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Volumn 106, Issue 22, 2009, Pages 8986-8991

Evidence for an ancient adaptive episode of convergent molecular evolution

Author keywords

Adaptation; Convergence; Phylogenetics; Reptile

Indexed keywords

AMINO ACID; MITOCHONDRIAL PROTEIN;

EID: 67049119180     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0900233106     Document Type: Article
Times cited : (252)

References (30)
  • 2
    • 27744524191 scopus 로고    scopus 로고
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
    • DOI 10.1080/10635150500234609
    • Brinkmann H, van der Giezen M, Zhou Y, Poncelin de Raucourt G, Philippe H (2005) An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol 54:743-757. (Pubitemid 43142294)
    • (2005) Systematic Biology , vol.54 , Issue.5 , pp. 743-757
    • Brinkmann, H.1    Van Der Giezen, M.2    Zhou, Y.3    De Raucourt, G.P.4    Philippe, H.5
  • 3
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • DOI 10.1186/1471-2148-7-S1-S4
    • Lartillot N, Brinkmann H, Philippe H (2007) Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol 7(Suppl 1):S4. (Pubitemid 351826841)
    • (2007) BMC Evolutionary Biology , vol.7 , Issue.SUPPL. 1
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 4
    • 14944363833 scopus 로고    scopus 로고
    • Convergence and the multidimensional niche
    • Harmon LJ, Kolbe JJ, Cheverud JM, Losos JB (2005) Convergence and the multidimensional niche. Evolution 59:409-421. (Pubitemid 40359091)
    • (2005) Evolution , vol.59 , Issue.2 , pp. 409-421
    • Harmon, L.J.1    Kolbe, J.J.2    Cheverud, J.M.3    Losos, J.B.4
  • 5
    • 0032409045 scopus 로고    scopus 로고
    • Convergent evolution and character correlation in burrowing reptiles: Towards a resolution of squamate relationships
    • DOI 10.1006/bijl.1998.0256
    • Lee MSY (1998) Convergent evolution and character correlation in burrowing reptiles: Towards a resolution of squamate relationships. Biol J Linn Soc 65:369-453. (Pubitemid 29032382)
    • (1998) Biological Journal of the Linnean Society , vol.65 , Issue.4 , pp. 369-453
    • Lee, M.S.Y.1
  • 6
    • 0041568326 scopus 로고    scopus 로고
    • When are phylogenetic analyses misled by convergence? a case study in Texas cave salamanders
    • DOI 10.1080/10635150309320
    • Wiens JJ, Chippindale PT, Hillis DM (2003) When are phylogenetic analyses misled by convergence? A case study in texas cave salamanders. Syst Biol 52:501-514. (Pubitemid 36990378)
    • (2003) Systematic Biology , vol.52 , Issue.4 , pp. 501-514
    • Wiens, J.J.1    Chippindale, P.T.2    Hillis, D.M.3
  • 7
    • 48249140650 scopus 로고    scopus 로고
    • Adaptive evolution and functional redesign of core metabolic proteins in snakes
    • Castoe TA, Jiang ZJ, Gu W, Wang ZO, Pollock DD (2008) Adaptive evolution and functional redesign of core metabolic proteins in snakes. PLoS ONE 3:e2201.
    • (2008) PLoS ONE , vol.3
    • Castoe, T.A.1    Jiang, Z.J.2    Gu, W.3    Wang, Z.O.4    Pollock, D.D.5
  • 8
    • 44649109665 scopus 로고    scopus 로고
    • Toxin-resistant sodium channels: Parallel adaptive evolution across a complete gene family
    • Jost MC, et al. (2008) Toxin-resistant sodium channels: Parallel adaptive evolution across a complete gene family. Mol Biol Evol 25:1016-1024.
    • (2008) Mol Biol Evol , vol.25 , pp. 1016-1024
    • Jost, M.C.1
  • 10
    • 0028046864 scopus 로고
    • Molecular adaptation of a leaf-eating bird: Stomach lysozyme of the hoatzin
    • Kornegay JR, Schilling JW, Wilson AC (1994) Molecular adaptation of a leaf-eating bird: Stomach lysozyme of the hoatzin. Mol Biol Evol 11:921-928. (Pubitemid 24349473)
    • (1994) Molecular Biology and Evolution , vol.11 , Issue.6 , pp. 921-928
    • Kornegay, J.R.1    Schilling, J.W.2    Wilson, A.C.3
  • 11
    • 0023666025 scopus 로고
    • Adaptive evolution in the stomach lysozymes of foregut fermenters
    • Stewart CB, Schilling JW, Wilson AC (1987) Adaptive evolution in the stomach lysozymes of foregut fermenters. Nature 330:401-404.
    • (1987) Nature , vol.330 , pp. 401-404
    • Stewart, C.B.1    Schilling, J.W.2    Wilson, A.C.3
  • 12
    • 0030957216 scopus 로고    scopus 로고
    • Detection of convergent and parallel evolution at the amino acid sequence level
    • Zhang J, Kumar S (1997) Detection of convergent and parallel evolution at the amino acid sequence level. Mol Biol Evol 14:527-536. (Pubitemid 27200483)
    • (1997) Molecular Biology and Evolution , vol.14 , Issue.5 , pp. 527-536
    • Zhang, J.1    Kumar, S.2
  • 14
    • 49749137335 scopus 로고    scopus 로고
    • Frequent and widespread parallel evolution of protein sequences
    • Rokas A, Carroll SB (2008) Frequent and widespread parallel evolution of protein sequences. Mol Biol Evol 25:1943-1953.
    • (2008) Mol Biol Evol , vol.25 , pp. 1943-1953
    • Rokas, A.1    Carroll, S.B.2
  • 16
    • 0002069577 scopus 로고
    • A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata)
    • Frost DR, Etheridge R (1989) A phylogenetic analysis and taxonomy of iguanian lizards (Reptilia: Squamata). Misc Publ Mus Nat Hist, Univ Kansas 81:1-65.
    • (1989) Misc Publ Mus Nat Hist, Univ Kansas , vol.81 , pp. 1-65
    • Frost, D.R.1    Etheridge, R.2
  • 18
    • 9644269182 scopus 로고    scopus 로고
    • Molecular phylogenetics of Squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree
    • DOI 10.1080/10635150490522340
    • Townsend TM, Larson A, Louis E, Macey JR (2004) Molecular phylogenetics of squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree. Syst Biol 53:735-757. (Pubitemid 39568276)
    • (2004) Systematic Biology , vol.53 , Issue.5 , pp. 735-757
    • Townsend, T.M.1    Larson, A.2    Louis, E.3    Macey, J.R.4
  • 19
    • 28044466648 scopus 로고    scopus 로고
    • The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes
    • DOI 10.1016/j.crvi.2005.10.001, PII S1631069105001794
    • Vidal N, Hedges SB (2005) The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes. Comptes Rendus Biologies 328:1000-1008. (Pubitemid 41683492)
    • (2005) Comptes Rendus - Biologies , vol.328 , Issue.10-11 , pp. 1000-1008
    • Vidal, N.1    Hedges, S.B.2
  • 20
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116. (Pubitemid 29368141)
    • (1999) Molecular Biology and Evolution , vol.16 , Issue.8 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 22
    • 4944223649 scopus 로고    scopus 로고
    • Ancestral sequence reconstruction in primate mitochondrial DNA: Compositional bias and effect on functional inference
    • DOI 10.1093/molbev/msh198
    • Krishnan NM, Seligmann H, Stewart CB, de Koning APJ, Pollock DD (2004) Ancestral sequence reconstruction in primate mitochondrial DNA: Compositional bias and effect on functional inference. Mol Biol Evol 21:1871-1883. (Pubitemid 39331634)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.10 , pp. 1871-1883
    • Krishnan, N.M.1    Seligmann, H.2    Stewart, C.-B.3    De Koning, A.P.J.4    Pollock, D.D.5
  • 24
    • 0001050687 scopus 로고    scopus 로고
    • eds Balding D, Bishop M, Cannings C (Wiley, New York), 2nd ed
    • Yang Z (2003) in Handbook of Statistical Genetics, eds Balding D, Bishop M, Cannings C (Wiley, New York), 2nd ed, pp 229-254.
    • (2003) Handbook of Statistical Genetics , pp. 229-254
    • Yang, Z.1
  • 25
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate - a practical and powerful approach to multiple testing. J R Stat Soc B Met 57:289-300.
    • (1995) J R Stat Soc B Met , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 26
    • 0023479419 scopus 로고
    • Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters
    • Stewart CB, Wilson AC (1987) Sequence convergence and functional adaptation of stomach lysozymes from foregut fermenters. Cold Spring Harb Symp Quant Biol 52:891-899. (Pubitemid 18262398)
    • (1987) Cold Spring Harbor Symposia on Quantitative Biology , vol.52 , pp. 891-899
    • Stewart, C.-B.1    Wilson, A.C.2
  • 27
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The clustal-x windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist F, Huelsenbeck JP (2003) Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 30
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang ZH (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13:555-556. (Pubitemid 27480216)
    • (1997) Computer Applications in the Biosciences , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.