-
1
-
-
20444376940
-
Protein-Protein Interactions and Cancer: Small Molecules Going in for the Kill
-
Arkin, M. Protein-Protein Interactions and Cancer: Small Molecules Going in for the Kill Curr. Opin. Chem. Biol. 2005, 9, 317-324 10.1016/j.cbpa.2005.03.001
-
(2005)
Curr. Opin. Chem. Biol.
, vol.9
, pp. 317-324
-
-
Arkin, M.1
-
2
-
-
84897443073
-
Oncogenic Protein Interfaces: Small Molecules, Big Challenges
-
Nero, T. L.; Morton, C. J.; Holien, J. K.; Wielens, J.; Parker, M. W. Oncogenic Protein Interfaces: Small Molecules, Big Challenges Nat. Rev. Cancer 2014, 14, 248-262 10.1038/nrc3690
-
(2014)
Nat. Rev. Cancer
, vol.14
, pp. 248-262
-
-
Nero, T.L.1
Morton, C.J.2
Holien, J.K.3
Wielens, J.4
Parker, M.W.5
-
3
-
-
84901649551
-
In Vivo Modulation of Hypoxia-Inducible Signaling by Topographical Helix Mimetics
-
Lao, B. B.; Grishagin, I.; Mesallati, H.; Brewer, T. F.; Olenyuk, B. Z.; Arora, P. S. In Vivo Modulation of Hypoxia-Inducible Signaling by Topographical Helix Mimetics Proc. Natl. Acad. Sci. U. S. A. 2014, 111, 7531-7536 10.1073/pnas.1402393111
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 7531-7536
-
-
Lao, B.B.1
Grishagin, I.2
Mesallati, H.3
Brewer, T.F.4
Olenyuk, B.Z.5
Arora, P.S.6
-
4
-
-
84871744906
-
Specific Inhibition of p25/Cdk5 Activity by the Cdk5 Inhibitory Peptide Reduces Neurodegeneration in Vivo
-
Sundaram, J. R.; Poore, C. P.; Sulaimee, N. H. B.; Pareek, T.; Asad, A. B. M. A.; Rajkumar, R.; Cheong, W. F.; Wenk, M. R.; Dawe, G. S.; Chuang, K.-H.; Pant, H. C.; Kesavapany, S. Specific Inhibition of p25/Cdk5 Activity by the Cdk5 Inhibitory Peptide Reduces Neurodegeneration in Vivo J. Neurosci. 2013, 33, 334-343 10.1523/JNEUROSCI.3593-12.2013
-
(2013)
J. Neurosci.
, vol.33
, pp. 334-343
-
-
Sundaram, J.R.1
Poore, C.P.2
Sulaimee, N.H.B.3
Pareek, T.4
Asad, A.B.M.A.5
Rajkumar, R.6
Cheong, W.F.7
Wenk, M.R.8
Dawe, G.S.9
Chuang, K.-H.10
Pant, H.C.11
Kesavapany, S.12
-
5
-
-
57649138736
-
Small Molecule Protein-Protein Interaction Inhibitors as CNS Therapeutic Agents: Current Progress and Future Hurdles
-
Blazer, L. L.; Neubig, R. R. Small Molecule Protein-Protein Interaction Inhibitors as CNS Therapeutic Agents: Current Progress and Future Hurdles Neuropsychopharmacology 2009, 34, 126-141 10.1038/npp.2008.151
-
(2009)
Neuropsychopharmacology
, vol.34
, pp. 126-141
-
-
Blazer, L.L.1
Neubig, R.R.2
-
6
-
-
80052168618
-
Dimeric MHC-Peptides Inserted into an Immunoglobulin Scaffold as New Immunotherapeutic Agents
-
Goldberg, B.; Bona, C. Dimeric MHC-Peptides Inserted into an Immunoglobulin Scaffold as New Immunotherapeutic Agents J. Cell. Mol. Med. 2011, 15, 1822-1832 10.1111/j.1582-4934.2011.01319.x
-
(2011)
J. Cell. Mol. Med.
, vol.15
, pp. 1822-1832
-
-
Goldberg, B.1
Bona, C.2
-
7
-
-
0037414274
-
Discovery of a Potent Small Molecule IL-2 Inhibitor through Fragment Assembly
-
Braisted, A. C.; Oslob, J. D.; Delano, W. L.; Hyde, J.; McDowell, R. S.; Waal, N.; Yu, C.; Arkin, M. R.; Raimundo, B. C. Discovery of a Potent Small Molecule IL-2 Inhibitor through Fragment Assembly J. Am. Chem. Soc. 2003, 125, 3714-3715 10.1021/ja034247i
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 3714-3715
-
-
Braisted, A.C.1
Oslob, J.D.2
Delano, W.L.3
Hyde, J.4
McDowell, R.S.5
Waal, N.6
Yu, C.7
Arkin, M.R.8
Raimundo, B.C.9
-
8
-
-
27744586067
-
Small-Molecule Inhibition of TNF-Alpha
-
He, M. M.; Smith, A. S.; Oslob, J. D.; Flanagan, W. M.; Braisted, A. C.; Whitty, A.; Cancilla, M. T.; Wang, J.; Lugovskoy, A. A.; Yoburn, J. C.; Fung, A. D.; Farrington, G.; Eldredge, J. K.; Day, E. S.; Cruz, L. A.; Cachero, T. G.; Miller, S. K.; Friedman, J. E.; Choong, I. C.; Cunningham, B. C. Small-Molecule Inhibition of TNF-Alpha Science 2005, 310, 1022-1025
-
(2005)
Science
, vol.310
, pp. 1022-1025
-
-
He, M.M.1
Smith, A.S.2
Oslob, J.D.3
Flanagan, W.M.4
Braisted, A.C.5
Whitty, A.6
Cancilla, M.T.7
Wang, J.8
Lugovskoy, A.A.9
Yoburn, J.C.10
Fung, A.D.11
Farrington, G.12
Eldredge, J.K.13
Day, E.S.14
Cruz, L.A.15
Cachero, T.G.16
Miller, S.K.17
Friedman, J.E.18
Choong, I.C.19
Cunningham, B.C.20
more..
-
9
-
-
34347226332
-
Inhibiting HIV-1 Integrase by Shifting Its Oligomerization Equilibrium
-
Hayouka, Z.; Rosenbluh, J.; Levin, A.; Loya, S.; Lebendiker, M.; Veprintsev, D.; Kotler, M.; Hizi, A.; Loyter, A.; Friedler, A. Inhibiting HIV-1 Integrase by Shifting Its Oligomerization Equilibrium Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 8316-8321 10.1073/pnas.0700781104
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 8316-8321
-
-
Hayouka, Z.1
Rosenbluh, J.2
Levin, A.3
Loya, S.4
Lebendiker, M.5
Veprintsev, D.6
Kotler, M.7
Hizi, A.8
Loyter, A.9
Friedler, A.10
-
10
-
-
33847619355
-
Optimization and Determination of the Absolute Configuration of a Series of Potent Inhibitors of Human Papillomavirus Type-11 E1-E2 Protein-Protein Interaction: A Combined Medicinal Chemistry, NMR and Computational Chemistry Approach
-
Goudreau, N.; Cameron, D. R.; Déziel, R.; Haché, B.; Jakalian, A.; Malenfant, E.; Naud, J.; Ogilvie, W. W.; O'meara, J.; White, P. W.; Yoakim, C. Optimization and Determination of the Absolute Configuration of a Series of Potent Inhibitors of Human Papillomavirus Type-11 E1-E2 Protein-Protein Interaction: A Combined Medicinal Chemistry, NMR and Computational Chemistry Approach Bioorg. Med. Chem. 2007, 15, 2690-2700 10.1016/j.bmc.2007.01.036
-
(2007)
Bioorg. Med. Chem.
, vol.15
, pp. 2690-2700
-
-
Goudreau, N.1
Cameron, D.R.2
Déziel, R.3
Haché, B.4
Jakalian, A.5
Malenfant, E.6
Naud, J.7
Ogilvie, W.W.8
O'Meara, J.9
White, P.W.10
Yoakim, C.11
-
11
-
-
33750067690
-
Discovery of Novel Inhibitors of the ZipA/FtsZ Complex by NMR Fragment Screening Coupled with Structure-Based Design
-
Tsao, D. H. H.; Sutherland, A. G.; Jennings, L. D.; Li, Y.; Rush, T. S.; Alvarez, J. C.; Ding, W.; Dushin, E. G.; Dushin, R. G.; Haney, S. A.; Kenny, C. H.; Malakian, A. K.; Nilakantan, R.; Mosyak, L. Discovery of Novel Inhibitors of the ZipA/FtsZ Complex by NMR Fragment Screening Coupled with Structure-Based Design Bioorg. Med. Chem. 2006, 14, 7953-7961 10.1016/j.bmc.2006.07.050
-
(2006)
Bioorg. Med. Chem.
, vol.14
, pp. 7953-7961
-
-
Tsao, D.H.H.1
Sutherland, A.G.2
Jennings, L.D.3
Li, Y.4
Rush, T.S.5
Alvarez, J.C.6
Ding, W.7
Dushin, E.G.8
Dushin, R.G.9
Haney, S.A.10
Kenny, C.H.11
Malakian, A.K.12
Nilakantan, R.13
Mosyak, L.14
-
12
-
-
0034177264
-
Antagonists of Protein-Protein Interactions
-
Cochran, A. Antagonists of Protein-Protein Interactions Chem. Biol. 2000, 7, R85-R94 10.1016/S1074-5521(00)00106-X
-
(2000)
Chem. Biol.
, vol.7
, pp. 85-R94
-
-
Cochran, A.1
-
13
-
-
0032401982
-
High-Throughput Screening of Historic Collections: Observations on File Size, Biological Targets, and File Diversity
-
Spencer, R. W. High-Throughput Screening of Historic Collections: Observations on File Size, Biological Targets, and File Diversity Biotechnol. Bioeng. 1998, 61, 61-67 10.1002/(SICI)1097-0290(199824)61:1<61::AID-BIT11>3.0.CO;2-C
-
(1998)
Biotechnol. Bioeng.
, vol.61
, pp. 61-67
-
-
Spencer, R.W.1
-
14
-
-
33646567148
-
Between a Rock and a Hard Place?
-
Whitty, A.; Kumaravel, G. Between a Rock and a Hard Place? Nat. Chem. Biol. 2006, 2, 112-118 10.1038/nchembio0306-112
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 112-118
-
-
Whitty, A.1
Kumaravel, G.2
-
15
-
-
33644839988
-
Diversity-Oriented Synthesis: Exploring the Intersections between Chemistry and Biology
-
Tan, D. S. Diversity-Oriented Synthesis: Exploring the Intersections between Chemistry and Biology Nat. Chem. Biol. 2005, 1, 74-84 10.1038/nchembio0705-74
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 74-84
-
-
Tan, D.S.1
-
16
-
-
84909587217
-
Small-Molecule Inhibitors of Protein-Protein Interactions: Progressing toward the Reality
-
Arkin, M. R.; Tang, Y.; Wells, J. A. Small-Molecule Inhibitors of Protein-Protein Interactions: Progressing toward the Reality Chem. Biol. 2014, 21, 1102-1114 10.1016/j.chembiol.2014.09.001
-
(2014)
Chem. Biol.
, vol.21
, pp. 1102-1114
-
-
Arkin, M.R.1
Tang, Y.2
Wells, J.A.3
-
17
-
-
84875436143
-
Inhibition of A-Helix-Mediated Protein-Protein Interactions Using Designed Molecules
-
Azzarito, V.; Long, K.; Murphy, N. S.; Wilson, A. J. Inhibition of A-Helix-Mediated Protein-Protein Interactions Using Designed Molecules Nat. Chem. 2013, 5, 161-173 10.1038/nchem.1568
-
(2013)
Nat. Chem.
, vol.5
, pp. 161-173
-
-
Azzarito, V.1
Long, K.2
Murphy, N.S.3
Wilson, A.J.4
-
18
-
-
84900433934
-
Modulators of Protein-Protein Interactions
-
Milroy, L.-G.; Grossmann, T. N.; Hennig, S.; Brunsveld, L.; Ottmann, C. Modulators of Protein-Protein Interactions Chem. Rev. 2014, 114, 4695-4748 10.1021/cr400698c
-
(2014)
Chem. Rev.
, vol.114
, pp. 4695-4748
-
-
Milroy, L.-G.1
Grossmann, T.N.2
Hennig, S.3
Brunsveld, L.4
Ottmann, C.5
-
19
-
-
67849113794
-
The Rise of Fragment-Based Drug Discovery
-
Murray, C. W.; Rees, D. C. The Rise of Fragment-Based Drug Discovery Nat. Chem. 2009, 1, 187-192 10.1038/nchem.217
-
(2009)
Nat. Chem.
, vol.1
, pp. 187-192
-
-
Murray, C.W.1
Rees, D.C.2
-
20
-
-
46849089254
-
Recent Developments in Fragment-Based Drug Discovery
-
Congreve, M.; Chessari, G.; Tisi, D.; Woodhead, A. J. Recent Developments in Fragment-Based Drug Discovery J. Med. Chem. 2008, 51, 3661-3680 10.1021/jm8000373
-
(2008)
J. Med. Chem.
, vol.51
, pp. 3661-3680
-
-
Congreve, M.1
Chessari, G.2
Tisi, D.3
Woodhead, A.J.4
-
21
-
-
0029836953
-
Discovering High-Affinity Ligands for Proteins: SAR by NMR
-
Shuker, S. B.; Hajduk, P. J.; Meadows, R. P.; Fesik, S. W. Discovering High-Affinity Ligands for Proteins: SAR by NMR Science 1996, 274, 1531-1534 10.1126/science.274.5292.1531
-
(1996)
Science
, vol.274
, pp. 1531-1534
-
-
Shuker, S.B.1
Hajduk, P.J.2
Meadows, R.P.3
Fesik, S.W.4
-
22
-
-
2542643984
-
Integrating Fragment Assembly and Biophysical Methods in the Chemical Advancement of Small-Molecule Antagonists of IL-2: An Approach for Inhibiting Protein-Protein Interactions
-
Raimundo, B. C.; Oslob, J. D.; Braisted, A. C.; Hyde, J.; McDowell, R. S.; Randal, M.; Waal, N. D.; Wilkinson, J.; Yu, C. H.; Arkin, M. R. Integrating Fragment Assembly and Biophysical Methods in the Chemical Advancement of Small-Molecule Antagonists of IL-2: An Approach for Inhibiting Protein-Protein Interactions J. Med. Chem. 2004, 47, 3111-3130 10.1021/jm049967u
-
(2004)
J. Med. Chem.
, vol.47
, pp. 3111-3130
-
-
Raimundo, B.C.1
Oslob, J.D.2
Braisted, A.C.3
Hyde, J.4
McDowell, R.S.5
Randal, M.6
Waal, N.D.7
Wilkinson, J.8
Yu, C.H.9
Arkin, M.R.10
-
23
-
-
37249004920
-
Reaching for High-Hanging Fruit in Drug Discovery at Protein-Protein Interfaces
-
Wells, J. A.; McClendon, C. L. Reaching for High-Hanging Fruit in Drug Discovery at Protein-Protein Interfaces Nature 2007, 450, 1001-1009 10.1038/nature06526
-
(2007)
Nature
, vol.450
, pp. 1001-1009
-
-
Wells, J.A.1
McClendon, C.L.2
-
24
-
-
84857712365
-
Protein-protein Interaction Inhibitors Get into the Groove
-
Mullard, A. Protein-protein Interaction Inhibitors Get into the Groove Nat. Rev. Drug Discovery 2012, 11, 173-175 10.1038/nrd3680
-
(2012)
Nat. Rev. Drug Discovery
, vol.11
, pp. 173-175
-
-
Mullard, A.1
-
25
-
-
58849145512
-
Predicting Druggable Binding Sites at the Protein-Protein Interface
-
Fuller, J. C.; Burgoyne, N. J.; Jackson, R. M. Predicting Druggable Binding Sites at the Protein-Protein Interface Drug Discovery Today 2009, 14, 155-161 10.1016/j.drudis.2008.10.009
-
(2009)
Drug Discovery Today
, vol.14
, pp. 155-161
-
-
Fuller, J.C.1
Burgoyne, N.J.2
Jackson, R.M.3
-
26
-
-
84876231548
-
A Potent and Highly Efficacious Bcl-2/Bcl-xL Inhibitor
-
Aguilar, A.; Zhou, H.; Chen, J.; Liu, L.; Bai, L.; McEachern, D.; Yang, C.-Y.; Meagher, J.; Stuckey, J.; Wang, S. A Potent and Highly Efficacious Bcl-2/Bcl-xL Inhibitor J. Med. Chem. 2013, 56, 3048-3067 10.1021/jm4001105
-
(2013)
J. Med. Chem.
, vol.56
, pp. 3048-3067
-
-
Aguilar, A.1
Zhou, H.2
Chen, J.3
Liu, L.4
Bai, L.5
McEachern, D.6
Yang, C.-Y.7
Meagher, J.8
Stuckey, J.9
Wang, S.10
-
27
-
-
84896837973
-
Discovery of AMG 232, a Potent, Selective, and Orally Bioavailable MDM2-p53 Inhibitor in Clinical Development
-
Sun, D.; Li, Z.; Rew, Y.; Gribble, M.; Bartberger, M. D.; Beck, H. P.; Canon, J.; Chen, A.; Chen, X.; Chow, D.; Deignan, J.; Duquette, J.; Eksterowicz, J.; Fisher, B.; Fox, B. M.; Fu, J.; Gonzalez, A. Z.; Gonzalez-Lopez De Turiso, F.; Houze, J. B.; Huang, X.; Jiang, M.; Jin, L.; Kayser, F.; Liu, J. J.; Lo, M.-C.; Long, A. M.; Lucas, B.; McGee, L. R.; McIntosh, J.; Mihalic, J.; Oliner, J. D.; Osgood, T.; Peterson, M. L.; Roveto, P.; Saiki, A. Y.; Shaffer, P.; Toteva, M.; Wang, Y.; Wang, Y. C.; Wortman, S.; Yakowec, P.; Yan, X.; Ye, Q.; Yu, D.; Yu, M.; Zhao, X.; Zhou, J.; Zhu, J.; Olson, S. H.; Medina, J. C. Discovery of AMG 232, a Potent, Selective, and Orally Bioavailable MDM2-p53 Inhibitor in Clinical Development J. Med. Chem. 2014, 57, 1454-1472 10.1021/jm401753e
-
(2014)
J. Med. Chem.
, vol.57
, pp. 1454-1472
-
-
Sun, D.1
Li, Z.2
Rew, Y.3
Gribble, M.4
Bartberger, M.D.5
Beck, H.P.6
Canon, J.7
Chen, A.8
Chen, X.9
Chow, D.10
Deignan, J.11
Duquette, J.12
Eksterowicz, J.13
Fisher, B.14
Fox, B.M.15
Fu, J.16
Gonzalez, A.Z.17
Gonzalez-Lopez De Turiso, F.18
Houze, J.B.19
Huang, X.20
Jiang, M.21
Jin, L.22
Kayser, F.23
Liu, J.J.24
Lo, M.-C.25
Long, A.M.26
Lucas, B.27
McGee, L.R.28
McIntosh, J.29
Mihalic, J.30
Oliner, J.D.31
Osgood, T.32
Peterson, M.L.33
Roveto, P.34
Saiki, A.Y.35
Shaffer, P.36
Toteva, M.37
Wang, Y.38
Wang, Y.C.39
Wortman, S.40
Yakowec, P.41
Yan, X.42
Ye, Q.43
Yu, D.44
Yu, M.45
Zhao, X.46
Zhou, J.47
Zhu, J.48
Olson, S.H.49
Medina, J.C.50
more..
-
28
-
-
0032479179
-
Anatomy of Hot Spots in Protein Interfaces
-
Bogan, A. A.; Thorn, K. S. Anatomy of Hot Spots in Protein Interfaces J. Mol. Biol. 1998, 280, 1-9 10.1006/jmbi.1998.1843
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
29
-
-
3242879771
-
Computational Alanine Scanning of Protein-Protein Interfaces
-
Kortemme, T.; Kim, D. E.; Baker, D. Computational Alanine Scanning of Protein-Protein Interfaces Sci. Signaling 2004, 2004, pl2 10.1126/stke.2192004pl2
-
(2004)
Sci. Signaling
, vol.2004
, pp. 2
-
-
Kortemme, T.1
Kim, D.E.2
Baker, D.3
-
30
-
-
84864451527
-
PocketQuery: Protein-Protein Interaction Inhibitor Starting Points from Protein-Protein Interaction Structure
-
Koes, D. R.; Camacho, C. J. PocketQuery: Protein-Protein Interaction Inhibitor Starting Points from Protein-Protein Interaction Structure Nucleic Acids Res. 2012, 40, W387-W392 10.1093/nar/gks336
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 387-W392
-
-
Koes, D.R.1
Camacho, C.J.2
-
31
-
-
34548779127
-
Hot Spots - A Review of the Protein-Protein Interface Determinant Amino-Acid Residues
-
Moreira, I. S.; Fernandes, P. A.; Ramos, M. J. Hot Spots - a Review of the Protein-Protein Interface Determinant Amino-Acid Residues Proteins: Struct., Funct., Genet. 2007, 68, 803-812 10.1002/prot.21396
-
(2007)
Proteins: Struct., Funct., Genet.
, vol.68
, pp. 803-812
-
-
Moreira, I.S.1
Fernandes, P.A.2
Ramos, M.J.3
-
32
-
-
84879020527
-
Plucking the High Hanging Fruit: A Systematic Approach for Targeting Protein-Protein Interactions
-
Raj, M.; Bullock, B. N.; Arora, P. S. Plucking the High Hanging Fruit: A Systematic Approach for Targeting Protein-Protein Interactions Bioorg. Med. Chem. 2013, 21, 4051-4057 10.1016/j.bmc.2012.11.023
-
(2013)
Bioorg. Med. Chem.
, vol.21
, pp. 4051-4057
-
-
Raj, M.1
Bullock, B.N.2
Arora, P.S.3
-
33
-
-
84939970800
-
Structure-Based Inhibition of Protein-Protein Interactions
-
Watkins, A. M.; Arora, P. S. Structure-Based Inhibition of Protein-Protein Interactions Eur. J. Med. Chem. 2015, 94, 480-488 10.1016/j.ejmech.2014.09.047
-
(2015)
Eur. J. Med. Chem.
, vol.94
, pp. 480-488
-
-
Watkins, A.M.1
Arora, P.S.2
-
34
-
-
0041989751
-
CASTp: Computed Atlas of Surface Topography of Proteins
-
Binkowski, T. A.; Naghibzadeh, S.; Liang, J. CASTp: Computed Atlas of Surface Topography of Proteins Nucleic Acids Res. 2003, 31, 3352-3355 10.1093/nar/gkg512
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3352-3355
-
-
Binkowski, T.A.1
Naghibzadeh, S.2
Liang, J.3
-
35
-
-
0029935202
-
The Automatic Search for Ligand Binding Sites in Proteins of Known Three-Dimensional Structure Using only Geometric Criteria
-
Peters, K. P.; Fauck, J.; Frömmel, C. The Automatic Search for Ligand Binding Sites in Proteins of Known Three-Dimensional Structure Using Only Geometric Criteria J. Mol. Biol. 1996, 256, 201-213 10.1006/jmbi.1996.0077
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 201-213
-
-
Peters, K.P.1
Fauck, J.2
Frömmel, C.3
-
36
-
-
67649422714
-
Fpocket: An Open Source Platform for Ligand Pocket Detection
-
Le Guilloux, V.; Schmidtke, P.; Tuffery, P. Fpocket: An Open Source Platform for Ligand Pocket Detection BMC Bioinf. 2009, 10, 168 10.1186/1471-2105-10-168
-
(2009)
BMC Bioinf.
, vol.10
, pp. 168
-
-
Le Guilloux, V.1
Schmidtke, P.2
Tuffery, P.3
-
37
-
-
0028881975
-
SURFNET: A Program for Visualizing Molecular Surfaces, Cavities, and Intermolecular Interactions
-
Laskowski, R. A. SURFNET: A Program for Visualizing Molecular Surfaces, Cavities, and Intermolecular Interactions J. Mol. Graphics 1995, 13, 323-330 10.1016/0263-7855(95)00073-9
-
(1995)
J. Mol. Graphics
, vol.13
, pp. 323-330
-
-
Laskowski, R.A.1
-
38
-
-
0342424187
-
Fast Prediction and Visualization of Protein Binding Pockets with PASS
-
Brady, G. P., Jr. ; Stouten, P. F. Fast Prediction and Visualization of Protein Binding Pockets with PASS J. Comput.-Aided Mol. Des. 2000, 14, 383-401 10.1023/A:1008124202956
-
(2000)
J. Comput.-Aided Mol. Des.
, vol.14
, pp. 383-401
-
-
Brady, G.P.1
Stouten, P.F.2
-
39
-
-
75249088440
-
Roll: A New Algorithm for the Detection of Protein Pockets and Cavities with a Rolling Probe Sphere
-
Yu, J.; Zhou, Y.; Tanaka, I.; Yao, M. Roll: A New Algorithm for the Detection of Protein Pockets and Cavities with a Rolling Probe Sphere Bioinformatics 2010, 26, 46-52 10.1093/bioinformatics/btp599
-
(2010)
Bioinformatics
, vol.26
, pp. 46-52
-
-
Yu, J.1
Zhou, Y.2
Tanaka, I.3
Yao, M.4
-
40
-
-
67849097355
-
SITEHOUND-Web: A Server for Ligand Binding Site Identification in Protein Structures
-
Hernandez, M.; Ghersi, D.; Sanchez, R. SITEHOUND-Web: A Server for Ligand Binding Site Identification in Protein Structures Nucleic Acids Res. 2009, 37, W413-W416 10.1093/nar/gkp281
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 413-W416
-
-
Hernandez, M.1
Ghersi, D.2
Sanchez, R.3
-
41
-
-
18744394070
-
Q-SiteFinder: An Energy-Based Method for the Prediction of Protein-Ligand Binding Sites
-
Laurie, A. T. R.; Jackson, R. M. Q-SiteFinder: An Energy-Based Method for the Prediction of Protein-Ligand Binding Sites Bioinformatics 2005, 21, 1908-1916 10.1093/bioinformatics/bti315
-
(2005)
Bioinformatics
, vol.21
, pp. 1908-1916
-
-
Laurie, A.T.R.1
Jackson, R.M.2
-
42
-
-
65249117514
-
Identifying and Characterizing Binding Sites and Assessing Druggability
-
Halgren, T. A. Identifying and Characterizing Binding Sites and Assessing Druggability J. Chem. Inf. Model. 2009, 49, 377-389 10.1021/ci800324m
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 377-389
-
-
Halgren, T.A.1
-
43
-
-
21044444449
-
Pocketome via Comprehensive Identification and Classification of Ligand Binding Envelopes
-
An, J.; Totrov, M.; Abagyan, R. Pocketome via Comprehensive Identification and Classification of Ligand Binding Envelopes Mol. Cell. Proteomics 2005, 4, 752-761 10.1074/mcp.M400159-MCP200
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 752-761
-
-
An, J.1
Totrov, M.2
Abagyan, R.3
-
44
-
-
0027053611
-
POCKET: A Computer Graphics Method for Identifying and Displaying Protein Cavities and Their Surrounding Amino Acids
-
Levitt, D. G.; Banaszak, L. J. POCKET: A Computer Graphics Method for Identifying and Displaying Protein Cavities and Their Surrounding Amino Acids J. Mol. Graphics 1992, 10, 229-234 10.1016/0263-7855(92)80074-N
-
(1992)
J. Mol. Graphics
, vol.10
, pp. 229-234
-
-
Levitt, D.G.1
Banaszak, L.J.2
-
45
-
-
0031370977
-
LIGSITE: Automatic and Efficient Detection of Potential Small Molecule-Binding Sites in Proteins
-
Hendlich, M.; Rippmann, F.; Barnickel, G. LIGSITE: Automatic and Efficient Detection of Potential Small Molecule-Binding Sites in Proteins J. Mol. Graphics Modell. 1997, 15, 359-363 10.1016/S1093-3263(98)00002-3
-
(1997)
J. Mol. Graphics Modell.
, vol.15
, pp. 359-363
-
-
Hendlich, M.1
Rippmann, F.2
Barnickel, G.3
-
46
-
-
33750029942
-
LIGSITEcsc: Predicting Ligand Binding Sites Using the Connolly Surface and Degree of Conservation
-
Huang, B.; Schroeder, M. LIGSITEcsc: Predicting Ligand Binding Sites Using the Connolly Surface and Degree of Conservation BMC Struct. Biol. 2006, 6, 19 10.1186/1472-6807-6-19
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 19
-
-
Huang, B.1
Schroeder, M.2
-
47
-
-
34547341277
-
PocketPicker: Analysis of Ligand Binding-Sites with Shape Descriptors
-
Weisel, M.; Proschak, E.; Schneider, G. PocketPicker: Analysis of Ligand Binding-Sites with Shape Descriptors Chem. Cent. J. 2007, 1, 7 10.1186/1752-153X-1-7
-
(2007)
Chem. Cent. J.
, vol.1
, pp. 7
-
-
Weisel, M.1
Proschak, E.2
Schneider, G.3
-
48
-
-
82855163967
-
Protein 3D Structure Computed from Evolutionary Sequence Variation
-
Marks, D. S.; Colwell, L. J.; Sheridan, R.; Hopf, T. A.; Pagnani, A.; Zecchina, R.; Sander, C. Protein 3D Structure Computed from Evolutionary Sequence Variation PLoS One 2011, 6, e28766 10.1371/journal.pone.0028766
-
(2011)
PLoS One
, vol.6
, pp. 28766
-
-
Marks, D.S.1
Colwell, L.J.2
Sheridan, R.3
Hopf, T.A.4
Pagnani, A.5
Zecchina, R.6
Sander, C.7
-
49
-
-
79751535059
-
POVME: An Algorithm for Measuring Binding-Pocket Volumes
-
Durrant, J. D.; De Oliveira, C. A. F.; McCammon, J. A. POVME: An Algorithm for Measuring Binding-Pocket Volumes J. Mol. Graphics Modell. 2011, 29, 773-776 10.1016/j.jmgm.2010.10.007
-
(2011)
J. Mol. Graphics Modell.
, vol.29
, pp. 773-776
-
-
Durrant, J.D.1
De Oliveira, C.A.F.2
McCammon, J.A.3
-
50
-
-
84856084072
-
FTSite: High Accuracy Detection of Ligand Binding Sites on Unbound Protein Structures
-
Ngan, C.-H.; Hall, D. R.; Zerbe, B.; Grove, L. E.; Kozakov, D.; Vajda, S. FTSite: High Accuracy Detection of Ligand Binding Sites on Unbound Protein Structures Bioinformatics 2012, 28, 286-287 10.1093/bioinformatics/btr651
-
(2012)
Bioinformatics
, vol.28
, pp. 286-287
-
-
Ngan, C.-H.1
Hall, D.R.2
Zerbe, B.3
Grove, L.E.4
Kozakov, D.5
Vajda, S.6
-
51
-
-
84901596602
-
Computational Method to Identify Druggable Binding Sites That Target Protein-Protein Interactions
-
Li, H.; Kasam, V.; Tautermann, C. S.; Seeliger, D.; Vaidehi, N. Computational Method to Identify Druggable Binding Sites That Target Protein-Protein Interactions J. Chem. Inf. Model. 2014, 54, 1391-1400 10.1021/ci400750x
-
(2014)
J. Chem. Inf. Model.
, vol.54
, pp. 1391-1400
-
-
Li, H.1
Kasam, V.2
Tautermann, C.S.3
Seeliger, D.4
Vaidehi, N.5
-
52
-
-
23144462493
-
MEDock: A Web Server for Efficient Prediction of Ligand Binding Sites Based on a Novel Optimization Algorithm
-
Chang, D. T.-H.; Oyang, Y.-J.; Lin, J.-H. MEDock: A Web Server for Efficient Prediction of Ligand Binding Sites Based on a Novel Optimization Algorithm Nucleic Acids Res. 2005, 33, W233-W238 10.1093/nar/gki586
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 233-W238
-
-
Chang, D.T.-H.1
Oyang, Y.-J.2
Lin, J.-H.3
-
53
-
-
77956308900
-
Binding-Site Assessment by Virtual Fragment Screening
-
Huang, N.; Jacobson, M. P. Binding-Site Assessment by Virtual Fragment Screening PLoS One 2010, 5, e10109 10.1371/journal.pone.0010109
-
(2010)
PLoS One
, vol.5
, pp. 10109
-
-
Huang, N.1
Jacobson, M.P.2
-
54
-
-
78650714726
-
Large-Scale Comparison of Four Binding Site Detection Algorithms
-
Schmidtke, P.; Souaille, C.; Estienne, F.; Baurin, N.; Kroemer, R. T. Large-Scale Comparison of Four Binding Site Detection Algorithms J. Chem. Inf. Model. 2010, 50, 2191-2200 10.1021/ci1000289
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 2191-2200
-
-
Schmidtke, P.1
Souaille, C.2
Estienne, F.3
Baurin, N.4
Kroemer, R.T.5
-
55
-
-
33749506205
-
Methods for the Prediction of Protein-Ligand Binding Sites for Structure-Based Drug Design and Virtual Ligand Screening
-
Laurie, A. T. R.; Jackson, R. M. Methods for the Prediction of Protein-Ligand Binding Sites for Structure-Based Drug Design and Virtual Ligand Screening Curr. Protein Pept. Sci. 2006, 7, 395-406 10.2174/138920306778559386
-
(2006)
Curr. Protein Pept. Sci.
, vol.7
, pp. 395-406
-
-
Laurie, A.T.R.1
Jackson, R.M.2
-
56
-
-
61449104961
-
Fragment-Based Identification of Druggable "hot Spots" of Proteins Using Fourier Domain Correlation Techniques
-
Brenke, R.; Kozakov, D.; Chuang, G.-Y.; Beglov, D.; Hall, D.; Landon, M. R.; Mattos, C.; Vajda, S. Fragment-Based Identification of Druggable "Hot Spots" of Proteins Using Fourier Domain Correlation Techniques Bioinformatics 2009, 25, 621-627 10.1093/bioinformatics/btp036
-
(2009)
Bioinformatics
, vol.25
, pp. 621-627
-
-
Brenke, R.1
Kozakov, D.2
Chuang, G.-Y.3
Beglov, D.4
Hall, D.5
Landon, M.R.6
Mattos, C.7
Vajda, S.8
-
57
-
-
80051966197
-
Structural Conservation of Druggable Hot Spots in Protein-Protein Interfaces
-
Kozakov, D.; Hall, D. R.; Chuang, G.-Y.; Cencic, R.; Brenke, R.; Grove, L. E.; Beglov, D.; Pelletier, J.; Whitty, A.; Vajda, S. Structural Conservation of Druggable Hot Spots in Protein-Protein Interfaces Proc. Natl. Acad. Sci. U. S. A. 2011, 108, 13528-13533 10.1073/pnas.1101835108
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 13528-13533
-
-
Kozakov, D.1
Hall, D.R.2
Chuang, G.-Y.3
Cencic, R.4
Brenke, R.5
Grove, L.E.6
Beglov, D.7
Pelletier, J.8
Whitty, A.9
Vajda, S.10
-
58
-
-
84865494461
-
Relationship between Hot Spot Residues and Ligand Binding Hot Spots in Protein-Protein Interfaces
-
Zerbe, B. S.; Hall, D. R.; Vajda, S.; Whitty, A.; Kozakov, D. Relationship between Hot Spot Residues and Ligand Binding Hot Spots in Protein-Protein Interfaces J. Chem. Inf. Model. 2012, 52, 2236-2244 10.1021/ci300175u
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 2236-2244
-
-
Zerbe, B.S.1
Hall, D.R.2
Vajda, S.3
Whitty, A.4
Kozakov, D.5
-
59
-
-
84858044079
-
Hot Spot Analysis for Driving the Development of Hits into Leads in Fragment-Based Drug Discovery
-
Hall, D. R.; Ngan, C. H.; Zerbe, B. S.; Kozakov, D.; Vajda, S. Hot Spot Analysis for Driving the Development of Hits into Leads in Fragment-Based Drug Discovery J. Chem. Inf. Model. 2012, 52, 199-209 10.1021/ci200468p
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 199-209
-
-
Hall, D.R.1
Ngan, C.H.2
Zerbe, B.S.3
Kozakov, D.4
Vajda, S.5
-
60
-
-
78649499434
-
Analyzing the Topology of Active Sites: On the Prediction of Pockets and Subpockets
-
Volkamer, A.; Griewel, A.; Grombacher, T.; Rarey, M. Analyzing the Topology of Active Sites: On the Prediction of Pockets and Subpockets J. Chem. Inf. Model. 2010, 50, 2041-2052 10.1021/ci100241y
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 2041-2052
-
-
Volkamer, A.1
Griewel, A.2
Grombacher, T.3
Rarey, M.4
-
61
-
-
84857531280
-
Combining Global and Local Measures for Structure-Based Druggability Predictions
-
Volkamer, A.; Kuhn, D.; Grombacher, T.; Rippmann, F.; Rarey, M. Combining Global and Local Measures for Structure-Based Druggability Predictions J. Chem. Inf. Model. 2012, 52, 360-372 10.1021/ci200454v
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 360-372
-
-
Volkamer, A.1
Kuhn, D.2
Grombacher, T.3
Rippmann, F.4
Rarey, M.5
-
62
-
-
84940204987
-
-
Molecular Operating Environment (MOE), 2013.08; Chemical Computing Group, Inc.: Montreal, QC, Canada, 2014
-
Molecular Operating Environment (MOE), 2013.08; Chemical Computing Group, Inc.: Montreal, QC, Canada, 2014.
-
-
-
-
63
-
-
10744221485
-
In Vivo Activation of the p53 Pathway by Small-Molecule Antagonists of MDM2
-
Vassilev, L. T.; Vu, B. T.; Graves, B.; Carvajal, D.; Podlaski, F.; Filipovic, Z.; Kong, N.; Kammlott, U.; Lukacs, C.; Klein, C.; Fotouhi, N.; Liu, E. A. In Vivo Activation of the p53 Pathway by Small-Molecule Antagonists of MDM2 Science 2004, 303, 844-848 10.1126/science.1092472
-
(2004)
Science
, vol.303
, pp. 844-848
-
-
Vassilev, L.T.1
Vu, B.T.2
Graves, B.3
Carvajal, D.4
Podlaski, F.5
Filipovic, Z.6
Kong, N.7
Kammlott, U.8
Lukacs, C.9
Klein, C.10
Fotouhi, N.11
Liu, E.A.12
-
64
-
-
84922813362
-
Small-Molecule Inhibitors of the MDM2-p53 Protein-Protein Interaction (MDM2 Inhibitors) in Clinical Trials for Cancer Treatment
-
Zhao, Y.; Aguilar, A.; Bernard, D.; Wang, S. Small-Molecule Inhibitors of the MDM2-p53 Protein-Protein Interaction (MDM2 Inhibitors) in Clinical Trials for Cancer Treatment J. Med. Chem. 2015, 58, 1038-1052 10.1021/jm501092z
-
(2015)
J. Med. Chem.
, vol.58
, pp. 1038-1052
-
-
Zhao, Y.1
Aguilar, A.2
Bernard, D.3
Wang, S.4
-
65
-
-
0030614915
-
Structure of Bcl-xL-Bak Peptide Complex: Recognition between Regulators of Apoptosis
-
Sattler, M. Structure of Bcl-xL-Bak Peptide Complex: Recognition Between Regulators of Apoptosis Science (Washington, DC, U. S.) 1997, 275, 983-986 10.1126/science.275.5302.983
-
(1997)
Science (Washington, DC, U. S.)
, vol.275
, pp. 983-986
-
-
Sattler, M.1
-
66
-
-
0035150803
-
-
Degterev, A.; Lugovskoy, A.; Cardone, M.; Mulley, B.; Wagner, G.; Mitchison, T.; Yuan, J. Nat. Cell Biol. 2001, 3, 173-182 10.1038/35055085
-
(2001)
Nat. Cell Biol.
, vol.3
, pp. 173-182
-
-
Degterev, A.1
Lugovskoy, A.2
Cardone, M.3
Mulley, B.4
Wagner, G.5
Mitchison, T.6
Yuan, J.7
-
67
-
-
0031687653
-
Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design
-
Liang, J.; Edelsbrunner, H.; Woodward, C. Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design Protein Sci. 1998, 7, 1884-1897 10.1002/pro.5560070905
-
(1998)
Protein Sci.
, vol.7
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
68
-
-
77949743743
-
Atomic Analysis of Protein-Protein Interfaces with Known Inhibitors: The 2P2I Database
-
Bourgeas, R.; Basse, M.-J.; Morelli, X.; Roche, P. Atomic Analysis of Protein-Protein Interfaces with Known Inhibitors: The 2P2I Database PLoS One 2010, 5, e9598 10.1371/journal.pone.0009598
-
(2010)
PLoS One
, vol.5
, pp. 9598
-
-
Bourgeas, R.1
Basse, M.-J.2
Morelli, X.3
Roche, P.4
-
69
-
-
84876546810
-
2P2Idb: A Structural Database Dedicated to Orthosteric Modulation of Protein-Protein Interactions
-
Basse, M. J.; Betzi, S.; Bourgeas, R.; Bouzidi, S.; Chetrit, B.; Hamon, V.; Morelli, X.; Roche, P. 2P2Idb: A Structural Database Dedicated to Orthosteric Modulation of Protein-Protein Interactions Nucleic Acids Res. 2013, 41, D824-D827 10.1093/nar/gks1002
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 824-D827
-
-
Basse, M.J.1
Betzi, S.2
Bourgeas, R.3
Bouzidi, S.4
Chetrit, B.5
Hamon, V.6
Morelli, X.7
Roche, P.8
-
70
-
-
1842850600
-
Voronoi and Voronoi-Related Tessellations in Studies of Protein Structure and Interaction
-
Poupon, A. Voronoi and Voronoi-Related Tessellations in Studies of Protein Structure and Interaction Curr. Opin. Struct. Biol. 2004, 14, 233-241 10.1016/j.sbi.2004.03.010
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 233-241
-
-
Poupon, A.1
-
71
-
-
0015977588
-
The Interpretation of Protein Structures: Total Volume, Group Volume Distributions and Packing Density
-
Richards, F. M. The Interpretation of Protein Structures: Total Volume, Group Volume Distributions and Packing Density J. Mol. Biol. 1974, 82, 1-14 10.1016/0022-2836(74)90570-1
-
(1974)
J. Mol. Biol.
, vol.82
, pp. 1-14
-
-
Richards, F.M.1
-
72
-
-
0030381077
-
The Quickhull Algorithm for Convex Hulls
-
Barber, C. B.; Dobkin, D. P.; Huhdanpaa, H. The Quickhull Algorithm for Convex Hulls ACM Trans. Math. Softw. 1996, 22, 469-483 10.1145/235815.235821
-
(1996)
ACM Trans. Math. Softw.
, vol.22
, pp. 469-483
-
-
Barber, C.B.1
Dobkin, D.P.2
Huhdanpaa, H.3
-
75
-
-
33846155913
-
Structure-Based Maximal Affinity Model Predicts Small-Molecule Druggability
-
Cheng, A. C.; Coleman, R. G.; Smyth, K. T.; Cao, Q.; Soulard, P.; Caffrey, D. R.; Salzberg, A. C.; Huang, E. S. Structure-Based Maximal Affinity Model Predicts Small-Molecule Druggability Nat. Biotechnol. 2007, 25, 71-75 10.1038/nbt1273
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 71-75
-
-
Cheng, A.C.1
Coleman, R.G.2
Smyth, K.T.3
Cao, Q.4
Soulard, P.5
Caffrey, D.R.6
Salzberg, A.C.7
Huang, E.S.8
-
76
-
-
34547583152
-
Transient Pockets on Protein Surfaces Involved in Protein-Protein Interaction
-
Eyrisch, S.; Helms, V. Transient Pockets on Protein Surfaces Involved in Protein-Protein Interaction J. Med. Chem. 2007, 50, 3457-3464 10.1021/jm070095g
-
(2007)
J. Med. Chem.
, vol.50
, pp. 3457-3464
-
-
Eyrisch, S.1
Helms, V.2
-
77
-
-
3843091516
-
Anchor Residues in Protein-Protein Interactions
-
Rajamani, D.; Thiel, S.; Vajda, S.; Camacho, C. J. Anchor Residues in Protein-Protein Interactions Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 11287-11292 10.1073/pnas.0401942101
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 11287-11292
-
-
Rajamani, D.1
Thiel, S.2
Vajda, S.3
Camacho, C.J.4
-
78
-
-
77954260900
-
ANCHOR: A Web Server and Database for Analysis of Protein-Protein Interaction Binding Pockets for Drug Discovery
-
Meireles, L. M. C.; Dömling, A. S.; Camacho, C. J. ANCHOR: A Web Server and Database for Analysis of Protein-Protein Interaction Binding Pockets for Drug Discovery Nucleic Acids Res. 2010, 38, W407-W411 10.1093/nar/gkq502
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 407-W411
-
-
Meireles, L.M.C.1
Dömling, A.S.2
Camacho, C.J.3
-
79
-
-
84929493992
-
Ligand Deconstruction: Why Some Fragment Binding Positions Are Conserved and Others Are Not
-
Kozakov, D.; Hall, D. R.; Jehle, S.; Luo, L.; Ochiana, S. O.; Jones, E. V.; Pollastri, M.; Allen, K. N.; Whitty, A.; Vajda, S. Ligand Deconstruction: Why Some Fragment Binding Positions Are Conserved and Others Are Not Proc. Natl. Acad. Sci. U. S. A. 2015, 112, E2585-E2594 10.1073/pnas.1501567112
-
(2015)
Proc. Natl. Acad. Sci. U. S. A.
, vol.112
, pp. 2585-E2594
-
-
Kozakov, D.1
Hall, D.R.2
Jehle, S.3
Luo, L.4
Ochiana, S.O.5
Jones, E.V.6
Pollastri, M.7
Allen, K.N.8
Whitty, A.9
Vajda, S.10
-
80
-
-
84895779578
-
Drugging the p53 Pathway: Understanding the Route to Clinical Efficacy
-
Khoo, K. H.; Hoe, K. K.; Verma, C. S.; Lane, D. P. Drugging the p53 Pathway: Understanding the Route to Clinical Efficacy Nat. Rev. Drug Discovery 2014, 13, 217-236 10.1038/nrd4236
-
(2014)
Nat. Rev. Drug Discovery
, vol.13
, pp. 217-236
-
-
Khoo, K.H.1
Hoe, K.K.2
Verma, C.S.3
Lane, D.P.4
-
81
-
-
77951766329
-
Systematic Mutational Analysis of Peptide Inhibition of the p53-MDM2/MDMX Interactions
-
Li, C.; Pazgier, M.; Li, C.; Yuan, W.; Liu, M.; Wei, G.; Lu, W.-Y.; Lu, W. Systematic Mutational Analysis of Peptide Inhibition of the p53-MDM2/MDMX Interactions J. Mol. Biol. 2010, 398, 200-213 10.1016/j.jmb.2010.03.005
-
(2010)
J. Mol. Biol.
, vol.398
, pp. 200-213
-
-
Li, C.1
Pazgier, M.2
Li, C.3
Yuan, W.4
Liu, M.5
Wei, G.6
Lu, W.-Y.7
Lu, W.8
-
82
-
-
84862296171
-
Structure-Based Design of Novel Inhibitors of the MDM2-p53 Interaction
-
Rew, Y.; Sun, D.; Gonzalez-Lopez De Turiso, F.; Bartberger, M. D.; Beck, H. P.; Canon, J.; Chen, A.; Chow, D.; Deignan, J.; Fox, B. M.; Gustin, D.; Huang, X.; Jiang, M.; Jiao, X.; Jin, L.; Kayser, F.; Kopecky, D. J.; Li, Y.; Lo, M.-C.; Long, A. M.; Michelsen, K.; Oliner, J. D.; Osgood, T.; Ragains, M.; Saiki, A. Y.; Schneider, S.; Toteva, M.; Yakowec, P.; Yan, X.; Ye, Q.; Yu, D.; Zhao, X.; Zhou, J.; Medina, J. C.; Olson, S. H. Structure-Based Design of Novel Inhibitors of the MDM2-p53 Interaction J. Med. Chem. 2012, 55, 4936-4954 10.1021/jm300354j
-
(2012)
J. Med. Chem.
, vol.55
, pp. 4936-4954
-
-
Rew, Y.1
Sun, D.2
Gonzalez-Lopez De Turiso, F.3
Bartberger, M.D.4
Beck, H.P.5
Canon, J.6
Chen, A.7
Chow, D.8
Deignan, J.9
Fox, B.M.10
Gustin, D.11
Huang, X.12
Jiang, M.13
Jiao, X.14
Jin, L.15
Kayser, F.16
Kopecky, D.J.17
Li, Y.18
Lo, M.-C.19
Long, A.M.20
Michelsen, K.21
Oliner, J.D.22
Osgood, T.23
Ragains, M.24
Saiki, A.Y.25
Schneider, S.26
Toteva, M.27
Yakowec, P.28
Yan, X.29
Ye, Q.30
Yu, D.31
Zhao, X.32
Zhou, J.33
Medina, J.C.34
Olson, S.H.35
more..
-
83
-
-
77952331776
-
A Left-Handed Solution to Peptide Inhibition of the p53-MDM2 Interaction
-
Liu, M.; Pazgier, M.; Li, C.; Yuan, W.; Li, C.; Lu, W. A Left-Handed Solution to Peptide Inhibition of the p53-MDM2 Interaction Angew. Chem., Int. Ed. 2010, 49, 3649-3652 10.1002/anie.201000329
-
(2010)
Angew. Chem., Int. Ed.
, vol.49
, pp. 3649-3652
-
-
Liu, M.1
Pazgier, M.2
Li, C.3
Yuan, W.4
Li, C.5
Lu, W.6
-
84
-
-
84863855845
-
An Ultrahigh Affinity D-Peptide Antagonist of MDM2
-
Zhan, C.; Zhao, L.; Wei, X.; Wu, X.; Chen, X.; Yuan, W.; Lu, W.-Y.; Pazgier, M.; Lu, W. An Ultrahigh Affinity D-Peptide Antagonist Of MDM2 J. Med. Chem. 2012, 55, 6237-6241 10.1021/jm3005465
-
(2012)
J. Med. Chem.
, vol.55
, pp. 6237-6241
-
-
Zhan, C.1
Zhao, L.2
Wei, X.3
Wu, X.4
Chen, X.5
Yuan, W.6
Lu, W.-Y.7
Pazgier, M.8
Lu, W.9
-
85
-
-
0030575937
-
Structure of the MDM2 Oncoprotein Bound to the p53 Tumor Suppressor Transactivation Domain
-
Kussie, P. H.; Gorina, S.; Marechal, V.; Elenbaas, B.; Moreau, J.; Levine, A. J.; Pavletich, N. P. Structure of the MDM2 Oncoprotein Bound to the p53 Tumor Suppressor Transactivation Domain Science 1996, 274, 948-953 10.1126/science.274.5289.948
-
(1996)
Science
, vol.274
, pp. 948-953
-
-
Kussie, P.H.1
Gorina, S.2
Marechal, V.3
Elenbaas, B.4
Moreau, J.5
Levine, A.J.6
Pavletich, N.P.7
-
86
-
-
20444463203
-
Structure of Free MDM2 N-Terminal Domain Reveals Conformational Adjustments That Accompany p53-Binding
-
Uhrinova, S.; Uhrin, D.; Powers, H.; Watt, K.; Zheleva, D.; Fischer, P.; McInnes, C.; Barlow, P. N. Structure of Free MDM2 N-Terminal Domain Reveals Conformational Adjustments That Accompany p53-Binding J. Mol. Biol. 2005, 350, 587-598 10.1016/j.jmb.2005.05.010
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 587-598
-
-
Uhrinova, S.1
Uhrin, D.2
Powers, H.3
Watt, K.4
Zheleva, D.5
Fischer, P.6
McInnes, C.7
Barlow, P.N.8
-
87
-
-
0027944205
-
Synthesis of Proteins by Native Chemical Ligation
-
Dawson, P.; Muir, T.; Clark-Lewis, I.; Kent, S. Synthesis of Proteins by Native Chemical Ligation Science (Washington, DC, U. S.) 1994, 266, 776-779 10.1126/science.7973629
-
(1994)
Science (Washington, DC, U. S.)
, vol.266
, pp. 776-779
-
-
Dawson, P.1
Muir, T.2
Clark-Lewis, I.3
Kent, S.4
-
88
-
-
84865494461
-
Relationship between Hot Spot Residues and Ligand Binding Hot Spots in Protein-Protein Interfaces
-
Zerbe, B. S.; Hall, D. R.; Vajda, S.; Whitty, A.; Kozakov, D. Relationship between Hot Spot Residues and Ligand Binding Hot Spots in Protein-Protein Interfaces J. Chem. Inf. Model. 2012, 52, 2236-2244 10.1021/ci300175u
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 2236-2244
-
-
Zerbe, B.S.1
Hall, D.R.2
Vajda, S.3
Whitty, A.4
Kozakov, D.5
-
89
-
-
0016708122
-
Principles of Protein-Protein Recognition
-
Chothia, C.; Janin, J. Principles of Protein-Protein Recognition Nature 1975, 256, 705-708 10.1038/256705a0
-
(1975)
Nature
, vol.256
, pp. 705-708
-
-
Chothia, C.1
Janin, J.2
-
90
-
-
84860838201
-
Structure-Based Computational Analysis of Protein Binding Sites for Function and Druggability Prediction
-
Nisius, B.; Sha, F.; Gohlke, H. Structure-Based Computational Analysis of Protein Binding Sites for Function and Druggability Prediction J. Biotechnol. 2012, 159, 123-134 10.1016/j.jbiotec.2011.12.005
-
(2012)
J. Biotechnol.
, vol.159
, pp. 123-134
-
-
Nisius, B.1
Sha, F.2
Gohlke, H.3
-
91
-
-
84872225092
-
On the Binding Affinity of Macromolecular Interactions: Daring to Ask Why Proteins Interact
-
Kastritis, P. L.; Bonvin, A. M. J. J. On the Binding Affinity of Macromolecular Interactions: Daring to Ask Why Proteins Interact J. R. Soc., Interface 2012, 10, 20120835 10.1098/rsif.2012.0835
-
(2012)
J. R. Soc., Interface
, vol.10
, pp. 20120835
-
-
Kastritis, P.L.1
Bonvin, A.M.J.J.2
-
92
-
-
84902438255
-
Improved Protein-Ligand Binding Affinity Prediction by Using a Curvature-Dependent Surface-Area Model
-
Cao, Y.; Li, L. Improved Protein-Ligand Binding Affinity Prediction by Using a Curvature-Dependent Surface-Area Model Bioinformatics 2014, 30, 1674-1680 10.1093/bioinformatics/btu104
-
(2014)
Bioinformatics
, vol.30
, pp. 1674-1680
-
-
Cao, Y.1
Li, L.2
-
93
-
-
4444221565
-
UCSF Chimera - A Visualization System for Exploratory Research and Analysis
-
Pettersen, E. F.; Goddard, T. D.; Huang, C. C.; Couch, G. S.; Greenblatt, D. M.; Meng, E. C.; Ferrin, T. E. UCSF Chimera - a Visualization System for Exploratory Research and Analysis J. Comput. Chem. 2004, 25, 1605-1612 10.1002/jcc.20084
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
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