-
1
-
-
33645359473
-
Comparison of nitrifier activity versus growth in the Scheldt estuary - A turbid, tidal estuary in northern Europe
-
Andersson MGI, Brion N Middelburg JJ (2006a) Comparison of nitrifier activity versus growth in the Scheldt estuary - a turbid, tidal estuary in northern Europe. Aquat Microb Ecol 42 : 149 158.
-
(2006)
Aquat Microb Ecol
, vol.42
, pp. 149-158
-
-
Andersson, M.G.I.1
Brion, N.2
Middelburg, J.J.3
-
2
-
-
33750956945
-
Uptake of dissolved inorganic nitrogen, urea and amino acids in the Scheldt estuary: Comparison of organic carbon and nitrogen uptake
-
Andersson MGI, van Rijswijk P Middelburg JJ (2006b) Uptake of dissolved inorganic nitrogen, urea and amino acids in the Scheldt estuary: comparison of organic carbon and nitrogen uptake. Aquat Microb Ecol 44 : 303 315.
-
(2006)
Aquat Microb Ecol
, vol.44
, pp. 303-315
-
-
Andersson, M.G.I.1
Van Rijswijk, P.2
Middelburg, J.J.3
-
3
-
-
0042197522
-
Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
-
Avrahami S, Liesack W Conrad R (2003) Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ Microbiol 5 : 691 705.
-
(2003)
Environ Microbiol
, vol.5
, pp. 691-705
-
-
Avrahami, S.1
Liesack, W.2
Conrad, R.3
-
4
-
-
33845520639
-
Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico
-
Beman JM Francis CA (2006) Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tobari, Mexico. Appl Environ Microbiol 72 : 7767 7777.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7767-7777
-
-
Beman, J.M.1
Francis, C.A.2
-
5
-
-
23944433934
-
Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system
-
Bernhard AE, Donn T, Giblin AE Stahl DA (2005) Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ Microbiol 7 : 1289 1297.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1289-1297
-
-
Bernhard, A.E.1
Donn, T.2
Giblin, A.E.3
Stahl, D.A.4
-
6
-
-
34248562001
-
Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient
-
Bernhard AE, Tucker J, Giblin AE Stahl DA (2007) Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ Microbiol 9 : 1439 1447.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1439-1447
-
-
Bernhard, A.E.1
Tucker, J.2
Giblin, A.E.3
Stahl, D.A.4
-
7
-
-
0037173750
-
Influence of oxygen partial pressure and salinity on the community composition of ammonia-oxidizing bacteria in the Schelde estuary
-
Bollmann A Laanbroek HJ (2002) Influence of oxygen partial pressure and salinity on the community composition of ammonia-oxidizing bacteria in the Schelde estuary. Aquat Microb Ecol 28 : 239 247.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 239-247
-
-
Bollmann, A.1
Laanbroek, H.J.2
-
8
-
-
85017213039
-
Distribution of nitrifying activity in the Seine River (France) from Paris to the estuary
-
Brion N, Billen G, Guezennec L Ficht A (2000) Distribution of nitrifying activity in the Seine River (France) from Paris to the estuary. Estuaries 23 : 669 682.
-
(2000)
Estuaries
, vol.23
, pp. 669-682
-
-
Brion, N.1
Billen, G.2
Guezennec, L.3
Ficht, A.4
-
9
-
-
0030024243
-
Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
-
Cilia V, Lafay B Christen R (1996) Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol Biol and Evol 13 : 451 461.
-
(1996)
Mol Biol and Evol
, vol.13
, pp. 451-461
-
-
Cilia, V.1
Lafay, B.2
Christen, R.3
-
11
-
-
22044444428
-
Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment
-
Coci M, Riechmann D, Bodelier PLE, Stefani S, Zwart G Laanbroek HJ (2005) Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment. FEMS Microbiol Ecol 53 : 359 368.
-
(2005)
FEMS Microbiol Ecol
, vol.53
, pp. 359-368
-
-
Coci, M.1
Riechmann, D.2
Bodelier, P.L.E.3
Stefani, S.4
Zwart, G.5
Laanbroek, H.J.6
-
12
-
-
4444222910
-
Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: Response of methanogens and methanotrophs to environmental change
-
Coolen MJL, Hopmans EC, Rijpstra WIC, Muyzer G, Schouten S, Volkman JK Damste JSS (2004) Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental change. Org Geochem 35 : 1151 1167.
-
(2004)
Org Geochem
, vol.35
, pp. 1151-1167
-
-
Coolen, M.J.L.1
Hopmans, E.C.2
Rijpstra, W.I.C.3
Muyzer, G.4
Schouten, S.5
Volkman, J.K.6
Damste, J.S.S.7
-
13
-
-
0035961637
-
Shifts in the dominant populations of ammonia-oxidizing beta-subclass Proteobacteria along the eutrophic Schelde estuary
-
de Bie MJM, Speksnijder A, Kowalchuk GA, Schuurman T, Zwart G, Stephen JR, Diekmann OE Laanbroek HJ (2001) Shifts in the dominant populations of ammonia-oxidizing beta-subclass Proteobacteria along the eutrophic Schelde estuary. Aquat Microb Ecol 23 : 225 236.
-
(2001)
Aquat Microb Ecol
, vol.23
, pp. 225-236
-
-
De Bie, M.J.M.1
Speksnijder, A.2
Kowalchuk, G.A.3
Schuurman, T.4
Zwart, G.5
Stephen, J.R.6
Diekmann, O.E.7
Laanbroek, H.J.8
-
14
-
-
0037139637
-
Grazing on intertidal microphytobenthos by macrofauna: Is pheophorbide a useful marker?
-
Ford RB Honeywill C (2002) Grazing on intertidal microphytobenthos by macrofauna: is pheophorbide a useful marker? Mar Ecol Prog Ser 229 : 33 42.
-
(2002)
Mar Ecol Prog Ser
, vol.229
, pp. 33-42
-
-
Ford, R.B.1
Honeywill, C.2
-
15
-
-
33646809027
-
Biodiversity-ecosystem function relationship in microphytobenthic diatoms of the Westerschelde estuary
-
Forster RM, Créach V, Sabbe K, Vyverman W Stal LJ (2006) Biodiversity-ecosystem function relationship in microphytobenthic diatoms of the Westerschelde estuary. Mar Ecol Prog Ser 311 : 191 201.
-
(2006)
Mar Ecol Prog Ser
, vol.311
, pp. 191-201
-
-
Forster, R.M.1
Créach, V.2
Sabbe, K.3
Vyverman, W.4
Stal, L.J.5
-
16
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis CA, Roberts KJ, Beman JM, Santoro AE Oakley BB (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102 : 14683 14688.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
17
-
-
0035721839
-
Lower Seine River and Estuary (France) carbon and oxygen budgets during low flow
-
Garnier J, Servais P, Billen G, Akopian M Brion N (2001) Lower Seine River and Estuary (France) carbon and oxygen budgets during low flow. Estuaries 24 : 964 976.
-
(2001)
Estuaries
, vol.24
, pp. 964-976
-
-
Garnier, J.1
Servais, P.2
Billen, G.3
Akopian, M.4
Brion, N.5
-
19
-
-
0027184336
-
The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
-
Head IM, Hiorns WD, Embley TM, McCarthy AJ Saunders JR (1993) The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. J Gen Microbiol 139 : 1147 1153.
-
(1993)
J Gen Microbiol
, vol.139
, pp. 1147-1153
-
-
Head, I.M.1
Hiorns, W.D.2
Embley, T.M.3
McCarthy, A.J.4
Saunders, J.R.5
-
20
-
-
0033673830
-
A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the β-subdivision of the class proteobacteria in contaminated groundwater
-
Ivanova IA, Stephen JR, Chang YJ, Brüggemann J, Long PE, McKinley JP, Kowalchuk GA, White DC Macnaughton SJ (2000) A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the β-subdivision of the class proteobacteria in contaminated groundwater. Can J Microbiol 46 : 1012 1020.
-
(2000)
Can J Microbiol
, vol.46
, pp. 1012-1020
-
-
Ivanova, I.A.1
Stephen, J.R.2
Chang, Y.J.3
Brüggemann, J.4
Long, P.E.5
McKinley, J.P.6
Kowalchuk, G.A.7
White, D.C.8
MacNaughton, S.J.9
-
21
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner MB, DeLong EF Karl DM (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409 : 507 510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
Delong, E.F.2
Karl, D.M.3
-
22
-
-
0036735091
-
The influence of ammonium, nitrate, and dissolved oxygen concentrations on uptake, nitrification, and denitrification rates associated with prairie stream substrata
-
Kemp MJ Dodds WK (2002) The influence of ammonium, nitrate, and dissolved oxygen concentrations on uptake, nitrification, and denitrification rates associated with prairie stream substrata. Limnol Oceanogr 47 : 1380 1393.
-
(2002)
Limnol Oceanogr
, vol.47
, pp. 1380-1393
-
-
Kemp, M.J.1
Dodds, W.K.2
-
23
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Konneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB Stahl DA (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437 : 543 546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
24
-
-
0030901922
-
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
-
Kowalchuk GA, Stephen JR, DeBoer W, Prosser JI, Embley TM Woldendorp JW (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63 : 1489 1497.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1489-1497
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
Deboer, W.3
Prosser, J.I.4
Embley, T.M.5
Woldendorp, J.W.6
-
25
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinfor 5 : 150 163.
-
(2004)
Brief Bioinfor
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
28
-
-
4143115643
-
Analysis of structural and physiological profiles to assess the effects of Cu on biofilm microbial communities
-
Massieux B, Boivin MEY, van den Ende FP, Langenskiold J, Marvan P, Barranguet C, Admiraal W, Laanbroek HJ Zwart G (2004) Analysis of structural and physiological profiles to assess the effects of Cu on biofilm microbial communities. Appl Environ Microbiol 70 : 4512 4521.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4512-4521
-
-
Massieux, B.1
Boivin, M.E.Y.2
Van Den Ende, F.P.3
Langenskiold, J.4
Marvan, P.5
Barranguet, C.6
Admiraal, W.7
Laanbroek, H.J.8
Zwart, G.9
-
29
-
-
0031814110
-
Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica
-
Murray AE, Preston CM, Massana R, Taylor LT, Blakis A, Wu K DeLong EF (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl Environ Microbiol 64 : 2585 2595.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2585-2595
-
-
Murray, A.E.1
Preston, C.M.2
Massana, R.3
Taylor, L.T.4
Blakis, A.5
Wu, K.6
Delong, E.F.7
-
30
-
-
0033572102
-
A time series assessment of planktonic archaeal variability in the Santa Barbara Channel
-
Murray AE, Blakis A, Massana R, Strawzewski S, Passow U, Alldredge A DeLong EF (1999) A time series assessment of planktonic archaeal variability in the Santa Barbara Channel. Aquat Microb Ecol 20 : 129 145.
-
(1999)
Aquat Microb Ecol
, vol.20
, pp. 129-145
-
-
Murray, A.E.1
Blakis, A.2
Massana, R.3
Strawzewski, S.4
Passow, U.5
Alldredge, A.6
Delong, E.F.7
-
31
-
-
0036242855
-
Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
-
Nicolaisen MH Ramsing NB (2002) Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J Microbiol Meth 50 : 189 203.
-
(2002)
J Microbiol Meth
, vol.50
, pp. 189-203
-
-
Nicolaisen, M.H.1
Ramsing, N.B.2
-
32
-
-
0034466757
-
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
-
Purkhold U, Pommerening-Roser A, Juretschko S, Schmid MC, Koops HP Wagner M (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66 : 5368 5382.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Roser, A.2
Juretschko, S.3
Schmid, M.C.4
Koops, H.P.5
Wagner, M.6
-
33
-
-
0037702845
-
Effects of UVB radiation and salt stress on growth, pigments and antioxidative defence of the marine diatom Cylindrotheca closterium
-
Rijstenbil JW (2003) Effects of UVB radiation and salt stress on growth, pigments and antioxidative defence of the marine diatom Cylindrotheca closterium. Mar Ecol Prog Ser 254 : 37 47.
-
(2003)
Mar Ecol Prog Ser
, vol.254
, pp. 37-47
-
-
Rijstenbil, J.W.1
-
34
-
-
0030814870
-
The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
-
Rotthauwe JH, Witzel KP Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63 : 4704 4712.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4704-4712
-
-
Rotthauwe, J.H.1
Witzel, K.P.2
Liesack, W.3
-
35
-
-
0024190240
-
Denitrification in freshwater and coastal marine ecosystems: Ecological and geochemical significance
-
Seitzinger SP (1988) Denitrification in freshwater and coastal marine ecosystems: ecological and geochemical significance. Limnol Oceanogr 33 : 702 724.
-
(1988)
Limnol Oceanogr
, vol.33
, pp. 702-724
-
-
Seitzinger, S.P.1
-
36
-
-
0342347131
-
Carbon flows in the Westerschelde Estuary (the Netherlands) evaluated by means of an ecosystem model (Moses)
-
Soetaert K Hernan PMJ (1995) Carbon flows in the Westerschelde Estuary (the Netherlands) evaluated by means of an ecosystem model (Moses). Hydrobiologia 311 : 247 266.
-
(1995)
Hydrobiologia
, vol.311
, pp. 247-266
-
-
Soetaert, K.1
Hernan, P.M.J.2
-
37
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk HP Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7 : 1985 1995.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kletzin, A.3
Schuster, S.C.4
Klenk, H.P.5
Schleper, C.6
-
38
-
-
33645459365
-
Characterization and quantification of ammonia-oxidizing bacteria in eutrophic coastal marine sediments using polyphasic molecular approaches and immunofluorescence staining
-
Urakawa H, Kurata S, Fujiwara T et al 2006) Characterization and quantification of ammonia-oxidizing bacteria in eutrophic coastal marine sediments using polyphasic molecular approaches and immunofluorescence staining. Environ Microbiol 8 : 787 803.
-
(2006)
Environ Microbiol
, vol.8
, pp. 787-803
-
-
Urakawa, H.1
Kurata, S.2
Fujiwara, T.3
Al, E.4
-
39
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF et al 2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304 : 66 74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Al, E.4
|