메뉴 건너뛰기




Volumn 32, Issue 2, 2016, Pages 113-140

The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; DATA SET; FROG; GENETIC ANALYSIS; GENOMICS; MAXIMUM LIKELIHOOD ANALYSIS; PHYLOGENETICS; PHYLOGENY; TAXONOMY;

EID: 84959509125     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/cla.12118     Document Type: Article
Times cited : (116)

References (92)
  • 2
    • 11044238670 scopus 로고    scopus 로고
    • Recurrent ecological adaptations revealed through a molecular analysis of the secretive cophyline frogs of Madagascar
    • Andreone, F., Vences, M., Vieites, D.R., Glaw, F., Meyer, A., 2005. Recurrent ecological adaptations revealed through a molecular analysis of the secretive cophyline frogs of Madagascar. Mol. Phylogenet. Evol. 34, 315-322.
    • (2005) Mol. Phylogenet. Evol. , vol.34 , pp. 315-322
    • Andreone, F.1    Vences, M.2    Vieites, D.R.3    Glaw, F.4    Meyer, A.5
  • 8
    • 0034612237 scopus 로고    scopus 로고
    • Convergent adaptive radiations in Madagascan and Asian ranid frogs reveal covariation between larval and adult traits
    • Bossuyt, F., Milinkovitch, M.C., 2000. Convergent adaptive radiations in Madagascan and Asian ranid frogs reveal covariation between larval and adult traits. PNAS 97, 6585-6590.
    • (2000) PNAS , vol.97 , pp. 6585-6590
    • Bossuyt, F.1    Milinkovitch, M.C.2
  • 10
    • 0012091764 scopus 로고
    • Science, philosophy, and systematics
    • Cracraft, J.L., 1978. Science, philosophy, and systematics. Syst. Zool. 27, 213-216.
    • (1978) Syst. Zool. , vol.27 , pp. 213-216
    • Cracraft, J.L.1
  • 11
    • 0141724871 scopus 로고    scopus 로고
    • Huge populations and old species of Costa Rican and Panamanian dirt frogs inferred from mitochondrial and nuclear gene sequences
    • Crawford, A.J., 2003. Huge populations and old species of Costa Rican and Panamanian dirt frogs inferred from mitochondrial and nuclear gene sequences. Mol. Ecol. 12, 2525-2540.
    • (2003) Mol. Ecol. , vol.12 , pp. 2525-2540
    • Crawford, A.J.1
  • 12
    • 84898755720 scopus 로고    scopus 로고
    • Red hot chili pepper. A new Calluella Stoliczka, 1872 (Lissamphibia: Anura: Microhylidae) from Sarawak, East Malaysia (Borneo)
    • Das, I., Min, P.Y., Hsu, W.W., Hertwig, S.T., Haas, A., 2014. Red hot chili pepper. A new Calluella Stoliczka, 1872 (Lissamphibia: Anura: Microhylidae) from Sarawak, East Malaysia (Borneo). Zootaxa 3785, 550-560.
    • (2014) Zootaxa , vol.3785 , pp. 550-560
    • Das, I.1    Min, P.Y.2    Hsu, W.W.3    Hertwig, S.T.4    Haas, A.5
  • 14
    • 85027946399 scopus 로고    scopus 로고
    • Indel information eliminates trivial sequence alignment in maximum likelihood phylogenetic analysis
    • Denton, J.S.S., Wheeler, W.C., 2012. Indel information eliminates trivial sequence alignment in maximum likelihood phylogenetic analysis. Cladistics 28, 514-528.
    • (2012) Cladistics , vol.28 , pp. 514-528
    • Denton, J.S.S.1    Wheeler, W.C.2
  • 15
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C., 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 18
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: inference and reliability
    • Felsenstein, J., 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22, 521-565.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 19
    • 84959467899 scopus 로고    scopus 로고
    • Amphibian Species of the World: an online reference Version 6.0 (17 January 2013).
    • Frost, D.R., 2015. Amphibian Species of the World: an online reference Version 6.0 (17 January 2013). Available at http://research.amnh.org/vz/herpetology/amphibia/.
    • (2015)
    • Frost, D.R.1
  • 20
    • 0002933480 scopus 로고    scopus 로고
    • Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania (Squamata: Iguanidae)
    • Frost, D.R., Etheridge, R., Janies, D., Titus, T.A., 2001. Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania (Squamata: Iguanidae). Am. Mus. Novit. 3343, 1-38.
    • (2001) Am. Mus. Novit. , vol.3343 , pp. 1-38
    • Frost, D.R.1    Etheridge, R.2    Janies, D.3    Titus, T.A.4
  • 25
    • 84930608330 scopus 로고    scopus 로고
    • Beautiful bright belly: A distinctive new microhylid frog (Amphibia: Stumpffia) from eastern Madagascar
    • Glaw, F., Vallan, D., Andreone, F., Edmonds, D., Dolch, R., Vences, M., 2015. Beautiful bright belly: A distinctive new microhylid frog (Amphibia: Stumpffia) from eastern Madagascar. Zootaxa 3925, 120-128.
    • (2015) Zootaxa , vol.3925 , pp. 120-128
    • Glaw, F.1    Vallan, D.2    Andreone, F.3    Edmonds, D.4    Dolch, R.5    Vences, M.6
  • 26
    • 0033499153 scopus 로고    scopus 로고
    • Analysing large datasets in reasonable times: solutions for composite optima
    • Goloboff, P.A., 1999. Analysing large datasets in reasonable times: solutions for composite optima. Cladistics 15, 415-428.
    • (1999) Cladistics , vol.15 , pp. 415-428
    • Goloboff, P.A.1
  • 27
    • 45749124657 scopus 로고    scopus 로고
    • TNT, a free program for phylogenetic analysis
    • Goloboff, P.A., Farris, J.S., Nixon, K.C., 2008. TNT, a free program for phylogenetic analysis. Cladistics 24, 774-786.
    • (2008) Cladistics , vol.24 , pp. 774-786
    • Goloboff, P.A.1    Farris, J.S.2    Nixon, K.C.3
  • 28
    • 0036213549 scopus 로고    scopus 로고
    • Testing methods: the evaluation of discovery operations in evolutionary biology
    • Grant, T., 2002. Testing methods: the evaluation of discovery operations in evolutionary biology. Cladistics 18, 94-111.
    • (2002) Cladistics , vol.18 , pp. 94-111
    • Grant, T.1
  • 29
    • 0038287878 scopus 로고    scopus 로고
    • Data exploration in phylogenetic inference: scientific, heuristic, or neither
    • Grant, T., Kluge, A.G., 2003. Data exploration in phylogenetic inference: scientific, heuristic, or neither. Cladistics 19, 379-418.
    • (2003) Cladistics , vol.19 , pp. 379-418
    • Grant, T.1    Kluge, A.G.2
  • 30
    • 76849096157 scopus 로고    scopus 로고
    • Parsimony, explanatory power, and dynamic homology testing
    • Grant, T., Kluge, A.G., 2009. Parsimony, explanatory power, and dynamic homology testing. Syst. Biodivers. 7, 357-363.
    • (2009) Syst. Biodivers. , vol.7 , pp. 357-363
    • Grant, T.1    Kluge, A.G.2
  • 31
    • 0028355535 scopus 로고
    • Molecular evidence for the origin of birds
    • Hedges, S.B., 1994. Molecular evidence for the origin of birds. PNAS 91, 2621-2624.
    • (1994) PNAS , vol.91 , pp. 2621-2624
    • Hedges, S.B.1
  • 32
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: a public knowledge-base of divergence times among organisms
    • Hedges, S.B., Dudley, J., Kumar, S., 2006. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 22, 2971-2972.
    • (2006) Bioinformatics , vol.22 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 33
    • 3843065368 scopus 로고    scopus 로고
    • Australian microhylid frogs (Cophixalus and Austrochaperina): phylogeny, taxonomy, calls, distributions and breeding biology
    • Hoskin, C.J., 2004. Australian microhylid frogs (Cophixalus and Austrochaperina): phylogeny, taxonomy, calls, distributions and breeding biology. Aust. J. Zool. 52, 237-269.
    • (2004) Aust. J. Zool. , vol.52 , pp. 237-269
    • Hoskin, C.J.1
  • 34
    • 79951563718 scopus 로고    scopus 로고
    • Biologically inspired phylogenetic models strongly outperform the No Common Mechanism model
    • Huelsenbeck, J.P., Alfaro, M.E., Suchard, M.A., 2011. Biologically inspired phylogenetic models strongly outperform the No Common Mechanism model. Syst. Biol. 60, 225-232.
    • (2011) Syst. Biol. , vol.60 , pp. 225-232
    • Huelsenbeck, J.P.1    Alfaro, M.E.2    Suchard, M.A.3
  • 35
    • 0031395952 scopus 로고    scopus 로고
    • Testability and the refutation and corroboration of cladistic hypotheses
    • Kluge, A.G., 1997. Testability and the refutation and corroboration of cladistic hypotheses. Cladistics 13, 81-96.
    • (1997) Cladistics , vol.13 , pp. 81-96
    • Kluge, A.G.1
  • 36
    • 33745011394 scopus 로고    scopus 로고
    • From conviction to anti-superfluity: old and new justifications of parsimony in phylogenetic inference
    • Kluge, A.G., Grant, T., 2006. From conviction to anti-superfluity: old and new justifications of parsimony in phylogenetic inference. Cladistics 22, 276-288.
    • (2006) Cladistics , vol.22 , pp. 276-288
    • Kluge, A.G.1    Grant, T.2
  • 37
    • 41049099697 scopus 로고    scopus 로고
    • The radiation of microhylid frogs (Amphibia: Anura) on New Guinea: a mitochondrial phylogeny reveals parallel evolution of morphological and life history traits and disproves the current morpology-based classification
    • Köhler, F., Günther, R., 2008. The radiation of microhylid frogs (Amphibia: Anura) on New Guinea: a mitochondrial phylogeny reveals parallel evolution of morphological and life history traits and disproves the current morpology-based classification. Mol. Phylogenet. Evol. 47, 353-365.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 353-365
    • Köhler, F.1    Günther, R.2
  • 38
    • 84884792411 scopus 로고    scopus 로고
    • A new species of Choerophryne (Anura: Microhylidae) from Papua New Guinea, with remarks on the taxonomic status of Albericus
    • Kraus, F., 2013. A new species of Choerophryne (Anura: Microhylidae) from Papua New Guinea, with remarks on the taxonomic status of Albericus. Zoosyst. Evol. 89, 283-291.
    • (2013) Zoosyst. Evol. , vol.89 , pp. 283-291
    • Kraus, F.1
  • 39
    • 79959257950 scopus 로고    scopus 로고
    • From Antarctica or Asia? New colonization scenario for Australian-New Guinean narrow mouth toads suggested from the findings on a mysterious genus Gastrophrynoides
    • Kurabayashi, A., Matsui, M., Belabut, D.M., Yong, H., Ahmad, N., Sudin, A., Kuramoto, M., Hamidy, H., Sumida, M., 2011. From Antarctica or Asia? New colonization scenario for Australian-New Guinean narrow mouth toads suggested from the findings on a mysterious genus Gastrophrynoides. BMC Biol. 11, 175.
    • (2011) BMC Biol. , vol.11 , pp. 175
    • Kurabayashi, A.1    Matsui, M.2    Belabut, D.M.3    Yong, H.4    Ahmad, N.5    Sudin, A.6    Kuramoto, M.7    Hamidy, H.8    Sumida, M.9
  • 40
    • 84861380450 scopus 로고    scopus 로고
    • PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear, R., Calcott, B., Ho, S.Y.W., Guindon, S., 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Biol. Evol. 29, 1695-1701.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.W.3    Guindon, S.4
  • 41
    • 67449163699 scopus 로고    scopus 로고
    • The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    • Lemmon, A.R., Brown, J.M., Stanger-Hall, K., Moriarty-Lemmon, E., 2009. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst. Biol. 58, 130-145.
    • (2009) Syst. Biol. , vol.58 , pp. 130-145
    • Lemmon, A.R.1    Brown, J.M.2    Stanger-Hall, K.3    Moriarty-Lemmon, E.4
  • 42
    • 84865266483 scopus 로고    scopus 로고
    • Anchored hybrid enrichment for massively high-throughput phylogenomics
    • Lemmon, A.R., Emme, S., Lemmon, E.M., 2012. Anchored hybrid enrichment for massively high-throughput phylogenomics. Syst. Biol. 61, 727-744.
    • (2012) Syst. Biol. , vol.61 , pp. 727-744
    • Lemmon, A.R.1    Emme, S.2    Lemmon, E.M.3
  • 44
    • 84859530730 scopus 로고    scopus 로고
    • Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
    • McCormack, J.E., Faircloth, B.C., Crawford, N.G., Gowaty, P.A., Brumfield, R.T., Glenn, T.C., 2012. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis. Genome Res. 22, 746-754.
    • (2012) Genome Res. , vol.22 , pp. 746-754
    • McCormack, J.E.1    Faircloth, B.C.2    Crawford, N.G.3    Gowaty, P.A.4    Brumfield, R.T.5    Glenn, T.C.6
  • 45
    • 0035057511 scopus 로고    scopus 로고
    • Models of sequence evolution for DNA sequences containing gaps
    • McGuire, G., Denham, M.C., Balding, D.J., 2001. Models of sequence evolution for DNA sequences containing gaps. Mol. Biol. Evol. 18, 481-490.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 481-490
    • McGuire, G.1    Denham, M.C.2    Balding, D.J.3
  • 46
    • 34547910623 scopus 로고    scopus 로고
    • Nuclear gene phylogeny of narrow-mouthed toads (Family: Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins
    • van der Meijden, A., Vences, M., Hoegg, S., Boistel, R., Channing, A., Meyer, A., 2007. Nuclear gene phylogeny of narrow-mouthed toads (Family: Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins. Mol. Phylogenet. Evol. 44, 1017-1030.
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 1017-1030
    • van der Meijden, A.1    Vences, M.2    Hoegg, S.3    Boistel, R.4    Channing, A.5    Meyer, A.6
  • 47
    • 77956285690 scopus 로고    scopus 로고
    • Illumina sequencing library preparation for highly multiplexed target capture and sequencing
    • Meyer, M., Kircher, M., 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. 2010, 1-10.
    • (2010) Cold Spring Harb. Protoc. , vol.2010 , pp. 1-10
    • Meyer, M.1    Kircher, M.2
  • 48
    • 84959521443 scopus 로고
    • Description de deux ophidiens et d'un batracien d'especes nouvelles. Le Naturaliste. Série 2. Paris 6: 35.
    • Mocquard, F., 1892. Description de deux ophidiens et d'un batracien d'especes nouvelles. Le Naturaliste. Série 2. Paris 6: 35.
    • (1892)
    • Mocquard, F.1
  • 49
    • 0001879933 scopus 로고
    • Molecular studies of evolution: a source of novel statistical problems
    • In: Gupta, S.S., Yackel, J. (Eds.), Academic Press, New York -.
    • Neyman, J., 1971. Molecular studies of evolution: a source of novel statistical problems. In: Gupta, S.S., Yackel, J. (Eds.), Statistical Decision Theory and Related Topics. Academic Press, New York, pp. 1-27.
    • (1971) Statistical Decision Theory and Related Topics , pp. 1-27
    • Neyman, J.1
  • 50
    • 0033504552 scopus 로고    scopus 로고
    • The Parsimony Ratchet, a new method for rapid parsimony analysis
    • Nixon, K.C., 1999. The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics 15, 407-414.
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 51
    • 84903527313 scopus 로고    scopus 로고
    • Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
    • Padial, J.M., Grant, T., Frost, D.R., 2014. Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria. Zootaxa 3825, 1-132.
    • (2014) Zootaxa , vol.3825 , pp. 1-132
    • Padial, J.M.1    Grant, T.2    Frost, D.R.3
  • 54
    • 84896919549 scopus 로고    scopus 로고
    • Phylogeny, taxonomic revision, and character evolution of the genera Chiasmocleis and Syncope (Anura, Microhylidae) in amazonia, with descriptions of three new species
    • Peloso, P.L.V., Forlani, M.C., Motta, A.P., Gaucher, P., Sturaro, M.J., Wheeler, W.C., 2014. Phylogeny, taxonomic revision, and character evolution of the genera Chiasmocleis and Syncope (Anura, Microhylidae) in amazonia, with descriptions of three new species. Bul. Am. Mus. Nat. Hist. 386, 1-111.
    • (2014) Bul. Am. Mus. Nat. Hist. , vol.386 , pp. 1-111
    • Peloso, P.L.V.1    Forlani, M.C.2    Motta, A.P.3    Gaucher, P.4    Sturaro, M.J.5    Wheeler, W.C.6
  • 57
    • 80052717965 scopus 로고    scopus 로고
    • A large-scale phylogeny of Amphibia including over 2,800 species, and a revised classification of extant frogs, salamanders, and caecilians
    • Pyron, R.A., Wiens, J.J., 2011. A large-scale phylogeny of Amphibia including over 2, 800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol. Phylogenet. Evol. 61, 543-583.
    • (2011) Mol. Phylogenet. Evol. , vol.61 , pp. 543-583
    • Pyron, R.A.1    Wiens, J.J.2
  • 58
    • 84870286578 scopus 로고    scopus 로고
    • Taxonomy and natural history of arboreal microhylid frogs (Platypelis) from the Tsaratanana Massif in northern Madagascar, with description of a new species
    • Rakotoarison, A., Glaw, F., Vieites, D.R., Raminosoa, N.R., Vences, M., 2012. Taxonomy and natural history of arboreal microhylid frogs (Platypelis) from the Tsaratanana Massif in northern Madagascar, with description of a new species. Zootaxa 3563, 1-25.
    • (2012) Zootaxa , vol.3563 , pp. 1-25
    • Rakotoarison, A.1    Glaw, F.2    Vieites, D.R.3    Raminosoa, N.R.4    Vences, M.5
  • 59
    • 84978007842 scopus 로고
    • The cranial morphology of the genera Kaloula Gray and Phrynella Boulenger (Anura)
    • Ramaswami, L.S., 1936. The cranial morphology of the genera Kaloula Gray and Phrynella Boulenger (Anura). Proc. Zool. Soc. London 106, 1137-1155.
    • (1936) Proc. Zool. Soc. London , vol.106 , pp. 1137-1155
    • Ramaswami, L.S.1
  • 60
    • 84855712734 scopus 로고    scopus 로고
    • Ecological guild evolution and the discovery of the world's smallest vertebrate
    • Rittmeyer, E.N., Allison, A., Gründler, M.C., Thompson, D.K., Austin, C.C., 2012. Ecological guild evolution and the discovery of the world's smallest vertebrate. PLoS ONE 7, 1-11.
    • (2012) PLoS ONE , vol.7 , pp. 1-11
    • Rittmeyer, E.N.1    Allison, A.2    Gründler, M.C.3    Thompson, D.K.4    Austin, C.C.5
  • 61
    • 0016424695 scopus 로고
    • Minimal mutation trees of sequences
    • Sankoff, D., 1975. Minimal mutation trees of sequences. SIAM J. Appl. Math. 28, 35-42.
    • (1975) SIAM J. Appl. Math. , vol.28 , pp. 35-42
    • Sankoff, D.1
  • 63
    • 77954501352 scopus 로고    scopus 로고
    • Unringing a bell: metazoan phylogenomics and the partition bootstrap
    • Siddall, M.E., 2010. Unringing a bell: metazoan phylogenomics and the partition bootstrap. Cladistics 26, 444-452.
    • (2010) Cladistics , vol.26 , pp. 444-452
    • Siddall, M.E.1
  • 64
    • 84858080561 scopus 로고    scopus 로고
    • Misleading results of likelihood-based phylogenetic analyses in the presence of missing data
    • Simmons, M.P., 2012a. Misleading results of likelihood-based phylogenetic analyses in the presence of missing data. Cladistics 28, 208-222.
    • (2012) Cladistics , vol.28 , pp. 208-222
    • Simmons, M.P.1
  • 65
    • 83655167077 scopus 로고    scopus 로고
    • Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data
    • Simmons, M.P., 2012b. Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data. Mol. Phylogenet. Evol. 62, 472-484.
    • (2012) Mol. Phylogenet. Evol. , vol.62 , pp. 472-484
    • Simmons, M.P.1
  • 66
    • 84880157756 scopus 로고    scopus 로고
    • An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters
    • Simmons, M.P., Goloboff, P.A., 2013. An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters. Mol. Phylogenet. Evol. 69, 265-275.
    • (2013) Mol. Phylogenet. Evol. , vol.69 , pp. 265-275
    • Simmons, M.P.1    Goloboff, P.A.2
  • 67
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons, M.P., Ochoterena, H., 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 369, 369-381.
    • (2000) Syst. Biol. , vol.369 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 68
    • 0041317258 scopus 로고    scopus 로고
    • More than the sum of their parts: on the evolution of proteins from peptides
    • Soding, J., Lupas, A.N., 2003. More than the sum of their parts: on the evolution of proteins from peptides. BioEssays 25, 837-846.
    • (2003) BioEssays , vol.25 , pp. 837-846
    • Soding, J.1    Lupas, A.N.2
  • 69
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences
    • In: Miura, R.M. (Ed.), American Mathematical Society, Providence -.
    • Tavaré, S., 1986. Some probabilistic and statistical problems in the analysis of DNA sequences. In: Miura, R.M. (Ed.), Some Mathematical Questions in Biology-DNA Sequence Analysis. American Mathematical Society, Providence, pp. 57-86.
    • (1986) Some Mathematical Questions in Biology-DNA Sequence Analysis , pp. 57-86
    • Tavaré, S.1
  • 70
    • 1842717956 scopus 로고    scopus 로고
    • Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes
    • Taylor, M.S., Ponting, C.P., Copley, R.R., 2004. Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes. Genome Res. 14, 555-566.
    • (2004) Genome Res. , vol.14 , pp. 555-566
    • Taylor, M.S.1    Ponting, C.P.2    Copley, R.R.3
  • 71
    • 0031149251 scopus 로고    scopus 로고
    • Links between maximum likelihood and maximum parsimony under a simple model of site substitution
    • Tuffley, C., Steel, M., 1997. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull. Math. Biol. 59, 581-607.
    • (1997) Bull. Math. Biol. , vol.59 , pp. 581-607
    • Tuffley, C.1    Steel, M.2
  • 72
    • 79952406380 scopus 로고    scopus 로고
    • SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
    • Vaidya, G., Lohman, D.J., Meier, R., 2011. SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27, 171-180.
    • (2011) Cladistics , vol.27 , pp. 171-180
    • Vaidya, G.1    Lohman, D.J.2    Meier, R.3
  • 74
    • 73649145874 scopus 로고    scopus 로고
    • POY version 4: phylogenetic analysis using dynamic homologies
    • Varón, A., Vinh, L.S., Wheeler, W.C., 2010. POY version 4: phylogenetic analysis using dynamic homologies. Cladistics 26, 72-85.
    • (2010) Cladistics , vol.26 , pp. 72-85
    • Varón, A.1    Vinh, L.S.2    Wheeler, W.C.3
  • 75
    • 0001857390 scopus 로고    scopus 로고
    • Optimization alignment: the end of multiple sequence alignment in phylogenetics
    • Wheeler, W.C., 1996. Optimization alignment: the end of multiple sequence alignment in phylogenetics. Cladistics 12, 1-9.
    • (1996) Cladistics , vol.12 , pp. 1-9
    • Wheeler, W.C.1
  • 76
    • 0035010492 scopus 로고    scopus 로고
    • Homology and the optimization of DNA sequence data
    • Wheeler, W.C., 2001. Homology and the optimization of DNA sequence data. Cladistics 17, 3-11.
    • (2001) Cladistics , vol.17 , pp. 3-11
    • Wheeler, W.C.1
  • 77
    • 0037987287 scopus 로고    scopus 로고
    • Optimization alignment: down, up, error, and improvements
    • In: DeSalle, R., Giribet, G., Wheeler, W.C. (Eds.), Birkhäuser, Basel -.
    • Wheeler, W.C., 2002. Optimization alignment: down, up, error, and improvements. In: DeSalle, R., Giribet, G., Wheeler, W.C. (Eds.), Techniques in Molecular Systematics and Evolution. Birkhäuser, Basel, pp. 55-69.
    • (2002) Techniques in Molecular Systematics and Evolution , pp. 55-69
    • Wheeler, W.C.1
  • 78
    • 0043211946 scopus 로고    scopus 로고
    • Implied alignment: a synapomorphy-based multiple sequence alignment method
    • Wheeler, W.C., 2003a. Implied alignment: a synapomorphy-based multiple sequence alignment method. Cladistics 19, 261-268.
    • (2003) Cladistics , vol.19 , pp. 261-268
    • Wheeler, W.C.1
  • 79
    • 0042710797 scopus 로고    scopus 로고
    • Iterative pass optimization of sequence data
    • Wheeler, W.C., 2003b. Iterative pass optimization of sequence data. Cladistics 19, 254-260.
    • (2003) Cladistics , vol.19 , pp. 254-260
    • Wheeler, W.C.1
  • 80
    • 33645096941 scopus 로고    scopus 로고
    • Dynamic homology and the likelihood criterion
    • Wheeler, W., 2006. Dynamic homology and the likelihood criterion. Cladistics 22, 157-170.
    • (2006) Cladistics , vol.22 , pp. 157-170
    • Wheeler, W.1
  • 82
    • 84923342140 scopus 로고    scopus 로고
    • POY version 5: Phylogenetic analysis using dynamic homologies under multiple optimality criteria
    • Wheeler, W.C., Lucaroni, N., Hong, L., Crowley, L.M., Varón, A., 2014. POY version 5: Phylogenetic analysis using dynamic homologies under multiple optimality criteria. Cladistics 1-8. doi: 10.1111/cla.12083.
    • (2014) Cladistics , pp. 1-8
    • Wheeler, W.C.1    Lucaroni, N.2    Hong, L.3    Crowley, L.M.4    Varón, A.5
  • 83
    • 80052006478 scopus 로고    scopus 로고
    • Missing data in phylogenetic analysis: reconciling results from simulations and empirical data
    • Wiens, J.J., Morrill, M.C., 2011. Missing data in phylogenetic analysis: reconciling results from simulations and empirical data. Syst. Biol. 60, 1-13.
    • (2011) Syst. Biol. , vol.60 , pp. 1-13
    • Wiens, J.J.1    Morrill, M.C.2
  • 84
    • 28644436536 scopus 로고    scopus 로고
    • Hylid frog phylogeny and sampling strategies for speciose clades
    • Wiens, J.J., Fetzner, J.W., Parkinson, C.L., Reeder, T.W., 2005. Hylid frog phylogeny and sampling strategies for speciose clades. Syst. Biol. 54, 719-748.
    • (2005) Syst. Biol. , vol.54 , pp. 719-748
    • Wiens, J.J.1    Fetzner, J.W.2    Parkinson, C.L.3    Reeder, T.W.4
  • 85
    • 0000533622 scopus 로고
    • New genus and species of Amazonian microhylid frog with a phylogenetic analysis of New World genera
    • Wild, E.R., 1995. New genus and species of Amazonian microhylid frog with a phylogenetic analysis of New World genera. Copeia 1994, 837-984.
    • (1995) Copeia , vol.1994 , pp. 837-984
    • Wild, E.R.1
  • 86
    • 0029498439 scopus 로고
    • Coping with abundant missing entries in phylogenetic inference using parsimony
    • Wilkinson, M., 1995. Coping with abundant missing entries in phylogenetic inference using parsimony. Syst. Biol. 44, 501-514.
    • (1995) Syst. Biol. , vol.44 , pp. 501-514
    • Wilkinson, M.1
  • 87
    • 47749134913 scopus 로고    scopus 로고
    • Patterns of endemism and species richness in Malagasy cophyline frogs support a key role of mountainous areas for speciation
    • Wollenberg, K.C., Vieites, D.R., van der Meijden, A., Glaw, F., Cannatella, D.C., Vences, M., 2008. Patterns of endemism and species richness in Malagasy cophyline frogs support a key role of mountainous areas for speciation. Evolution 62, 1890-1907.
    • (2008) Evolution , vol.62 , pp. 1890-1907
    • Wollenberg, K.C.1    Vieites, D.R.2    van der Meijden, A.3    Glaw, F.4    Cannatella, D.C.5    Vences, M.6
  • 88
    • 77951170797 scopus 로고    scopus 로고
    • Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora)
    • Wolsan, M., Sato, J., 2010. Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora). Cladistics 26, 168-194.
    • (2010) Cladistics , vol.26 , pp. 168-194
    • Wolsan, M.1    Sato, J.2
  • 90
    • 0342492265 scopus 로고
    • A new genus and species of microhylid frog from the Cerro de la Neblina region of Venezuela and a discussion of relationships among New World microhylid genera
    • Zweifel, R.G., 1986. A new genus and species of microhylid frog from the Cerro de la Neblina region of Venezuela and a discussion of relationships among New World microhylid genera. Am. Mus. Novit. 2863, 1-24.
    • (1986) Am. Mus. Novit. , vol.2863 , pp. 1-24
    • Zweifel, R.G.1
  • 91
    • 0039012184 scopus 로고    scopus 로고
    • Partition of the Australopapuan microhylid frog genus Sphenophryne with descriptions of new species
    • Zweifel, R.G., 2000. Partition of the Australopapuan microhylid frog genus Sphenophryne with descriptions of new species. Bul. Am. Mus. Nat. Hist. 253, 1-130.
    • (2000) Bul. Am. Mus. Nat. Hist. , vol.253 , pp. 1-130
    • Zweifel, R.G.1
  • 92
    • 85031863263 scopus 로고    scopus 로고
    • Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD Thesis, The University of Texas at Austin, Austin, TX.
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD Thesis, The University of Texas at Austin, Austin, TX.
    • (2006)
    • Zwickl, D.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.