-
2
-
-
84893811752
-
Three keys to the radiation of angiosperms into freezing environments
-
Zanne A.E., et al. Three keys to the radiation of angiosperms into freezing environments. Nature 2014, 506:89-92.
-
(2014)
Nature
, vol.506
, pp. 89-92
-
-
Zanne, A.E.1
-
3
-
-
84876529549
-
The tree of life and a new classification of bony fishes
-
Published online April 18, 2013
-
Betancur-R R., et al. The tree of life and a new classification of bony fishes. PLoS Curr. 2013, Published online April 18, 2013. 10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288.
-
(2013)
PLoS Curr.
-
-
Betancur-R, R.1
-
4
-
-
84920887826
-
Building the avian tree of life using a large-scale, sparse supermatrix
-
Burleigh J.G., et al. Building the avian tree of life using a large-scale, sparse supermatrix. Mol. Phylogenet. Evol. 2014, 84C:53-63.
-
(2014)
Mol. Phylogenet. Evol.
, vol.84C
, pp. 53-63
-
-
Burleigh, J.G.1
-
5
-
-
80052717965
-
A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
-
Pyron R.A., Wiens J.J. A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol. Phylogenet. Evol. 2011, 61:543-583.
-
(2011)
Mol. Phylogenet. Evol.
, vol.61
, pp. 543-583
-
-
Pyron, R.A.1
Wiens, J.J.2
-
6
-
-
84876805079
-
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
-
Pyron R.A., et al. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evol. Biol. 2013, 13:93.
-
(2013)
BMC Evol. Biol.
, vol.13
, pp. 93
-
-
Pyron, R.A.1
-
7
-
-
34047108602
-
The delayed rise of present-day mammals
-
Bininda-Emonds O.R.P., et al. The delayed rise of present-day mammals. Nature 2007, 446:507-512.
-
(2007)
Nature
, vol.446
, pp. 507-512
-
-
Bininda-Emonds, O.R.P.1
-
8
-
-
84888626247
-
High-throughput genomic data in systematics and phylogenetics
-
Lemmon E.M., Lemmon A.R. High-throughput genomic data in systematics and phylogenetics. Annu. Rev. Ecol. Evol. Syst. 2013, 44:99-121.
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 99-121
-
-
Lemmon, E.M.1
Lemmon, A.R.2
-
9
-
-
84913531711
-
Intrinsic inference difficulties for trait evolution with Ornstein-Uhlenbeck models
-
Ho L.S.T., Ane C. Intrinsic inference difficulties for trait evolution with Ornstein-Uhlenbeck models. Methods Ecol. Evol. 2014, 5:1133-1146.
-
(2014)
Methods Ecol. Evol.
, vol.5
, pp. 1133-1146
-
-
Ho, L.S.T.1
Ane, C.2
-
10
-
-
84937066947
-
Model adequacy and the macroevolution of angiosperm functional traits
-
Published online April 7, 2014
-
Pennell M.W., et al. Model adequacy and the macroevolution of angiosperm functional traits. Am. Nat. 2014, Published online April 7, 2014. 10.1086/682022.
-
(2014)
Am. Nat.
-
-
Pennell, M.W.1
-
11
-
-
84964267412
-
Model inadequacy and mistaken inferences of trait-dependent speciation
-
Rabosky D.L., Goldberg E.E. Model inadequacy and mistaken inferences of trait-dependent speciation. Syst. Biol. 2015, 64:340-355.
-
(2015)
Syst. Biol.
, vol.64
, pp. 340-355
-
-
Rabosky, D.L.1
Goldberg, E.E.2
-
12
-
-
84923404983
-
The unsolved challenge to phylogenetic correlation tests for categorical characters
-
Maddison W.P., FitzJohn R.G. The unsolved challenge to phylogenetic correlation tests for categorical characters. Syst. Biol. 2014, 64:127-136.
-
(2014)
Syst. Biol.
, vol.64
, pp. 127-136
-
-
Maddison, W.P.1
FitzJohn, R.G.2
-
13
-
-
58249100073
-
Is a new and general theory of molecular systematics emerging?
-
Edwards S.V. Is a new and general theory of molecular systematics emerging?. Evolution 2009, 63:1-19.
-
(2009)
Evolution
, vol.63
, pp. 1-19
-
-
Edwards, S.V.1
-
14
-
-
84910635621
-
Phylogenomic interrogation of Arachnida reveals systemic conflicts in phylogenetic signal
-
Sharma P.P., et al. Phylogenomic interrogation of Arachnida reveals systemic conflicts in phylogenetic signal. Mol. Biol. Evol. 2014, 31:2963-2984.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 2963-2984
-
-
Sharma, P.P.1
-
15
-
-
84908603912
-
Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia)
-
Pyron R.A., et al. Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia). Mol. Phylogenet. Evol. 2014, 81:221-231.
-
(2014)
Mol. Phylogenet. Evol.
, vol.81
, pp. 221-231
-
-
Pyron, R.A.1
-
16
-
-
33645850710
-
Phylogenomics: the beginning of incongruence?
-
Jeffroy O., et al. Phylogenomics: the beginning of incongruence?. Trends Genet. 2006, 22:225-231.
-
(2006)
Trends Genet.
, vol.22
, pp. 225-231
-
-
Jeffroy, O.1
-
17
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
Aguinaldo A.M.A., et al. Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 1997, 387:489-493.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.A.1
-
18
-
-
84864380129
-
Amniote phylogeny and the position of turtles
-
Hedges S.B. Amniote phylogeny and the position of turtles. BMC Biol. 2012, 10:64.
-
(2012)
BMC Biol.
, vol.10
, pp. 64
-
-
Hedges, S.B.1
-
20
-
-
9644269182
-
Molecular phylogenetics of Squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree
-
Townsend T.M., et al. Molecular phylogenetics of Squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree. Syst. Biol. 2004, 53:735-757.
-
(2004)
Syst. Biol.
, vol.53
, pp. 735-757
-
-
Townsend, T.M.1
-
21
-
-
33745748862
-
The amphibian tree of life
-
Frost D.R., et al. The amphibian tree of life. Bull. Am. Mus. Nat. Hist. 2006, 297:8-370.
-
(2006)
Bull. Am. Mus. Nat. Hist.
, vol.297
, pp. 8-370
-
-
Frost, D.R.1
-
22
-
-
84865382153
-
More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs
-
Crawford N.G., et al. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biol. Lett. 2012, 8:783-786.
-
(2012)
Biol. Lett.
, vol.8
, pp. 783-786
-
-
Crawford, N.G.1
-
23
-
-
84869787270
-
Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species
-
Wiens J.J., et al. Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species. Biol. Lett. 2012, 8:1043-1046.
-
(2012)
Biol. Lett.
, vol.8
, pp. 1043-1046
-
-
Wiens, J.J.1
-
24
-
-
70450265498
-
Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design
-
McCormack J.E., et al. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design. Syst. Biol. 2009, 58:501-508.
-
(2009)
Syst. Biol.
, vol.58
, pp. 501-508
-
-
McCormack, J.E.1
-
25
-
-
84917738231
-
A flock of genomes
-
Zhang G.J., et al. A flock of genomes. Science 2014, 346:1308-1309.
-
(2014)
Science
, vol.346
, pp. 1308-1309
-
-
Zhang, G.J.1
-
26
-
-
77958144939
-
A phylogenomic approach to resolve the arthropod tree of life
-
Meusemann K., et al. A phylogenomic approach to resolve the arthropod tree of life. Mol. Biol. Evol. 2010, 27:2451-2464.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 2451-2464
-
-
Meusemann, K.1
-
27
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
Dunn C.W., et al. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 2008, 452:745-749.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
-
28
-
-
84959509125
-
The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)
-
Published online March 19, 2015
-
Peloso P.L.V., et al. The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae). Cladistics 2015, Published online March 19, 2015. 10.1111/cla.12118.
-
(2015)
Cladistics
-
-
Peloso, P.L.V.1
-
29
-
-
84909606775
-
Phylogenomics resolves the timing and pattern of insect evolution
-
Misof B., et al. Phylogenomics resolves the timing and pattern of insect evolution. Science 2014, 346:763-767.
-
(2014)
Science
, vol.346
, pp. 763-767
-
-
Misof, B.1
-
30
-
-
83555166100
-
Resolving the evolutionary relationships of molluscs with phylogenomic tools
-
Smith S.A., et al. Resolving the evolutionary relationships of molluscs with phylogenomic tools. Nature 2011, 480:364-367.
-
(2011)
Nature
, vol.480
, pp. 364-367
-
-
Smith, S.A.1
-
31
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A., et al. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 2003, 425:798-804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
-
32
-
-
17744394753
-
Phylogenomics and the reconstruction of the tree of life
-
Delsuc F., et al. Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 2005, 6:361-375.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 361-375
-
-
Delsuc, F.1
-
33
-
-
33751039720
-
Bushes in the tree of life
-
Rokas A., Carroll S.B. Bushes in the tree of life. PLoS Biol. 2006, 4:1899-1904.
-
(2006)
PLoS Biol.
, vol.4
, pp. 1899-1904
-
-
Rokas, A.1
Carroll, S.B.2
-
34
-
-
84867733760
-
Phylogenetic analysis of genome rearrangements among five mammalian orders
-
Luo H.W., et al. Phylogenetic analysis of genome rearrangements among five mammalian orders. Mol. Phylogenet. Evol. 2012, 65:871-882.
-
(2012)
Mol. Phylogenet. Evol.
, vol.65
, pp. 871-882
-
-
Luo, H.W.1
-
35
-
-
80052752932
-
Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation
-
Townsend T.M., et al. Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation. Mol. Phylogenet. Evol. 2011, 61:363-380.
-
(2011)
Mol. Phylogenet. Evol.
, vol.61
, pp. 363-380
-
-
Townsend, T.M.1
-
36
-
-
84922680916
-
Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies
-
Lanier H.C., Knowles L.L. Applying species-tree analyses to deep phylogenetic histories: challenges and potential suggested from a survey of empirical phylogenetic studies. Mol. Phylogenet. Evol. 2015, 83:191-199.
-
(2015)
Mol. Phylogenet. Evol.
, vol.83
, pp. 191-199
-
-
Lanier, H.C.1
Knowles, L.L.2
-
37
-
-
84938985774
-
Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards
-
Brandley M.C., et al. Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards. BMC Evol. Biol. 2015, 15:62.
-
(2015)
BMC Evol. Biol.
, vol.15
, pp. 62
-
-
Brandley, M.C.1
-
38
-
-
84872480881
-
Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
-
Wagner C.E., et al. Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation. Mol. Ecol. 2013, 22:787-798.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 787-798
-
-
Wagner, C.E.1
-
39
-
-
84872864542
-
Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex
-
O'Neill E.M., et al. Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. Mol. Ecol. 2013, 22:111-129.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 111-129
-
-
O'Neill, E.M.1
-
40
-
-
79251553493
-
Comparative and demographic analysis of orang-utan genomes
-
Locke D.P., et al. Comparative and demographic analysis of orang-utan genomes. Nature 2011, 469:529-533.
-
(2011)
Nature
, vol.469
, pp. 529-533
-
-
Locke, D.P.1
-
41
-
-
73449149044
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
-
Gutenkunst R.N., et al. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 2009, 5:e1000695.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000695
-
-
Gutenkunst, R.N.1
-
42
-
-
84866863890
-
Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion
-
Lukic S., Hey J. Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion. Genetics 2012, 192:619-639.
-
(2012)
Genetics
, vol.192
, pp. 619-639
-
-
Lukic, S.1
Hey, J.2
-
43
-
-
77749261628
-
Estimating divergence parameters with small samples from a large number of loci
-
Wang Y., Hey J. Estimating divergence parameters with small samples from a large number of loci. Genetics 2010, 184:363-379.
-
(2010)
Genetics
, vol.184
, pp. 363-379
-
-
Wang, Y.1
Hey, J.2
-
44
-
-
84884588405
-
Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory
-
Cutter A.D. Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory. Mol. Phylogenet. Evol. 2013, 69:1172-1185.
-
(2013)
Mol. Phylogenet. Evol.
, vol.69
, pp. 1172-1185
-
-
Cutter, A.D.1
-
45
-
-
84902519363
-
Species delimitation using genome-wide SNP data
-
Leache A.D., et al. Species delimitation using genome-wide SNP data. Syst. Biol. 2014, 63:534-542.
-
(2014)
Syst. Biol.
, vol.63
, pp. 534-542
-
-
Leache, A.D.1
-
46
-
-
84878019197
-
Understanding the origin of species with genome-scale data: modelling gene flow
-
Sousa V., Hey J. Understanding the origin of species with genome-scale data: modelling gene flow. Nat. Rev. Genet. 2013, 14:404-414.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 404-414
-
-
Sousa, V.1
Hey, J.2
-
47
-
-
84896883450
-
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
-
Castoe T.A., et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:3194.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 3194
-
-
Castoe, T.A.1
-
48
-
-
67049119180
-
Evidence for an ancient adaptive episode of convergent molecular evolution
-
Castoe T.A., et al. Evidence for an ancient adaptive episode of convergent molecular evolution. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:8986-8991.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 8986-8991
-
-
Castoe, T.A.1
-
49
-
-
84885574505
-
Genome-wide signatures of convergent evolution in echolocating mammals
-
Parker J., et al. Genome-wide signatures of convergent evolution in echolocating mammals. Nature 2013, 502:228-231.
-
(2013)
Nature
, vol.502
, pp. 228-231
-
-
Parker, J.1
-
50
-
-
84924078627
-
Convergent evolution of the genomes of marine mammals
-
Foote A.D., et al. Convergent evolution of the genomes of marine mammals. Nat. Genet. 2015, 47:272-275.
-
(2015)
Nat. Genet.
, vol.47
, pp. 272-275
-
-
Foote, A.D.1
-
51
-
-
84929761842
-
Transcriptomics of developing embryos and organs: a raising tool for evo-devo
-
Published online November 11, 2014
-
Pantalacci S., Semon M. Transcriptomics of developing embryos and organs: a raising tool for evo-devo. J. Exp. Zool. B Mol. Dev. Evol. 2014, Published online November 11, 2014. 10.1002/.22595.
-
(2014)
J. Exp. Zool. B Mol. Dev. Evol.
-
-
Pantalacci, S.1
Semon, M.2
-
52
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein J. Phylogenies and the comparative method. Am. Nat. 1985, 125:1-15.
-
(1985)
Am. Nat.
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
53
-
-
84855405271
-
A comparative method for both discrete and continuous characters using the threshold model
-
Felsenstein J. A comparative method for both discrete and continuous characters using the threshold model. Am. Nat. 2012, 179:145-156.
-
(2012)
Am. Nat.
, vol.179
, pp. 145-156
-
-
Felsenstein, J.1
-
54
-
-
84888132475
-
Phylogenetic estimates of speciation and extinction rates for testing ecological and evolutionary hypotheses
-
Pyron R.A., Burbrink F.T. Phylogenetic estimates of speciation and extinction rates for testing ecological and evolutionary hypotheses. Trends Ecol. Evol. 2013, 28:729-736.
-
(2013)
Trends Ecol. Evol.
, vol.28
, pp. 729-736
-
-
Pyron, R.A.1
Burbrink, F.T.2
-
55
-
-
36249028141
-
Estimating diversification rates from phylogenetic information
-
Ricklefs R.E. Estimating diversification rates from phylogenetic information. Trends Ecol. Evol. 2007, 22:601-610.
-
(2007)
Trends Ecol. Evol.
, vol.22
, pp. 601-610
-
-
Ricklefs, R.E.1
-
56
-
-
78149409895
-
Poor statistical performance of the Mantel test in phylogenetic comparative analyses
-
Harmon L.J., Glor R.E. Poor statistical performance of the Mantel test in phylogenetic comparative analyses. Evolution 2010, 64:2173-2178.
-
(2010)
Evolution
, vol.64
, pp. 2173-2178
-
-
Harmon, L.J.1
Glor, R.E.2
-
57
-
-
84896270571
-
Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees
-
Rabosky D.L. Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. PLoS ONE 2014, 9:e89543.
-
(2014)
PLoS ONE
, vol.9
, pp. e89543
-
-
Rabosky, D.L.1
-
58
-
-
84927912076
-
Extinction can be estimated from moderately sized molecular phylogenies
-
Beaulieu J.M., O'Meara B.C. Extinction can be estimated from moderately sized molecular phylogenies. Evolution 2015, 69:1036-1043.
-
(2015)
Evolution
, vol.69
, pp. 1036-1043
-
-
Beaulieu, J.M.1
O'Meara, B.C.2
-
59
-
-
84929509741
-
Approximate Bayesian Computation of diversification rates from molecular phylogenies: introducing a new efficient summary statistic, the nLTT
-
Published online March 11, 2015
-
Janzen T., et al. Approximate Bayesian Computation of diversification rates from molecular phylogenies: introducing a new efficient summary statistic, the nLTT. Methods Ecol. Evol. 2015, Published online March 11, 2015. 10.1111/2041-210X.12350.
-
(2015)
Methods Ecol. Evol.
-
-
Janzen, T.1
-
60
-
-
84931596160
-
How well can we detect shifts in rates of lineage diversification?. A simulation study of sequential AIC methods
-
Published online November 15, 2014
-
May M.R., Moore B.R. How well can we detect shifts in rates of lineage diversification?. A simulation study of sequential AIC methods. Biorxiv 2014, Published online November 15, 2014. 10.1101/011452.
-
(2014)
Biorxiv
-
-
May, M.R.1
Moore, B.R.2
-
61
-
-
84937523043
-
Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice
-
Pennell M.W. Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice. Syst. Biol. 2015, 64:161-163.
-
(2015)
Syst. Biol.
, vol.64
, pp. 161-163
-
-
Pennell, M.W.1
-
62
-
-
0031880429
-
Reconstructing ancestral character states: a critical reappraisal
-
Cunningham C.W., et al. Reconstructing ancestral character states: a critical reappraisal. Trends Ecol. Evol. 1998, 13:361-366.
-
(1998)
Trends Ecol. Evol.
, vol.13
, pp. 361-366
-
-
Cunningham, C.W.1
-
63
-
-
77952051550
-
Early bursts of body size and shape evolution are rare in comparative data
-
Harmon L.J., et al. Early bursts of body size and shape evolution are rare in comparative data. Evolution 2010, 64:2385-2396.
-
(2010)
Evolution
, vol.64
, pp. 2385-2396
-
-
Harmon, L.J.1
-
64
-
-
84896734858
-
Ancestral character estimation under the threshold model from quantitative genetics
-
Revell L.J. Ancestral character estimation under the threshold model from quantitative genetics. Evolution 2014, 68:743-759.
-
(2014)
Evolution
, vol.68
, pp. 743-759
-
-
Revell, L.J.1
-
65
-
-
84894575492
-
Coalescent species delimitation in milksnakes (genus Lampropeltis) and impacts on phylogenetic comparative analyses
-
Ruane S., et al. Coalescent species delimitation in milksnakes (genus Lampropeltis) and impacts on phylogenetic comparative analyses. Syst. Biol. 2014, 63:231-250.
-
(2014)
Syst. Biol.
, vol.63
, pp. 231-250
-
-
Ruane, S.1
-
66
-
-
79960028708
-
The impact of gene-tree/species-tree discordance on diversification-rate estimation
-
Burbrink F.T., Pyron R.A. The impact of gene-tree/species-tree discordance on diversification-rate estimation. Evolution 2011, 65:1851-1861.
-
(2011)
Evolution
, vol.65
, pp. 1851-1861
-
-
Burbrink, F.T.1
Pyron, R.A.2
-
67
-
-
79251508346
-
Estimating diversification rates: how useful are divergence times?
-
Wertheim J.O., Sanderson M.J. Estimating diversification rates: how useful are divergence times?. Evolution 2011, 65:309-320.
-
(2011)
Evolution
, vol.65
, pp. 309-320
-
-
Wertheim, J.O.1
Sanderson, M.J.2
-
68
-
-
0024894394
-
The importance of fossils in phylogeny reconstruction
-
Donoghue M.J., et al. The importance of fossils in phylogeny reconstruction. Annu. Rev. Ecol. Syst. 1989, 20:431-460.
-
(1989)
Annu. Rev. Ecol. Syst.
, vol.20
, pp. 431-460
-
-
Donoghue, M.J.1
-
69
-
-
0041568323
-
Phylogeny reconstruction: the role of morphology
-
Scotland R.W., et al. Phylogeny reconstruction: the role of morphology. Syst. Biol. 2003, 52:539-548.
-
(2003)
Syst. Biol.
, vol.52
, pp. 539-548
-
-
Scotland, R.W.1
-
70
-
-
79959381301
-
Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia
-
Pyron R.A. Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia. Syst. Biol. 2011, 60:466-481.
-
(2011)
Syst. Biol.
, vol.60
, pp. 466-481
-
-
Pyron, R.A.1
-
71
-
-
84860159826
-
A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera
-
Ronquist F., et al. A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera. Syst. Biol. 2012, 61:973-999.
-
(2012)
Syst. Biol.
, vol.61
, pp. 973-999
-
-
Ronquist, F.1
-
72
-
-
78651454774
-
Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa
-
Wiens J.J., et al. Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa. Syst. Biol. 2010, 59:674-688.
-
(2010)
Syst. Biol.
, vol.59
, pp. 674-688
-
-
Wiens, J.J.1
-
73
-
-
84937538097
-
Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data
-
Wright A.M., Hillis D.M. Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data. PLoS ONE 2014, 9:e109210.
-
(2014)
PLoS ONE
, vol.9
, pp. e109210
-
-
Wright, A.M.1
Hillis, D.M.2
-
74
-
-
84876714242
-
When can clades be potentially resolved with morphology?
-
Bapst D.W. When can clades be potentially resolved with morphology?. PLoS ONE 2013, 8:e62312.
-
(2013)
PLoS ONE
, vol.8
, pp. e62312
-
-
Bapst, D.W.1
-
75
-
-
84881605948
-
Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution
-
Slater G.J., Harmon L.J. Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution. Methods Ecol. Evol. 2013, 4:699-702.
-
(2013)
Methods Ecol. Evol.
, vol.4
, pp. 699-702
-
-
Slater, G.J.1
Harmon, L.J.2
-
76
-
-
84901236518
-
Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution
-
Mitchell K.J., et al. Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution. Science 2014, 344:898-900.
-
(2014)
Science
, vol.344
, pp. 898-900
-
-
Mitchell, K.J.1
-
77
-
-
2642553790
-
Can extinction rates be estimated without fossils?
-
Paradis E. Can extinction rates be estimated without fossils?. J. Theor. Biol. 2004, 229:19-30.
-
(2004)
J. Theor. Biol.
, vol.229
, pp. 19-30
-
-
Paradis, E.1
-
78
-
-
84927125660
-
Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes
-
Betancur-R R., et al. Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes. Ecol. Lett. 2015, 18:441-450.
-
(2015)
Ecol. Lett.
, vol.18
, pp. 441-450
-
-
Betancur-R, R.1
-
79
-
-
0036980140
-
Boolean logic and character state identity: pitfalls of character coding in metazoan cladistics
-
Jenner R.A. Boolean logic and character state identity: pitfalls of character coding in metazoan cladistics. Contrib. Zool. 2002, 71:67-91.
-
(2002)
Contrib. Zool.
, vol.71
, pp. 67-91
-
-
Jenner, R.A.1
-
80
-
-
76749114695
-
Non-random decay of chordate characters causes bias in fossil interpretation
-
Sansom R.S., et al. Non-random decay of chordate characters causes bias in fossil interpretation. Nature 2010, 463:797-800.
-
(2010)
Nature
, vol.463
, pp. 797-800
-
-
Sansom, R.S.1
-
81
-
-
84902439951
-
Integrating incomplete fossils by isolating conflicting signal in saturated and non-independent morphological characters
-
Davalos L.M., et al. Integrating incomplete fossils by isolating conflicting signal in saturated and non-independent morphological characters. Syst. Biol. 2014, 63:582-600.
-
(2014)
Syst. Biol.
, vol.63
, pp. 582-600
-
-
Davalos, L.M.1
-
82
-
-
84925424118
-
Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa
-
Reeder T.W., et al. Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa. PLoS ONE 2015, 10:e0118199.
-
(2015)
PLoS ONE
, vol.10
, pp. e0118199
-
-
Reeder, T.W.1
-
83
-
-
0025624319
-
Character definitions and character state delineation: the bête noire of phylogenetic inference
-
Pogue M.G., Mickevich M.F. Character definitions and character state delineation: the bête noire of phylogenetic inference. Cladistics 1990, 6:319-361.
-
(1990)
Cladistics
, vol.6
, pp. 319-361
-
-
Pogue, M.G.1
Mickevich, M.F.2
-
84
-
-
0035527396
-
A likelihood approach to estimating phylogeny from discrete morphological character data
-
Lewis P.O. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 2001, 50:913-925.
-
(2001)
Syst. Biol.
, vol.50
, pp. 913-925
-
-
Lewis, P.O.1
-
85
-
-
84937538098
-
Morphology should not be forgotten in the era of genomics - a phylogenetic perspective
-
Published online January 30, 2015
-
Giribet G. Morphology should not be forgotten in the era of genomics - a phylogenetic perspective. Zool. Anz. 2015, Published online January 30, 2015. 10.1016/j.jcz.2015.01.003.
-
(2015)
Zool. Anz.
-
-
Giribet, G.1
|