메뉴 건너뛰기




Volumn 22, Issue 9, 2004, Pages 1155-1160

Evolution of a T7 RNA polymerase variant that transcribes 2′-O-methyl RNA

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVITY-BASED METHODS; RNA POLYMERASE; TRANSCRIPTION;

EID: 4444326623     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt1001     Document Type: Article
Times cited : (144)

References (30)
  • 1
    • 0036636074 scopus 로고    scopus 로고
    • Nucleic-acid therapeutics: Basic principles and recent applications
    • Opalinska, J.B. & Gewirtz, A.M. Nucleic-acid therapeutics: basic principles and recent applications. Nat. Rev. Drug Discov. 1, 503-514 (2002).
    • (2002) Nat. Rev. Drug Discov. , vol.1 , pp. 503-514
    • Opalinska, J.B.1    Gewirtz, A.M.2
  • 2
    • 0037062920 scopus 로고    scopus 로고
    • Emerging clinical applications of RNA
    • Sullenger, B.A. & Gilboa, E. Emerging clinical applications of RNA. Nature 418, 252-258 (2002).
    • (2002) Nature , vol.418 , pp. 252-258
    • Sullenger, B.A.1    Gilboa, E.2
  • 3
    • 0026337408 scopus 로고
    • Kinetic characterization of ribonuclease-resistant 2′-modified hammerhead ribozymes
    • Pieken, W.A., Olsen, D.B., Benseler, F., Aurup, H. & Eckstein, F. Kinetic characterization of ribonuclease-resistant 2′-modified hammerhead ribozymes. Science 253, 314-317 (1991).
    • (1991) Science , vol.253 , pp. 314-317
    • Pieken, W.A.1    Olsen, D.B.2    Benseler, F.3    Aurup, H.4    Eckstein, F.5
  • 4
    • 0037733977 scopus 로고    scopus 로고
    • Antisense technologies improvement through novel chemical modifications
    • Kurreck, J. Antisense technologies Improvement through novel chemical modifications. Eur. J. Biochem. 270, 1628-1644 (2003).
    • (2003) Eur. J. Biochem. , vol.270 , pp. 1628-1644
    • Kurreck, J.1
  • 5
    • 3042658255 scopus 로고    scopus 로고
    • A combined in vitrol in vivo selection for polymerases with novel promoter specificities
    • Chelliserrykattil, J., Cai, G. & Ellington, A.D. A combined in vitrol in vivo selection for polymerases with novel promoter specificities. BMC Biotechnol. 1, 13 (2001).
    • (2001) BMC Biotechnol. , vol.1 , pp. 13
    • Chelliserrykattil, J.1    Cai, G.2    Ellington, A.D.3
  • 6
    • 0034625013 scopus 로고    scopus 로고
    • DNA polymerase active site is highly mutable: Evolutionary consequences
    • Patel, P.H. & Loeb, L.A. DNA polymerase active site is highly mutable: evolutionary consequences. Proc. Natl. Acad. Sci. USA 97, 5095-5100 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5095-5100
    • Patel, P.H.1    Loeb, L.A.2
  • 7
    • 0035836707 scopus 로고    scopus 로고
    • Directed evolution of polymerase function by compartmentalized self-replication
    • Ghadessy, F.J., Ong, J.L. & Holliger, P. Directed evolution of polymerase function by compartmentalized self-replication. Proc. Natl. Acad. Sci. USA 98, 4552-4557 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4552-4557
    • Ghadessy, F.J.1    Ong, J.L.2    Holliger, P.3
  • 8
    • 0034704124 scopus 로고    scopus 로고
    • Multiple amino acid substitutions allow DNA polymerases to synthesize RNA
    • Patel, P.H. & Loeb, L.A. Multiple amino acid substitutions allow DNA polymerases to synthesize RNA. J. Biol. Chem. 275, 40266-40272 (2000).
    • (2000) J. Biol. Chem. , vol.275 , pp. 40266-40272
    • Patel, P.H.1    Loeb, L.A.2
  • 9
    • 0037076311 scopus 로고    scopus 로고
    • Directed evolution of novel polymerase activities: Mutation of a DNA polymerase into an efficient RNA polymerase
    • Xia, G. et al. Directed evolution of novel polymerase activities: mutation of a DNA polymerase into an efficient RNA polymerase. Proc. Natl. Acad. Sci. USA 99, 6597-6602 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6597-6602
    • Xia, G.1
  • 10
    • 1242314258 scopus 로고    scopus 로고
    • Expanding the substrate repertoire of a DNA polymerase by directed evolution
    • Fa, M., Radeghieri, A., Henry, A.A. & Romesberg, F.E. Expanding the substrate repertoire of a DNA polymerase by directed evolution. J. Am. Chem. Soc. 126, 1748-1754 (2004).
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 1748-1754
    • Fa, M.1    Radeghieri, A.2    Henry, A.A.3    Romesberg, F.E.4
  • 11
    • 1342332935 scopus 로고    scopus 로고
    • 2′-deoxycytidines carrying amino and thiol functionality: Synthesis and incorporation by vent (exo(-)) polymerase
    • Roychowdhury, A., Illangkoon, H., Hendrickson, C.L. & Benner, S.A. 2′-deoxycytidines carrying amino and thiol functionality: synthesis and incorporation by vent (exo(-)) polymerase. Org. Lett. 6, 489-492 (2004).
    • (2004) Org. Lett. , vol.6 , pp. 489-492
    • Roychowdhury, A.1    Illangkoon, H.2    Hendrickson, C.L.3    Benner, S.A.4
  • 12
    • 0344235337 scopus 로고    scopus 로고
    • Expanding the genetic alphabet: Non-epimerizing nucleoside with the pyDDA hydrogen-bonding pattern
    • Hutter, D. & Benner, S.A. Expanding the genetic alphabet: non-epimerizing nucleoside with the pyDDA hydrogen-bonding pattern. J. Org. Chem. 68, 9839-9842 (2003).
    • (2003) J. Org. Chem. , vol.68 , pp. 9839-9842
    • Hutter, D.1    Benner, S.A.2
  • 13
    • 0344495971 scopus 로고    scopus 로고
    • An unnatural hydrophobic base, 4-propynylpyrrole-2-carbaldehyde, as an efficient pairing partner of 9-methylimidazo[(4,5)-b]pyridine
    • Mitsui, T., Kimoto, M., Sato, A., Yokoyama, S. & Hirao, I. An unnatural hydrophobic base, 4-propynylpyrrole-2-carbaldehyde, as an efficient pairing partner of 9-methylimidazo[(4,5)-b]pyridine. Bioorg. Med. Chem. Lett. 13, 4515-4518 (2003).
    • (2003) Bioorg. Med. Chem. Lett. , vol.13 , pp. 4515-4518
    • Mitsui, T.1    Kimoto, M.2    Sato, A.3    Yokoyama, S.4    Hirao, I.5
  • 14
    • 0027492904 scopus 로고
    • Enzymatic recognition of the base pair between isocytidine and isoguanosine
    • Switzer, C.Y., Moroney, S.E. & Benner, S.A. Enzymatic recognition of the base pair between isocytidine and isoguanosine. Biochemistry 32, 10489-10496 (1993).
    • (1993) Biochemistry , vol.32 , pp. 10489-10496
    • Switzer, C.Y.1    Moroney, S.E.2    Benner, S.A.3
  • 15
    • 0142181145 scopus 로고    scopus 로고
    • An unnatural base pair for efficient incorporation of nucleotide analogs into RNAs
    • Hirao, I., Mitsui, T., Kimoto, M., Harada, Y. & Yokoyama, S. An unnatural base pair for efficient incorporation of nucleotide analogs into RNAs. Nucleic Acids Res. Suppl. 3, 215-216 (2003).
    • (2003) Nucleic Acids Res. Suppl. , vol.3 , pp. 215-216
    • Hirao, I.1    Mitsui, T.2    Kimoto, M.3    Harada, Y.4    Yokoyama, S.5
  • 16
    • 1342327652 scopus 로고    scopus 로고
    • PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1
    • Sismour, A.M. et al. PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1. Nucleic Acids Res. 32, 728-735 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 728-735
    • Sismour, A.M.1
  • 17
    • 0037114247 scopus 로고    scopus 로고
    • A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non-canonical NTPs
    • Padilla, R. & Sousa, R. A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non-canonical NTPs. Nucleic Acids Res. 30, e138 (2002).
    • (2002) Nucleic Acids Res. , vol.30
    • Padilla, R.1    Sousa, R.2
  • 18
    • 0033559119 scopus 로고    scopus 로고
    • Efficient synthesis of nucleic acids heavily modified with noncanonical ribose 2′-groups using a mutant T7 RNA polymerase (RNAP)
    • Padilla, R. & Sousa, R. Efficient synthesis of nucleic acids heavily modified with noncanonical ribose 2′-groups using a mutant T7 RNA polymerase (RNAP). Nucleic Acids Res. 27, 1561-1563 (1999).
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1561-1563
    • Padilla, R.1    Sousa, R.2
  • 19
    • 0030854581 scopus 로고    scopus 로고
    • Mechanism of ribose 2′-group discrimination by an RNA polymerase
    • Huang, Y., Eckstein, F., Padilla, R. & Sousa, R. Mechanism of ribose 2′-group discrimination by an RNA polymerase. Biochemistry 36, 8231-8242 (1997).
    • (1997) Biochemistry , vol.36 , pp. 8231-8242
    • Huang, Y.1    Eckstein, F.2    Padilla, R.3    Sousa, R.4
  • 20
    • 0034620583 scopus 로고    scopus 로고
    • Roles of histidine 784 and tyrosine 639 in ribose discrimination by T7 RNA polymerase
    • Brieba, L.G. & Sousa, R. Roles of histidine 784 and tyrosine 639 in ribose discrimination by T7 RNA polymerase. Biochemistry 39, 919-923 (2000).
    • (2000) Biochemistry , vol.39 , pp. 919-923
    • Brieba, L.G.1    Sousa, R.2
  • 21
    • 0037112082 scopus 로고    scopus 로고
    • Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase
    • Yin, Y.W. & Steitz, T.A. Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase. Science 298, 1387-1395 (2002).
    • (2002) Science , vol.298 , pp. 1387-1395
    • Yin, Y.W.1    Steitz, T.A.2
  • 22
    • 1642276330 scopus 로고    scopus 로고
    • Structural basis for substrate selection by T7 RNA polymerase
    • Temiakov, D. et al. Structural basis for substrate selection by T7 RNA polymerase. Cell 116, 381-391 (2004).
    • (2004) Cell , vol.116 , pp. 381-391
    • Temiakov, D.1
  • 23
    • 0029091457 scopus 로고
    • A mutant T7 RNA polymerase as a DNA polymerase
    • Sousa, R. & Padilla, R. A mutant T7 RNA polymerase as a DNA polymerase. EMBO J. 14, 4609-4621 (1995).
    • (1995) EMBO J. , vol.14 , pp. 4609-4621
    • Sousa, R.1    Padilla, R.2
  • 24
    • 0038385504 scopus 로고    scopus 로고
    • RNA interference in mammalian cells by chemically-modified RNA
    • Braasch, D.A. et al. RNA interference in mammalian cells by chemically-modified RNA. Biochemistry 42, 7967-7975 (2003).
    • (2003) Biochemistry , vol.42 , pp. 7967-7975
    • Braasch, D.A.1
  • 25
    • 0032562751 scopus 로고    scopus 로고
    • Template strand switching by T7 RNA polymerase
    • Rong, M., Durbin, R.K. & McAllister, W.T. Template strand switching by T7 RNA polymerase. J. Biol. Chem. 273, 10253-10260 (1998).
    • (1998) J. Biol. Chem. , vol.273 , pp. 10253-10260
    • Rong, M.1    Durbin, R.K.2    McAllister, W.T.3
  • 26
    • 0028275049 scopus 로고
    • Structural determinants of enzymatic processivity
    • delCardayre, S.B. & Raines, R.T. Structural determinants of enzymatic processivity. Biochemistry 33, 6031-6037 (1994).
    • (1994) Biochemistry , vol.33 , pp. 6031-6037
    • DelCardayre, S.B.1    Raines, R.T.2
  • 27
    • 0036846993 scopus 로고    scopus 로고
    • Antisense therapy for cancer-the time of truth
    • Jansen, B. & Zangemeister-Wittke, U. Antisense therapy for cancer-the time of truth. Lancet Oncol. 3, 672-683 (2002).
    • (2002) Lancet Oncol. , vol.3 , pp. 672-683
    • Jansen, B.1    Zangemeister-Wittke, U.2
  • 28
    • 0032077477 scopus 로고    scopus 로고
    • Advantages of 2′-O-methyl oligoribonucleotide probes for detecting RNA targets
    • Majlessi, M., Nelson, N.C. & Becker, M.M. Advantages of 2′-O-methyl oligoribonucleotide probes for detecting RNA targets. Nucleic Acids Res. 26, 2224-2229 (1998).
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2224-2229
    • Majlessi, M.1    Nelson, N.C.2    Becker, M.M.3
  • 29
    • 0032510712 scopus 로고    scopus 로고
    • What affects the effect of 2′-alkoxy modifications? 1. Stabilization effect of 2′-methoxy substitutions in uniformly modified DNA oligonucleotides
    • Lesnik, E.A. & Freier, S.M. What affects the effect of 2′-alkoxy modifications? 1. Stabilization effect of 2′-methoxy substitutions in uniformly modified DNA oligonucleotides. Biochemistry 37, 6991-6997 (1998).
    • (1998) Biochemistry , vol.37 , pp. 6991-6997
    • Lesnik, E.A.1    Freier, S.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.