-
1
-
-
17744398025
-
More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
-
Rokas A., and Carroll S.B. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 22 (2005) 1337-1344
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1337-1344
-
-
Rokas, A.1
Carroll, S.B.2
-
2
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A., et al. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425 (2003) 798-804
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
-
3
-
-
0242268536
-
Evolution: ending incongruence
-
Gee H. Evolution: ending incongruence. Nature 425 (2003) 782
-
(2003)
Nature
, vol.425
, pp. 782
-
-
Gee, H.1
-
4
-
-
0031504952
-
Gene trees in species
-
Maddison W.P. Gene trees in species. Syst. Biol. 46 (1997) 523-536
-
(1997)
Syst. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
5
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27 (1978) 401-410
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
7
-
-
3042550872
-
Genome-scale phylogeny and the detection of systematic biases
-
Phillips M.J., et al. Genome-scale phylogeny and the detection of systematic biases. Mol. Biol. Evol. 21 (2004) 1455-1458
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1455-1458
-
-
Phillips, M.J.1
-
8
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
9
-
-
33645866042
-
-
Swofford, D.L. (2000) PAUP*: Phylogenetic Analysis Using Parsimony and Other Methods, 4b10 edn, Sinauer
-
-
-
-
10
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
11
-
-
13444259388
-
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
-
Jobb G., et al. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 4 (2004) 18
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 18
-
-
Jobb, G.1
-
12
-
-
0035339920
-
Molecular phylogenetics: state-of-the-art methods for looking into the past
-
Whelan S., et al. Molecular phylogenetics: state-of-the-art methods for looking into the past. Trends Genet. 17 (2001) 262-272
-
(2001)
Trends Genet.
, vol.17
, pp. 262-272
-
-
Whelan, S.1
-
14
-
-
7444237566
-
The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?
-
Douzery E.J., et al. The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?. Proc Natl Acad Sci U S A 101 (2004) 15386-15391
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 15386-15391
-
-
Douzery, E.J.1
-
15
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis D.M., and Bull J.J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
-
(1993)
Syst. Biol.
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
16
-
-
3242795999
-
An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data
-
Taylor D.J., and Piel W.H. An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data. Mol. Biol. Evol. 21 (2004) 1534-1537
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1534-1537
-
-
Taylor, D.J.1
Piel, W.H.2
-
17
-
-
0027463557
-
Ribosomal RNA trees misleading?
-
Hasegawa M., and Hashimoto T. Ribosomal RNA trees misleading?. Nature 361 (1993) 23
-
(1993)
Nature
, vol.361
, pp. 23
-
-
Hasegawa, M.1
Hashimoto, T.2
-
18
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart P., et al. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11 (1994) 605-612
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.1
-
19
-
-
0025952777
-
Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts
-
Woese C.R., et al. Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts. Syst. Appl. Microbiol. 14 (1991) 364-371
-
(1991)
Syst. Appl. Microbiol.
, vol.14
, pp. 364-371
-
-
Woese, C.R.1
-
20
-
-
0028176239
-
Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record
-
Philippe H., et al. Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record. J. Evol. Biol. 7 (1994) 247-265
-
(1994)
J. Evol. Biol.
, vol.7
, pp. 247-265
-
-
Philippe, H.1
-
21
-
-
0037291976
-
Taxon sampling, bioinformatics, and phylogenomics
-
Rosenberg M.S., and Kumar S. Taxon sampling, bioinformatics, and phylogenomics. Syst. Biol. 52 (2003) 119-124
-
(2003)
Syst. Biol.
, vol.52
, pp. 119-124
-
-
Rosenberg, M.S.1
Kumar, S.2
-
22
-
-
0028578194
-
Can the cambrian explosion be inferred through molecular phylogeny?
-
Philippe H., et al. Can the cambrian explosion be inferred through molecular phylogeny?. Development 120 (1994) S15-S25
-
(1994)
Development
, vol.120
-
-
Philippe, H.1
-
23
-
-
17744394753
-
Phylogenomics and the reconstruction of the tree of life
-
Delsuc F., et al. Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6 (2005) 361-375
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 361-375
-
-
Delsuc, F.1
-
24
-
-
4644350604
-
Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics
-
Soltis D.E., et al. Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics. Trends Plant Sci. 9 (2004) 477-483
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 477-483
-
-
Soltis, D.E.1
-
25
-
-
10644253746
-
-
Stefanovic, S. et al. (2004) Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol. Biol. DOI:10.1186/1471-2148-4-35 (http://www.biomedcentral.com/1471-2148/4/35)
-
-
-
-
26
-
-
18144425198
-
The place of Amborella within the radiation of angiosperms
-
Lockhart P.J., and Penny D. The place of Amborella within the radiation of angiosperms. Trends Plant Sci. 10 (2005) 201-202
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 201-202
-
-
Lockhart, P.J.1
Penny, D.2
-
27
-
-
33645864539
-
-
Holland, B.R. et al. Improved consensus network techniques for genome-scale phylogeny. Mol. Biol. Evol. (in press)
-
-
-
-
28
-
-
27744524191
-
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
-
Brinkmann H., et al. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst. Biol. 54 (2005) 743-757
-
(2005)
Syst. Biol.
, vol.54
, pp. 743-757
-
-
Brinkmann, H.1
-
29
-
-
0031301965
-
Rodent monophyly: pitfalls of molecular phylogenies
-
Philippe H. Rodent monophyly: pitfalls of molecular phylogenies. J. Mol. Evol. 45 (1997) 712-715
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 712-715
-
-
Philippe, H.1
-
30
-
-
17744386162
-
Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
-
Philippe H., et al. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol. Biol. Evol. 22 (2005) 1246-1253
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
-
31
-
-
24744449757
-
Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone
-
Leebens-Mack J., et al. Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. Mol. Biol. Evol. 22 (2005) 1948-1963
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1948-1963
-
-
Leebens-Mack, J.1
-
32
-
-
19444384196
-
Should phylogenetic models be trying to 'fit an elephant'?
-
Steel M. Should phylogenetic models be trying to 'fit an elephant'?. Trends Genet. 21 (2005) 307-309
-
(2005)
Trends Genet.
, vol.21
, pp. 307-309
-
-
Steel, M.1
-
33
-
-
0034702256
-
Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions
-
Philippe H., et al. Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions. Proc R Soc London B 267 (2000) 1213-1221
-
(2000)
Proc R Soc London B
, vol.267
, pp. 1213-1221
-
-
Philippe, H.1
-
34
-
-
0037329108
-
Comparison of bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
-
Douady C.J., et al. Comparison of bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 20 (2003) 248-254
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 248-254
-
-
Douady, C.J.1
-
35
-
-
0027494836
-
MUST, a computer package of management utilities for sequences and trees
-
Philippe H. MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res. 21 (1993) 5264-5272
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5264-5272
-
-
Philippe, H.1
|