosphere; FISH secondary ion MS; Intact polar lipids; Stable carbon isotopes

Indexed keywords

BACTERIAL RNA; CARBON; METHANE; SULFATE;

ANAEROBIC METABOLISM; ARCHAEBACTERIUM; ARTICLE; BACTERIAL CELL; BENTHOS; BIOGEOCHEMICAL CYCLING; CARBON CYCLE; CELL COUNT; CRENARCHAEOTA; ECOSYSTEM; METHANOTROPHIC BACTERIUM; MICROFLORA; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PERU; PRIORITY JOURNAL; PROKARYOTE; SEDIMENT;

ANAEROBIOSIS; ARCHAEA; CARBON; ECOSYSTEM; ENERGY METABOLISM; GEOLOGIC SEDIMENTS; LIPIDS; MARINE BIOLOGY; MOLECULAR SEQUENCE DATA; PERU; PHYLOGENY; RNA, ARCHAEAL; RNA, RIBOSOMAL, 16S;

ARCHAEA; BACTERIA (MICROORGANISMS); CRENARCHAEOTA; PROKARYOTA;

EID: 33644821142     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0600035103     Document Type: Article

References (43)

1. Parkes, R. J., Cragg, B. A. & Wellsbury, P. (2000) Hydrogeol. J. 8, 11-28.
2. Whitman, W. B., Coleman, D. C. & Wiebe, W. J. (1998) Proc. Natl. Acad. Sci. USA 95, 6578-6583.
3. D'Hondt, S., Rutherford, S. & Spivack, A. J. (2002) Science 295, 2067-2070.
4. Iversen, N. & Jørgensen, B. B. (1985) Limnol Oceanogr. 30, 944-955.
5. Hinrichs, K.-U. & Boetius, A. (2002) in Ocean Margin Systems, eds. Wefer G., Billet, D., Hebbeln, D., Jørgensen, B. B., Schlüter, M. & van Weering, T. (Springer, Berlin), pp. 457-477.
6. D'Hondt, S. L., Jørgensen, B. B., Miller, D. J. & Shipboard Scientific Party (2003) Proceedings of the Ocean Drilling Program: Initial Reports (Ocean Drilling Program, Texas A & M University, College Station, TX), Vol. 201.
7. D'Hondt, S. L., Jørgensen, B. B., Miller, D. J., Batzke, A., Blake, R., Cragg, B. A., Cypionka, H., Dickens, G. R., Ferdelman, T., Hinrichs, K.-U., et al. (2004) Science 306, 2216-2221.
8. Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M., Lauer, A., Suzuki, M., Takai, K., Delwiche, M., Colwell, F. S., et al. (2006) Proc. Natl. Acad. Sci. USA 103, 2815-2820.
9. Mauclaire, L., Zepp, K., Meister, P. & McKenzie, J. (2005) Geobiology 2, 217-223.
10. Parkes, R. J., Webster, G., Cragg, B. A., Weightman, A. J., Newberry, C. J., Ferdelman, T. G., Kallmeyer, J., Jørgensen, B. B., Aiello, I., W. & Fry, J. C. (2005) Nature 436, 390-394.
11. Schippers, A., Neretin, L. N., Kallmeyer, J., Ferdelman, T. G., Cragg, B. A., Parkes, R. J. & Jørgensen, B. B. (2005) Nature 433, 861-864.
12. Inagaki, F., Okada, H., Tsapin, A. I. & Nealson, K. H. (2005) Astrobiology 5, 141-153.
13. Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K. H. & Horikoshi, K. (2003) Appl. Environ. Microbiol. 69, 7224-7235.
14. Coolen, M. J. L., Cypionka, H., Sass, H. & Overmann, J. (2002) Science 296, 2407-2410.
15. Orphan, V. J., Hinrichs, K.-U., Ussler, W., III, Paull, C. K., Taylor, L. T., Sylva, S. P., Hayes, J. M. & Delong, E. F. (2001) Appl. Environ. Microbiol. 67, 1922-1934.
16. Sturt, H. F., Summons, R. E., Smith, K., Elvert, M. & Hinrichs, K.-U. (2004) Rapid Commun. Mass Spectrom. 18, 617-628.
17. Sinninghe Damsté, J. S., Schouten, S., Hopmans, E. C., Van Duin, A. C. T. & Geenevasen, J. A. J. (2002) J. Lipid Res. 43, 1641-1651.
18. Amann, R. I., Zarda, B., Stahl, D. A. & Schleifer, K. (1992) Appl. Environ. Microbiol. 58, 3007-3011.
19. Hayes, J. M. (2001) Rev. Mineral. Geochem. 43, 1-31.
20. Hinrichs, K.-U., Hayes, J. M., Sylva, S. P., Brewer, P. G. & DeLong, E. F. (1999) Nature 398, 802-805.
21. Orphan, V. J., House, C. H., Hinrichs, K.-U., McKeegan, K. D. & DeLong, E. F. (2001) Science 293, 484-487.
22. House, C. H., Schopf, J. W. & Stetter, K. O. (2003) Org. Geochem. 34, 345-356.
23. Summons, R. E., Franzmann, P. D. & Nichols, P. D. (1998) Org. Geochem. 28, 465-476.
24. Lin, L.-H., Hall, J, Lippmann-Pipke, J., Ward, J. A., Sherwood Lollar, B., DeFlaun, M., Rothmel, R., Moser, D., Gihring, T. M., Mislowack, B., et al. (2005). Geochem. Geophys. Geosyst. 6, 007003.
25. Blair, C., D'Hondt, S. & Spivack, A. J. (2005) Astrobiology 5, 250.
26. Stevens, T. O. & McKinley, J. P. (1995) Science 270, 450-454.
27. Schulz, H. D. (2000) in Marine Geochemistry, eds. Schulz, H. D. & Zabel, M. (Springer, Berlin), pp. 85-128.
28. Middelburg, J. J. (1989) Geochim. Cosmochim. Acta 53, 1577-1581.
29. Zengler, K., Richnow, H. H., Rossello-Mora, R., Michaelis, W. & Widdel, F. (1999) Nature 401, 266-269,
30. Tijhuis, L., Van Loosdrecht, M. C. M. & Heijnen, J. J. (1993) Biotechnol. Bioeng. 42, 509-519.
31. Scholten, J. C. M. & Conrad, R. (2000) Appl. Environ. Microbiol. 66, 2934-2942.
32. del Giorgio, P. A. & Cole, J. J. (1998) Ann. Rev. Ecol Syst. 29, 503-541.
33. Harder, J. (1997) FEMS Microbiol. Ecol. 23, 39-44.
34. Boone, D. R., Whitman, W. B. & Koga, Y. (2001) in Bergey's Manual of Systematic Bacteriology, eds. Boone, D. R. & Castenholz, R. W. (Springer, New York), Vol. 1, pp. 246-267.
35. Boone, D. R., Whitman, W. B. & Koga, Y. (2001) in Bergey's Manual of Systematic Bacteriology, eds. Boone, D. R. & Castenholz, R. W. (Springer, New York), Vol. 1, pp. 268-294.
36. Karner, M. B., DeLong, E. F. & Karl, D. M. (2001) Nature 409, 507-510.
37. Amann, R. I., Binder, B. J., Olson, A. J., Chisholm, S. W., Devereux, R. & Stahl, D. A. (1990) Appl. Environ. Microbiol. 56, 1919-1925.
38. Stahl, D. A. & Amann, R. (1991) in Sequencing and Hybridization Techniques in Bacterial Systematics, eds. Stackebrandt, E. & Goodfellow, M. (Wiley, Chichester, U.K.), pp. 205-248.
39. DeLong, E. F., King, L. L., Massana, R., Cittone, H., Murray, A. E., Schleper, C. & Wakeham, S. G. (1998) Appl. Environ. Microbiol. 64, 1133-1138.
40. MacGregor, B. J., Moser, D. P., Aim, E. W., Nealson, K. H. & Stahl, D. A. (1997) Appl. Environ. Microbiol. 63, 1178-1181.
41. Stahl, D. A., Flesher, B., Mansfield, H. R. & Montgomery L. (1988) Appl. Environ. Microbiol. 54, 1079-1084.
42. Teske, A., Hinrichs, K.-U., Edgcomb, V., de Vera Gomez, A., Kysela, D., Sylva, S. P., Sogin, M. L. & Jannasch, H. W. (2002) Appl. Environ. Microbiol. 68, 1994-2007.
43. DeLong, E. F. (1992) Proc. Natl. Acad. Sci. USA 89, 5685-5689.