-
1
-
-
33751430435
-
Building oligonucleotide therapeutics using non-natural chemistries
-
Wilson, C. and Keefe, A. D. (2006) Building oligonucleotide therapeutics using non-natural chemistries. Curr. Opin. Chem. Biol., 10, 607-614.
-
(2006)
Curr. Opin. Chem. Biol.
, vol.10
, pp. 607-614
-
-
Wilson, C.1
Keefe, A.D.2
-
2
-
-
0032077477
-
Advantages of 2-O-methyl oligoribonucleotide probes for detecting RNA targets
-
Majlessi, M., Nelson, N. C. and Becker, M. M. (1998) Advantages of 2-O-methyl oligoribonucleotide probes for detecting RNA targets. Nucleic Acids Res., 26, 2224-2229.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2224-2229
-
-
Majlessi, M.1
Nelson, N.C.2
Becker, M.M.3
-
3
-
-
1942533474
-
In vivo activity of nuclease-resistant siRNAs
-
Layzer, J. M. (2004) In vivo activity of nuclease-resistant siRNAs. RNA, 10, 766-771.
-
(2004)
RNA
, vol.10
, pp. 766-771
-
-
Layzer, J.M.1
-
4
-
-
29844452007
-
Small interfering RNAs containing full 2-O-methylribonucleotide-modified sense strands display Argonaute2/eIF2C2-dependent activity
-
Kraynack, B. A. and Baker, B. F. (2006) Small interfering RNAs containing full 2-O-methylribonucleotide-modified sense strands display Argonaute2/eIF2C2-dependent activity. RNA, 12, 163-176.
-
(2006)
RNA
, vol.12
, pp. 163-176
-
-
Kraynack, B.A.1
Baker, B.F.2
-
5
-
-
33745614074
-
Position-specific chemical modification of siRNAs reduces 'off-target' transcript silencing
-
Jackson, A. L., Burchard, J., Leake, D., Reynolds, A., Schelter, J., Guo, J., Johnson, J. M., Lim, L., Karpilow, J., Nichols, K. et al. (2006) Position-specific chemical modification of siRNAs reduces 'off-target' transcript silencing. RNA, 12, 1197-1205.
-
(2006)
RNA
, vol.12
, pp. 1197-1205
-
-
Jackson, A.L.1
Burchard, J.2
Leake, D.3
Reynolds, A.4
Schelter, J.5
Guo, J.6
Johnson, J.M.7
Lim, L.8
Karpilow, J.9
Nichols, K.10
-
6
-
-
1642430704
-
Antisense oligonucleotide-based therapeutics for cancer
-
Dean, N. M. and Bennett, C. F. (2003) Antisense oligonucleotide-based therapeutics for cancer. Oncogene, 22, 9087-9096.
-
(2003)
Oncogene
, vol.22
, pp. 9087-9096
-
-
Dean, N.M.1
Bennett, C.F.2
-
7
-
-
75649128759
-
Effects of chemical modification on the potency, serum stability, and immunostimulatory properties of short shRNAs
-
Ge, Q., Dallas, A., Ilves, H. and Shorenstein, J. (2010) Effects of chemical modification on the potency, serum stability, and immunostimulatory properties of short shRNAs. RNA, 16, 118-130.
-
(2010)
RNA
, vol.16
, pp. 118-130
-
-
Ge, Q.1
Dallas, A.2
Ilves, H.3
Shorenstein, J.4
-
8
-
-
17644399512
-
Pharmacokinetics and biodistribution of novel aptamer compositions
-
Healy, J. M., Lewis, S. D., Kurz, M., Boomer, R. M., Thompson, K. M., Wilson, C. and McCauley, T. G. (2004) Pharmacokinetics and biodistribution of novel aptamer compositions. Pharm. Res., 21, 2234-2246.
-
(2004)
Pharm. Res.
, vol.21
, pp. 2234-2246
-
-
Healy, J.M.1
Lewis, S.D.2
Kurz, M.3
Boomer, R.M.4
Thompson, K.M.5
Wilson, C.6
McCauley, T.G.7
-
9
-
-
79956299608
-
Aptamer ARC19499 mediates a procoagulant hemostatic effect by inhibiting tissue factor pathway inhibitor
-
Waters, E. K., Genga, R. M., Schwartz, M. C., Nelson, J. A., Schaub, R. G., Olson, K. A., Kurz, J. C. and McGinness, K. E. (2011) Aptamer ARC19499 mediates a procoagulant hemostatic effect by inhibiting tissue factor pathway inhibitor. Blood, 117, 5514-5522.
-
(2011)
Blood
, vol.117
, pp. 5514-5522
-
-
Waters, E.K.1
Genga, R.M.2
Schwartz, M.C.3
Nelson, J.A.4
Schaub, R.G.5
Olson, K.A.6
Kurz, J.C.7
McGinness, K.E.8
-
10
-
-
0037099536
-
Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen
-
Lupold, S., Hicke, B., Lin, Y. and Coffey, D. (2002) Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen. Cancer Res., 62, 4029-4033.
-
(2002)
Cancer Res
, vol.62
, pp. 4029-4033
-
-
Lupold, S.1
Hicke, B.2
Lin, Y.3
Coffey, D.4
-
12
-
-
19944428130
-
Direct in vitro selection of a 2-O-methyl aptamer to VEGF
-
Burmeister, P. E., Lewis, S. D., Silva, R. F., Preiss, J. R., Horwitz, L. R., Pendergrast, P. S., McCauley, T. G., Kurz, J. C., Epstein, D. M., Wilson, C. et al. (2005) Direct in vitro selection of a 2-O-methyl aptamer to VEGF. Chem. Biol., 12, 25-33.
-
(2005)
Chem. Biol.
, vol.12
, pp. 25-33
-
-
Burmeister, P.E.1
Lewis, S.D.2
Silva, R.F.3
Preiss, J.R.4
Horwitz, L.R.5
Pendergrast, P.S.6
McCauley, T.G.7
Kurz, J.C.8
Epstein, D.M.9
Wilson, C.10
-
13
-
-
0034069921
-
In vitro selection of a novel nuclease-resistant RNA phosphodiesterase
-
Beaudry, A., DeFoe, J., Zinnen, S., Burgin, A. and Beigelman, L. (2000) In vitro selection of a novel nuclease-resistant RNA phosphodiesterase. Chem. Biol., 7, 323-334.
-
(2000)
Chem. Biol.
, vol.7
, pp. 323-334
-
-
Beaudry, A.1
DeFoe, J.2
Zinnen, S.3
Burgin, A.4
Beigelman, L.5
-
14
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington, A. D. and Szostak, J. W. (1990) In vitro selection of RNA molecules that bind specific ligands. Nature, 346, 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
15
-
-
0029146335
-
Mutants of T7 RNA polymerase that are able to synthesize both RNA and DNA
-
Kostyuk, D. A., Dragan, S. M., Lyakhov, D. L., Rechinsky, V. O., Tunitskaya, V. L., Chernov, B. K. and Kochetkov, S. N. (1995) Mutants of T7 RNA polymerase that are able to synthesize both RNA and DNA. FEBS Lett., 369, 165-168.
-
(1995)
FEBS Lett
, vol.369
, pp. 165-168
-
-
Kostyuk, D.A.1
Dragan, S.M.2
Lyakhov, D.L.3
Rechinsky, V.O.4
Tunitskaya, V.L.5
Chernov, B.K.6
Kochetkov, S.N.7
-
16
-
-
0029091457
-
A mutant T7 RNA polymerase as a DNA polymerase
-
Sousa, R. and Padilla, R. (1995) A mutant T7 RNA polymerase as a DNA polymerase. EMBO J., 14, 4609-4621.
-
(1995)
EMBO J.
, vol.14
, pp. 4609-4621
-
-
Sousa, R.1
Padilla, R.2
-
17
-
-
0030854581
-
Mechanism of ribose 2-group discrimination by an RNA polymerase
-
Huang, Y., Eckstein, F., Padilla, R. and Sousa, R. (1997) Mechanism of ribose 2-group discrimination by an RNA polymerase. Biochemistry, 36, 8231-8242.
-
(1997)
Biochemistry
, vol.36
, pp. 8231-8242
-
-
Huang, Y.1
Eckstein, F.2
Padilla, R.3
Sousa, R.4
-
18
-
-
0037114247
-
A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non-canonical NTPs
-
Padilla, R. and Sousa, R. (2002) A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non-canonical NTPs. Nucleic Acids Res., 30, e138.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. e138
-
-
Padilla, R.1
Sousa, R.2
-
19
-
-
0034620583
-
Roles of histidine 784 and tyrosine 639 in ribose discrimination by T7 RNA polymerase
-
Brieba, L. G. and Sousa, R. (2000) Roles of histidine 784 and tyrosine 639 in ribose discrimination by T7 RNA polymerase. Biochemistry, 39, 919-923.
-
(2000)
Biochemistry
, vol.39
, pp. 919-923
-
-
Brieba, L.G.1
Sousa, R.2
-
20
-
-
4444326623
-
Evolution of a T7 RNA polymerase variant that transcribes 2-O-methyl RNA
-
Chelliserrykattil, J. and Ellington, A. D. (2004) Evolution of a T7 RNA polymerase variant that transcribes 2-O-methyl RNA. Nat. Biotechnol., 22, 1155-1160.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1155-1160
-
-
Chelliserrykattil, J.1
Ellington, A.D.2
-
21
-
-
84866249605
-
Screening mutant libraries of T7 RNA polymerase for candidates with increased acceptance of 2-modified nucleotides
-
Siegmund, V., Santner, T., Micura, R. and Marx, A. (2012) Screening mutant libraries of T7 RNA polymerase for candidates with increased acceptance of 2-modified nucleotides. Chem. Commun., 48, 9870-9872.
-
(2012)
Chem. Commun.
, vol.48
, pp. 9870-9872
-
-
Siegmund, V.1
Santner, T.2
Micura, R.3
Marx, A.4
-
22
-
-
84881513084
-
Identification of a T7 RNA polymerase variant that permits the enzymatic synthesis of fully 2-O-methyl-modified RNA
-
Ibach, J., Dietrich, L., Koopmans, K. R. M., N?bel, N., Skoupi, M. and Brakmann, S. (2013) Identification of a T7 RNA polymerase variant that permits the enzymatic synthesis of fully 2-O-methyl-modified RNA. J. Biotechnol., 167, 287-295.
-
(2013)
J. Biotechnol.
, vol.167
, pp. 287-295
-
-
Ibach, J.1
Dietrich, L.2
Koopmans, K.R.M.3
Nbel, N.4
Skoupi, M.5
Brakmann, S.6
-
23
-
-
0036295508
-
Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs
-
Wang, X., Minasov, G. and Shoichet, B. K. (2002) Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs. J. Mol. Biol., 320, 85-95.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 85-95
-
-
Wang, X.1
Minasov, G.2
Shoichet, B.K.3
-
24
-
-
40149099484
-
How protein stability and new functions trade off
-
Tokuriki, N., Stricher, F., Serrano, L. and Tawfik, D. S. (2008) How protein stability and new functions trade off. PLoS Comput. Biol., 4, e1000002.
-
(2008)
PLoS Comput. Biol.
, vol.4
, pp. e1000002
-
-
Tokuriki, N.1
Stricher, F.2
Serrano, L.3
Tawfik, D.S.4
-
25
-
-
70450242805
-
Exploring protein fitness landscapes by directed evolution
-
Romero, P. A. and Arnold, F. H. (2009) Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell Biol., 10, 866-876.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 866-876
-
-
Romero, P.A.1
Arnold, F.H.2
-
26
-
-
70349832423
-
Following evolutionary paths to protein-protein interactions with high affinity and selectivity
-
Levin, K. B., Dym, O., Albeck, S., Magdassi, S., Keeble, A. H., Kleanthous, C. and Tawfik, D. S. (2009) Following evolutionary paths to protein-protein interactions with high affinity and selectivity. Nat. Struct. Mol. Biol., 16, 1049-1055.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1049-1055
-
-
Levin, K.B.1
Dym, O.2
Albeck, S.3
Magdassi, S.4
Keeble, A.H.5
Kleanthous, C.6
Tawfik, D.S.7
-
27
-
-
77954743785
-
Mutational effects and the evolution of new protein functions
-
Soskine, M. and Tawfik, D. S. (2010) Mutational effects and the evolution of new protein functions. Nat. Rev. Genet., 11, 572-582.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 572-582
-
-
Soskine, M.1
Tawfik, D.S.2
-
28
-
-
77954129578
-
Overlap extension PCR cloning: A simple and reliable way to create recombinant plasmids
-
Bryksin, A. V. and Matsumura, I. (2010) Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. Biotechniques, 48, 463-465.
-
(2010)
Biotechniques
, vol.48
, pp. 463-465
-
-
Bryksin, A.V.1
Matsumura, I.2
-
29
-
-
79957471219
-
Enzymatic assembly of overlapping DNA fragments
-
Gibson, D. G. (2011) Enzymatic assembly of overlapping DNA fragments. Methods Enzymol., 498, 349-361.
-
(2011)
Methods Enzymol
, vol.498
, pp. 349-361
-
-
Gibson, D.G.1
-
30
-
-
0033579380
-
Structure of a transcribing T7 RNA polymerase initiation complex
-
Cheetham, G. M. and Steitz, T. A. (1999) Structure of a transcribing T7 RNA polymerase initiation complex. Science, 286, 2305-2309.
-
(1999)
Science
, vol.286
, pp. 2305-2309
-
-
Cheetham, G.M.1
Steitz, T.A.2
-
31
-
-
1642276330
-
Structural basis for substrate selection by T7 RNA polymerase
-
Temiakov, D., Patlan, V., Anikin, M., McAllister, W. T., Yokoyama, S. and Vassylyev, D. G. (2004) Structural basis for substrate selection by T7 RNA polymerase. Cell, 116, 381-391.
-
(2004)
Cell
, vol.116
, pp. 381-391
-
-
Temiakov, D.1
Patlan, V.2
Anikin, M.3
McAllister, W.T.4
Yokoyama, S.5
Vassylyev, D.G.6
-
32
-
-
84892184252
-
Directed evolution of genetic parts and circuits by compartmentalized partnered replication
-
Ellefson, J. W., Meyer, A. J., Hughes, R. A., Cannon, J. R., Brodbelt, J. S. and Ellington, A. D. (2014) Directed evolution of genetic parts and circuits by compartmentalized partnered replication. Nat. Biotechnol., 32, 97-101.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 97-101
-
-
Ellefson, J.W.1
Meyer, A.J.2
Hughes, R.A.3
Cannon, J.R.4
Brodbelt, J.S.5
Ellington, A.D.6
-
33
-
-
84878427504
-
Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution
-
Dickinson, B. C., Leconte, A. M., Allen, B., Esvelt, K. M. and Liu, D. R. (2013) Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution. Proc. Natl. Acad. Sci. U. S. A., 110, 9007-9012.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 9007-9012
-
-
Dickinson, B.C.1
Leconte, A.M.2
Allen, B.3
Esvelt, K.M.4
Liu, D.R.5
-
34
-
-
84885430465
-
Unbiased tracking of the progression of mRNA and protein synthesis in bulk and in liposome-confined reactions
-
Van Nies, P., Nourian, Z., Kok, M., van Wijk, R., Moeskops, J., Westerlaken, I., Poolman, J. M., Eelkema, R., van Esch, J. H., Kuruma, Y. et al. (2013) Unbiased tracking of the progression of mRNA and protein synthesis in bulk and in liposome-confined reactions. Chembiochem, 14, 1963-1966.
-
(2013)
Chembiochem
, vol.14
, pp. 1963-1966
-
-
Van Nies, P.1
Nourian, Z.2
Kok, M.3
Van Wijk, R.4
Moeskops, J.5
Westerlaken, I.6
Poolman, J.M.7
Eelkema, R.8
Van Esch, J.H.9
Kuruma, Y.10
-
35
-
-
84941569866
-
-
U. S. Patent 7 507, 567 B2
-
Sugiyama, A., Nishiya, Y. and Kawakami, B. (2009) RNA Polymerase Mutants with Increased Thermostability. U. S. Patent 7, 507, 567 B2.
-
(2009)
RNA Polymerase Mutants with Increased Thermostability
-
-
Sugiyama, A.1
Nishiya, Y.2
Kawakami, B.3
-
36
-
-
17844402985
-
A mutation in T7 RNA polymerase that facilitates promoter clearance
-
Guillerez, J., Lopez, P. J., Proux, F., Launay, H. and Dreyfus, M. (2005) A mutation in T7 RNA polymerase that facilitates promoter clearance. Proc. Natl. Acad. Sci. U. S. A., 102, 5958-63.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 5958-5963
-
-
Guillerez, J.1
Lopez, P.J.2
Proux, F.3
Launay, H.4
Dreyfus, M.5
-
37
-
-
33845864966
-
Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein
-
Bershtein, S., Segal, M., Bekerman, R., Tokuriki, N. and Tawfik, D. S. (2006) Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein. Nature, 444, 929-32.
-
(2006)
Nature
, vol.444
, pp. 929-932
-
-
Bershtein, S.1
Segal, M.2
Bekerman, R.3
Tokuriki, N.4
Tawfik, D.S.5
-
38
-
-
44349161622
-
Intense neutral drifts yield robust and evolvable consensus proteins
-
Bershtein, S., Goldin, K. and Tawfik, D. S. (2008) Intense neutral drifts yield robust and evolvable consensus proteins. J. Mol. Biol., 379, 1029-1044.
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 1029-1044
-
-
Bershtein, S.1
Goldin, K.2
Tawfik, D.S.3
-
39
-
-
0028106430
-
The studies of cooperative regions in T7 RNA polymerase
-
Protasevich, I. I. (1994) The studies of cooperative regions in T7 RNA polymerase. FEBS Lett., 349, 429-432.
-
(1994)
FEBS Lett.
, vol.349
, pp. 429-432
-
-
Protasevich, I.I.1
-
40
-
-
84921980554
-
-
U. S. Patent 8, 105, 813 B2
-
Diener, J. L., Keefe, A. D., Thompson, K., Wang, C. and Zhu, S. (2012) Materials and methods for the generation of fully 2-modified nucleic acid transcripts. U. S. Patent 8, 105, 813 B2.
-
(2012)
Materials and Methods for the Generation of Fully 2-modified Nucleic Acid Transcripts
-
-
Diener, J.L.1
Keefe, A.D.2
Thompson, K.3
Wang, C.4
Zhu, S.5
-
41
-
-
84901593974
-
In vitro selection using modified or unnatural nucleotides
-
Stovall, G. M., Bedenbaugh, R., Singh, S., Meyer, A. J., Hatala, P. J., Ellington, A. D. and Hall, B. (2014) In Vitro Selection Using Modified or Unnatural Nucleotides. Curr. Protoc. Nucleic Acid Chem., 56, doi:10. 1002/0471142700. nc0906s56.
-
(2014)
Curr. Protoc. Nucleic Acid Chem.
, vol.56
-
-
Stovall, G.M.1
Bedenbaugh, R.2
Singh, S.3
Meyer, A.J.4
Hatala, P.J.5
Ellington, A.D.6
Hall, B.7
-
42
-
-
65549084298
-
Potential role of phenotypic mutations in the evolution of protein expression and stability
-
Goldsmith, M. and Tawfik, D. S. (2009) Potential role of phenotypic mutations in the evolution of protein expression and stability. Proc. Natl. Acad. Sci. U. S. A., 106, 6197-202.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 6197-6202
-
-
Goldsmith, M.1
Tawfik, D.S.2
|