-
1
-
-
34948847222
-
A new approach to estimate parameters of speciation models with application to apes
-
BECQUET, C., and M. PRZEWORSKI, 2007 A new approach to estimate parameters of speciation models with application to apes. Genome Res. 17: 1505-1519.
-
(2007)
Genome Res
, vol.17
, pp. 1505-1519
-
-
BECQUET, C.1
PRZEWORSKI, M.2
-
2
-
-
0032979748
-
Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach
-
BEERLI, P., and J. FELSENSTEIN, 1999 Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 152: 763-773.
-
(1999)
Genetics
, vol.152
, pp. 763-773
-
-
BEERLI, P.1
FELSENSTEIN, J.2
-
3
-
-
0035836728
-
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
-
BEERLI, P., and J. FELSENSTEIN, 2001 Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA 98: 4563-4568.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4563-4568
-
-
BEERLI, P.1
FELSENSTEIN, J.2
-
4
-
-
35948940895
-
Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
-
BEGUN, D. J., A. K. HOLLOWAY, K. STEVENS, L. W. HILLIER, Y. P. POH et al., 2007 Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol. 5: e310.
-
(2007)
PLoS Biol
, vol.5
-
-
BEGUN, D.J.1
HOLLOWAY, A.K.2
STEVENS, K.3
HILLIER, L.W.4
POH, Y.P.5
-
5
-
-
49749142953
-
Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors
-
BURGESS, R., and Z. YANG, 2008 Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors. Mol. Biol. Evol. 25: 1979-1994.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 1979-1994
-
-
BURGESS, R.1
YANG, Z.2
-
6
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
FELSENSTEIN, J., 1988 Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22: 521-565.
-
(1988)
Annu. Rev. Genet
, vol.22
, pp. 521-565
-
-
FELSENSTEIN, J.1
-
7
-
-
33244495782
-
Accuracy of coalescent likelihood estimates: Do we need more sites, more sequences, or more loci?
-
FELSENSTEIN, J., 2006 Accuracy of coalescent likelihood estimates: Do we need more sites, more sequences, or more loci? Mol. Biol. Evol. 23: 691-700.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 691-700
-
-
FELSENSTEIN, J.1
-
8
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
FU, Y. X., and W. H. LI, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
FU, Y.X.1
LI, W.H.2
-
9
-
-
0030498194
-
Ancestral inference from samples of DNA sequences with recombination
-
GRIFFITHS, R. C., and P. MARJORAM, 1996 Ancestral inference from samples of DNA sequences with recombination. J. Comput. Biol. 3: 479-502.
-
(1996)
J. Comput. Biol
, vol.3
, pp. 479-502
-
-
GRIFFITHS, R.C.1
MARJORAM, P.2
-
10
-
-
0027178798
-
Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex
-
HEY, J., and R.M. KLIMAN, 1993 Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. Mol. Biol. Evol. 10: 804-822.
-
(1993)
Mol. Biol. Evol
, vol.10
, pp. 804-822
-
-
HEY, J.1
KLIMAN, R.M.2
-
11
-
-
3142714474
-
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
-
HEY, J., and R. NIELSEN, 2004 Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
-
(2004)
Genetics
, vol.167
, pp. 747-760
-
-
HEY, J.1
NIELSEN, R.2
-
12
-
-
33847253975
-
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
-
HEY, J., and R. NIELSEN, 2007 Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc. Natl. Acad. Sci. USA 104: 2785-2790.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2785-2790
-
-
HEY, J.1
NIELSEN, R.2
-
13
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
HUDSON, R. R., M. KREITMAN and M. AGUADE, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
HUDSON, R.R.1
KREITMAN, M.2
AGUADE, M.3
-
14
-
-
35048822011
-
Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data
-
HUTTER, S., H. LI, S. BEISSWANGER, D.DE LORENZO and W. STEPHAN, 2007 Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics 177: 469-480.
-
(2007)
Genetics
, vol.177
, pp. 469-480
-
-
HUTTER, S.1
LI, H.2
BEISSWANGER, S.3
DE LORENZO, D.4
STEPHAN, W.5
-
15
-
-
33646555436
-
The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population
-
INNAN, H., and H. WATANABE, 2006 The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population. Mol. Biol. Evol. 23: 1040-1047.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 1040-1047
-
-
INNAN, H.1
WATANABE, H.2
-
17
-
-
0014494672
-
The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
-
KIMURA, M., 1969 The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics 61: 893-903.
-
(1969)
Genetics
, vol.61
, pp. 893-903
-
-
KIMURA, M.1
-
18
-
-
0029027992
-
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
-
KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 1995 Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140: 1421-1430.
-
(1995)
Genetics
, vol.140
, pp. 1421-1430
-
-
KUHNER, M.K.1
YAMATO, J.2
FELSENSTEIN, J.3
-
19
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
LI,W. H., C. I. WU and C. C. LUO, 1985 A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2: 150-174.
-
(1985)
Mol. Biol. Evol
, vol.2
, pp. 150-174
-
-
LI, W.H.1
WU, C.I.2
LUO, C.C.3
-
20
-
-
0033178244
-
application of the maximum likelihood method
-
1999 Paleo-demography of the Drosophila melanogaster subgroup
-
LI, Y. J., Y. SATTA and N. TAKAHATA, 1999 Paleo-demography of the Drosophila melanogaster subgroup: application of the maximum likelihood method. Genes Genet. Syst. 74: 117-127.
-
Genes Genet. Syst
, vol.74
, pp. 117-127
-
-
LI, Y.J.1
SATTA, Y.2
TAKAHATA, N.3
-
21
-
-
0030034357
-
Intraspecific nuclear DNA variation in Drosophila
-
MORIYAMA, E. N., and J. R. POWELL, 1996 Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13: 261-277.
-
(1996)
Mol. Biol. Evol
, vol.13
, pp. 261-277
-
-
MORIYAMA, E.N.1
POWELL, J.R.2
-
22
-
-
0034967295
-
Distinguishing migration from isolation: A Markov chain Monte Carlo approach
-
NIELSEN, R., and J. WAKELEY, 2001 Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896.
-
(2001)
Genetics
, vol.158
, pp. 885-896
-
-
NIELSEN, R.1
WAKELEY, J.2
-
23
-
-
0029861446
-
Optimal sequencing strategies for surveying molecular genetic diversity
-
PLUZHNIKOV, A., and P. DONNELLY, 1996 Optimal sequencing strategies for surveying molecular genetic diversity. Genetics 144: 1247-1262.
-
(1996)
Genetics
, vol.144
, pp. 1247-1262
-
-
PLUZHNIKOV, A.1
DONNELLY, P.2
-
25
-
-
0004161838
-
-
Cambridge University Press, Cambridge, UK
-
PRESS, W. H., S. A. TEUKOLSKY,W. T. VETTERLING and B. P. FLANNERY, 1992 Numerical Recipes in C - The Art of Scientific Computing. Cambridge University Press, Cambridge, UK.
-
(1992)
Numerical Recipes in C - The Art of Scientific Computing
-
-
PRESS, W.H.1
TEUKOLSKY, S.A.2
VETTERLING, W.T.3
FLANNERY, B.P.4
-
26
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
THORNTON, K., and P. ANDOLFATTO, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
THORNTON, K.1
ANDOLFATTO, P.2
-
27
-
-
0031669749
-
Genealogical inference from microsatellite data
-
WILSON, I. J., and D. J. BALDING, 1998 Genealogical inference from microsatellite data. Genetics 150: 499-510.
-
(1998)
Genetics
, vol.150
, pp. 499-510
-
-
WILSON, I.J.1
BALDING, D.J.2
-
28
-
-
0001771498
-
Evolution in Mendelian populations
-
WRIGHT, S., 1931 Evolution in Mendelian populations. Genetics 16: 97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
WRIGHT, S.1
-
29
-
-
0030741747
-
On the estimation of ancestral population sizes of modern humans
-
YANG, Z., 1997 On the estimation of ancestral population sizes of modern humans. Genet. Res. 69: 111-116.
-
(1997)
Genet. Res
, vol.69
, pp. 111-116
-
-
YANG, Z.1
-
30
-
-
0036961518
-
Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci
-
YANG, Z., 2002 Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci. Genetics 162: 1811-1823.
-
(2002)
Genetics
, vol.162
, pp. 1811-1823
-
-
YANG, Z.1
|