-
1
-
-
63049136852
-
On the submicroscopic structure of chromosomes
-
Gall JG. 1956. On the submicroscopic structure of chromosomes. Brookhaven Symp. Biol. 8:17-32
-
(1956)
Brookhaven Symp. Biol.
, vol.8
, pp. 17-32
-
-
Gall, J.G.1
-
2
-
-
0022857615
-
Structure and function of nuclear and cytoplasmic ribonucleoprotein particles
-
Dreyfuss G. 1986. Structure and function of nuclear and cytoplasmic ribonucleoprotein particles. Annu. Rev. Cell Biol. 2:459-98
-
(1986)
Annu. Rev. Cell Biol.
, vol.2
, pp. 459-498
-
-
Dreyfuss, G.1
-
3
-
-
0016853229
-
Comparison of proteins bound to heterogeneous nuclear RNA and messenger RNA in HeLa cells
-
Kumar A, Pederson T. 1975. Comparison of proteins bound to heterogeneous nuclear RNA and messenger RNA in HeLa cells. J. Mol. Biol. 96:353-65
-
(1975)
J. Mol. Biol.
, vol.96
, pp. 353-365
-
-
Kumar, A.1
Pederson, T.2
-
4
-
-
0017744030
-
Identification and characterization of the packaging proteins of core 40S hnRNP particles
-
Beyer AL, Christensen ME, Walker BW, LeStourgeon WM. 1977. Identification and characterization of the packaging proteins of core 40S hnRNP particles. Cell 11:127-38
-
(1977)
Cell
, vol.11
, pp. 127-138
-
-
Beyer, A.L.1
Christensen, M.E.2
Walker, B.W.3
Lestourgeon, W.M.4
-
6
-
-
0015505603
-
Protein tightly bound to globin mRNA
-
Blobel G. 1972. Protein tightly bound to globin mRNA. Biochem. Biophys. Res. Commun. 47:88-95
-
(1972)
Biochem. Biophys. Res. Commun.
, vol.47
, pp. 88-95
-
-
Blobel, G.1
-
7
-
-
0015834883
-
Two proteins are bound to most species of polysomal mRNA
-
Bryan RN, Hayashi M. 1973. Two proteins are bound to most species of polysomal mRNA. Nat. New Biol. 244:271-74
-
(1973)
Nat. New Biol.
, vol.244
, pp. 271-274
-
-
Bryan, R.N.1
Hayashi, M.2
-
8
-
-
0028873050
-
The major protein of messenger ribonucleoprotein particles in somatic cells is a member of the Y-box binding transcription factor family
-
Evdokimova VM, Wei CL, Sitikov AS, Simonenko PN, Lazarev OA, et al. 1995. The major protein of messenger ribonucleoprotein particles in somatic cells is a member of the Y-box binding transcription factor family. J. Biol. Chem. 270:3186-92
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 3186-3192
-
-
Evdokimova, V.M.1
Wei, C.L.2
Sitikov, A.S.3
Simonenko, P.N.4
Lazarev, O.A.5
-
9
-
-
6944244018
-
Structural organization of mRNA complexes with major core mRNP protein YB-1
-
Skabkin MA, Kiselyova OI, Chernov KG, Sorokin AV, Dubrovin EV, et al. 2004. Structural organization of mRNA complexes with major core mRNP protein YB-1. Nucleic Acids Res. 32:5621-35
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5621-5635
-
-
Skabkin, M.A.1
Kiselyova, O.I.2
Chernov, K.G.3
Sorokin, A.V.4
Dubrovin, E.V.5
-
10
-
-
0019086007
-
Cross-linking ofmRNAto proteins by irradiation of intact cells with ultraviolet light
-
Wagenmakers AJ, Reinders RJ, van Venrooij WJ. 1980. Cross-linking ofmRNAto proteins by irradiation of intact cells with ultraviolet light. Eur. J. Biochem. 112:323-30
-
(1980)
Eur. J. Biochem.
, vol.112
, pp. 323-330
-
-
Wagenmakers, A.J.1
Reinders, R.J.2
Van Venrooij, W.J.3
-
11
-
-
0021219155
-
Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies
-
Dreyfuss G, Choi YD, Adam SA. 1984. Characterization of heterogeneous nuclear RNA-protein complexes in vivo with monoclonal antibodies. Mol. Cell. Biol. 4:1104-14
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 1104-1114
-
-
Dreyfuss, G.1
Choi, Y.D.2
Adam, S.A.3
-
12
-
-
0019513774
-
Structure of nuclear ribonucleoprotein: Identification of proteins in contact with poly(A)+ heterogeneous nuclear RNA in living HeLa cells
-
Mayrand S, Setyono B, Greenberg JR, Pederson T. 1981. Structure of nuclear ribonucleoprotein: identification of proteins in contact with poly(A)+ heterogeneous nuclear RNA in living HeLa cells. J. Cell Biol. 90:380-84
-
(1981)
J. Cell Biol.
, vol.90
, pp. 380-384
-
-
Mayrand, S.1
Setyono, B.2
Greenberg, J.R.3
Pederson, T.4
-
13
-
-
0019464091
-
Specificity in the interaction of hnRNA andmRNA with proteins as revealed by in vivo cross linking
-
van Eekelen CA, Riemen T, van Venrooij WJ. 1981. Specificity in the interaction of hnRNA andmRNA with proteins as revealed by in vivo cross linking. FEBS Lett. 130:223-26
-
(1981)
FEBS Lett
, vol.130
, pp. 223-226
-
-
Van Eekelen, C.A.1
Riemen, T.2
Van Venrooij, W.J.3
-
14
-
-
0023955859
-
Immunopurification of heterogeneous nuclear ribonucleoprotein particles reveals an assortment of RNA-binding proteins
-
Pinol-Roma S, Choi YD, Matunis MJ, Dreyfuss G. 1988. Immunopurification of heterogeneous nuclear ribonucleoprotein particles reveals an assortment of RNA-binding proteins. Genes Dev. 2:215-27
-
(1988)
Genes Dev.
, vol.2
, pp. 215-227
-
-
Pinol-Roma, S.1
Choi, Y.D.2
Matunis, M.J.3
Dreyfuss, G.4
-
15
-
-
0025689134
-
A monoclonal antibody that recognizes a phosphorylated epitope stains lampbrush chromosome loops and small granules in the amphibian germinal vesicle
-
Roth MB, Murphy C, Gall JG. 1990. A monoclonal antibody that recognizes a phosphorylated epitope stains lampbrush chromosome loops and small granules in the amphibian germinal vesicle. J. Cell Biol. 111:2217-23
-
(1990)
J. Cell Biol.
, vol.111
, pp. 2217-2223
-
-
Roth, M.B.1
Murphy, C.2
Gall, J.G.3
-
16
-
-
0025931225
-
A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription
-
Roth MB, Zahler AM, Stolk JA. 1991. A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription. J. Cell Biol. 115:587-96
-
(1991)
J. Cell Biol.
, vol.115
, pp. 587-596
-
-
Roth, M.B.1
Zahler, A.M.2
Stolk, J.A.3
-
17
-
-
0026716104
-
SR proteins: A conserved family of pre-mRNA splicing factors
-
Zahler AM, Lane WS, Stolk JA, Roth MB. 1992. SR proteins: a conserved family of pre-mRNA splicing factors. Genes Dev. 6:837-47
-
(1992)
Genes Dev.
, vol.6
, pp. 837-847
-
-
Zahler, A.M.1
Lane, W.S.2
Stolk, J.A.3
Roth, M.B.4
-
18
-
-
58249093940
-
The SR protein family of splicing factors: Master regulators of gene expression
-
Long JC, Caceres JF. 2009. The SR protein family of splicing factors: master regulators of gene expression. Biochem. J. 417:15-27
-
(2009)
Biochem. J.
, vol.417
, pp. 15-27
-
-
Long, J.C.1
Caceres, J.F.2
-
19
-
-
67649671966
-
SR proteins in vertical integration of gene expression from transcription to RNA processing to translation
-
Zhong XY, Wang P, Han J, Rosenfeld MG, Fu XD. 2009. SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Mol. Cell 35:1-10
-
(2009)
Mol. Cell
, vol.35
, pp. 1-10
-
-
Zhong, X.Y.1
Wang, P.2
Han, J.3
Rosenfeld, M.G.4
Fu, X.D.5
-
21
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, et al. 2011. Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol. 7:548
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
-
22
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. 2011. Global quantification of mammalian gene expression control. Nature 473:337-42
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
-
23
-
-
0018143765
-
A polypeptide in eukaryotic initiation factors that crosslinks specifically to the 5′-terminal cap in mRNA
-
Sonenberg N, Morgan MA, Merrick WC, Shatkin AJ. 1978. A polypeptide in eukaryotic initiation factors that crosslinks specifically to the 5′-terminal cap in mRNA. PNAS 75:4843-47
-
(1978)
PNAS
, vol.75
, pp. 4843-4847
-
-
Sonenberg, N.1
Morgan, M.A.2
Merrick, W.C.3
Shatkin, A.J.4
-
24
-
-
0018516382
-
Eukaryotic mRNA cap binding protein: Purification by affinity chromatography on sepharose-coupled m7GDP
-
Sonenberg N, Rupprecht KM, Hecht SM, Shatkin AJ. 1979. Eukaryotic mRNA cap binding protein: purification by affinity chromatography on sepharose-coupled m7GDP. PNAS 76:4345-49
-
(1979)
PNAS
, vol.76
, pp. 4345-4349
-
-
Sonenberg, N.1
Rupprecht, K.M.2
Hecht, S.M.3
Shatkin, A.J.4
-
25
-
-
0021100046
-
CAP binding proteins associated with the nucleus
-
Patzelt E, Blaas D, Kuechler E. 1983. CAP binding proteins associated with the nucleus. Nucleic Acids Res. 11:5821-35
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 5821-5835
-
-
Patzelt, E.1
Blaas, D.2
Kuechler, E.3
-
26
-
-
0023219953
-
Identification of nuclear cap specific proteins in HeLa cells
-
Rozen F, Sonenberg N. 1987. Identification of nuclear cap specific proteins in HeLa cells. Nucleic Acids Res. 15:6489-500
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 6489-6500
-
-
Rozen, F.1
Sonenberg, N.2
-
27
-
-
0033592896
-
Splicing is required for rapid and efficient mRNA export in metazoans
-
Luo MJ, Reed R. 1999. Splicing is required for rapid and efficient mRNA export in metazoans. PNAS 96:14937-42
-
(1999)
PNAS
, vol.96
, pp. 14937-14942
-
-
Luo, M.J.1
Reed, R.2
-
28
-
-
0032104190
-
A rule for termination-codon position within intron-containing genes: When nonsense affects RNA abundance
-
Nagy E, Maquat LE. 1998. A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance. Trends Biochem. Sci. 23:198-99
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 198-199
-
-
Nagy, E.1
Maquat, L.E.2
-
29
-
-
0029908912
-
A splicing-dependent regulatory mechanism that detects translation signals
-
Carter MS, Li S, Wilkinson MF. 1996. A splicing-dependent regulatory mechanism that detects translation signals. EMBO J. 15:5965-75
-
(1996)
EMBO J.
, vol.15
, pp. 5965-5975
-
-
Carter, M.S.1
Li, S.2
Wilkinson, M.F.3
-
30
-
-
0031840487
-
At least one intron is required for the nonsensemediated decay of triosephosphate isomerase mRNA: A possible link between nuclear splicing and cytoplasmic translation
-
Zhang J, Sun X, Qian Y, LaDuca JP, Maquat LE. 1998. At least one intron is required for the nonsensemediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation. Mol. Cell. Biol. 18:5272-83
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 5272-5283
-
-
Zhang, J.1
Sun, X.2
Qian, Y.3
Laduca, J.P.4
Maquat, L.E.5
-
31
-
-
0033634824
-
Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm
-
Kataoka N, Yong J, Kim VN, Velazquez F, Perkinson RA, et al. 2000. Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm. Mol. Cell 6:673-82
-
(2000)
Mol. Cell
, vol.6
, pp. 673-682
-
-
Kataoka, N.1
Yong, J.2
Kim, V.N.3
Velazquez, F.4
Perkinson, R.A.5
-
32
-
-
0035980036
-
Nuclear mRNA binding proteins couple pre-mRNA splicing and postsplicing events
-
Kim VN, Dreyfuss G. 2001. Nuclear mRNA binding proteins couple pre-mRNA splicing and postsplicing events. Mol. Cells 12:1-10
-
(2001)
Mol. Cells
, vol.12
, pp. 1-10
-
-
Kim, V.N.1
Dreyfuss, G.2
-
33
-
-
0034672093
-
The spliceosome depositsmultiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir H, Izaurralde E, Maquat LE, Moore MJ. 2000. The spliceosome depositsmultiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J. 19:6860-69
-
(2000)
EMBO J.
, vol.19
, pp. 6860-6869
-
-
Le Hir, H.1
Izaurralde, E.2
Maquat, L.E.3
Moore, M.J.4
-
34
-
-
0034193569
-
Pre-mRNA splicing alters mRNP composition: Evidence for stable association of proteins at exon-exon junctions
-
Le Hir H, Moore MJ, Maquat LE. 2000. Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions. Genes Dev. 14:1098-108
-
(2000)
Genes Dev.
, vol.14
, pp. 1098-1108
-
-
Le Hir, H.1
Moore, M.J.2
Maquat, L.E.3
-
35
-
-
84869087484
-
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex
-
Sauliere J, Murigneux V, Wang Z, Marquenet E, Barbosa I, et al. 2012. CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. Nat. Struct. Mol. Biol. 19:1124-31
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1124-1131
-
-
Sauliere, J.1
Murigneux, V.2
Wang, Z.3
Marquenet, E.4
Barbosa, I.5
-
36
-
-
84869090905
-
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus
-
Singh G, Kucukural A, Cenik C, Leszyk JD, Shaffer SA, et al. 2012. The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. Cell 151:750-64
-
(2012)
Cell
, vol.151
, pp. 750-764
-
-
Singh, G.1
Kucukural, A.2
Cenik, C.3
Leszyk, J.D.4
Shaffer, S.A.5
-
37
-
-
27144445082
-
The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity
-
Ballut L, Marchadier B, Baguet A, Tomasetto C, Seraphin B, Le Hir H. 2005. The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity. Nat. Struct. Mol. Biol. 12:861-69
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 861-869
-
-
Ballut, L.1
Marchadier, B.2
Baguet, A.3
Tomasetto, C.4
Seraphin, B.5
Le Hir, H.6
-
38
-
-
1842577707
-
EIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay
-
Shibuya T, Tange TO, Sonenberg N, Moore MJ. 2004. eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay. Nat. Struct. Mol. Biol. 11:346-51
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 346-351
-
-
Shibuya, T.1
Tange, T.O.2
Sonenberg, N.3
Moore, M.J.4
-
39
-
-
33845902802
-
Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment
-
Merz C, Urlaub H, Will CL, Lührmann R. 2007. Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment. RNA 13:116-28
-
(2007)
RNA
, vol.13
, pp. 116-128
-
-
Merz, C.1
Urlaub, H.2
Will, C.L.3
Lührmann, R.4
-
40
-
-
34547413345
-
Splicing remodels messenger ribonucleoprotein architecture via eIF4A3- dependent and -independent recruitment of exon junction complex components
-
Zhang Z, Krainer AR. 2007. Splicing remodels messenger ribonucleoprotein architecture via eIF4A3- dependent and -independent recruitment of exon junction complex components. PNAS 104:11574-79
-
(2007)
PNAS
, vol.104
, pp. 11574-11579
-
-
Zhang, Z.1
Krainer, A.R.2
-
42
-
-
80053592213
-
Nucleophosmin deposition during mRNA 3′ end processing influences poly(A) tail length
-
Sagawa F, Ibrahim H, Morrison AL, Wilusz CJ, Wilusz J. 2011. Nucleophosmin deposition during mRNA 3′ end processing influences poly(A) tail length. EMBO J. 30:3994-4005
-
(2011)
EMBO J.
, vol.30
, pp. 3994-4005
-
-
Sagawa, F.1
Ibrahim, H.2
Morrison, A.L.3
Wilusz, C.J.4
Wilusz, J.5
-
43
-
-
41349111453
-
The structure and functions of NPM1/nucleophsmin/B23, amultifunctional nucleolar acidic protein
-
Okuwaki M. 2008. The structure and functions of NPM1/nucleophsmin/B23, amultifunctional nucleolar acidic protein. J. Biochem. 143:441-448
-
(2008)
J. Biochem.
, vol.143
, pp. 441-448
-
-
Okuwaki, M.1
-
44
-
-
84455200588
-
Single-molecule mRNA decay measurements reveal promoter-regulated mRNA stability in yeast
-
Trcek T, Larson DR, Moldon A, Query CC, Singer RH. 2011. Single-molecule mRNA decay measurements reveal promoter-regulated mRNA stability in yeast. Cell 147:1484-97
-
(2011)
Cell
, vol.147
, pp. 1484-1497
-
-
Trcek, T.1
Larson, D.R.2
Moldon, A.3
Query, C.C.4
Singer, R.H.5
-
45
-
-
84455167601
-
Promoter elements regulate cytoplasmic mRNA decay
-
Bregman A, Avraham-Kelbert M, Barkai O, Duek L, Guterman A, Choder M. 2011. Promoter elements regulate cytoplasmic mRNA decay. Cell 147:1473-83
-
(2011)
Cell
, vol.147
, pp. 1473-1483
-
-
Bregman, A.1
Avraham-Kelbert, M.2
Barkai, O.3
Duek, L.4
Guterman, A.5
Choder, M.6
-
46
-
-
84906690444
-
Promoter sequences direct cytoplasmic localization and translation ofmRNAs during starvation in yeast
-
Zid BM, O'Shea EK. 2014. Promoter sequences direct cytoplasmic localization and translation ofmRNAs during starvation in yeast. Nature 514:117-21
-
(2014)
Nature
, vol.514
, pp. 117-121
-
-
Zid, B.M.1
O'shea, E.K.2
-
47
-
-
84915802053
-
The translation elongation factor eEF1A1 couples transcription to translation during heat shock response
-
Vera M, Pani B, Griffiths LA, Muchardt C, Abbott CM, et al. 2014. The translation elongation factor eEF1A1 couples transcription to translation during heat shock response. eLife 3:e03164
-
(2014)
ELife
, vol.3
, pp. e03164
-
-
Vera, M.1
Pani, B.2
Griffiths, L.A.3
Muchardt, C.4
Abbott, C.M.5
-
48
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz AG, Munschauer M, Schwanhäusser B, Vasile A, Murakawa Y, et al. 2012. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 46:674-90
-
(2012)
Mol. Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
Munschauer, M.2
Schwanhäusser, B.3
Vasile, A.4
Murakawa, Y.5
-
49
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, et al. 2012. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149:1393-406
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
-
52
-
-
0034719392
-
The DExH protein NPH-II is a processive and directional motor for unwinding RNA
-
Jankowsky E, Gross CH, Shuman S, Pyle AM. 2000. The DExH protein NPH-II is a processive and directional motor for unwinding RNA. Nature 403:447-51
-
(2000)
Nature
, vol.403
, pp. 447-451
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
53
-
-
34548842257
-
Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome
-
Tanaka N, Aronova A, Schwer B. 2007. Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome. Genes Dev. 21:2312-25
-
(2007)
Genes Dev.
, vol.21
, pp. 2312-2325
-
-
Tanaka, N.1
Aronova, A.2
Schwer, B.3
-
54
-
-
4143088149
-
Kinesin transports RNA: Isolation and characterization of an RNA-transporting granule
-
Kanai Y, Dohmae N, Hirokawa N. 2004. Kinesin transports RNA: isolation and characterization of an RNA-transporting granule. Neuron 43:513-25
-
(2004)
Neuron
, vol.43
, pp. 513-525
-
-
Kanai, Y.1
Dohmae, N.2
Hirokawa, N.3
-
55
-
-
0025865421
-
Homology between IRE-BP, a regulatory RNA-binding protein, aconitase, and isopropylmalate isomerase
-
Hentze MW, Argos P. 1991. Homology between IRE-BP, a regulatory RNA-binding protein, aconitase, and isopropylmalate isomerase. Nucleic Acids Res. 19:1739-40
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 1739-1740
-
-
Hentze, M.W.1
Argos, P.2
-
56
-
-
0026062191
-
Structural relationship between an iron-regulated RNA-binding protein (IRE-BP) and aconitase: Functional implications
-
Rouault TA, Stout CD, Kaptain S, Harford JB, Klausner RD. 1991. Structural relationship between an iron-regulated RNA-binding protein (IRE-BP) and aconitase: functional implications. Cell 64:881-83
-
(1991)
Cell
, vol.64
, pp. 881-883
-
-
Rouault, T.A.1
Stout, C.D.2
Kaptain, S.3
Harford, J.B.4
Klausner, R.D.5
-
58
-
-
84904438534
-
Allosteric inhibition of a stem cell RNA-binding protein by an intermediary metabolite
-
Clingman CC, Deveau LM, Hay SA, Genga RM, Shandilya SM, et al. 2014. Allosteric inhibition of a stem cell RNA-binding protein by an intermediary metabolite. eLife 3:e02848
-
(2014)
ELife
, vol.3
, pp. e02848
-
-
Clingman, C.C.1
Deveau, L.M.2
Hay, S.A.3
Genga, R.M.4
Shandilya, S.M.5
-
59
-
-
84922180958
-
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
-
Carlile TM, Rojas-Duran MF, Zinshteyn B, Shin H, Bartoli KM, Gilbert WV. 2014. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature 515:143-46
-
(2014)
Nature
, vol.515
, pp. 143-146
-
-
Carlile, T.M.1
Rojas-Duran, M.F.2
Zinshteyn, B.3
Shin, H.4
Bartoli, K.M.5
Gilbert, W.V.6
-
60
-
-
84860751168
-
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
-
Squires JE, Patel HR, Nousch M, Sibbritt T, Humphreys DT, et al. 2012. Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic Acids Res. 40:5023-33
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5023-5033
-
-
Squires, J.E.1
Patel, H.R.2
Nousch, M.3
Sibbritt, T.4
Humphreys, D.T.5
-
61
-
-
84906346430
-
Reading RNA methylation codes through methyl-specific binding proteins
-
Wang X, He C. 2014. Reading RNA methylation codes through methyl-specific binding proteins. RNA Biol. 11:669-72
-
(2014)
RNA Biol.
, vol.11
, pp. 669-672
-
-
Wang, X.1
He, C.2
-
62
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
Islam S, Kjällquist U, Moliner A, Zajac P, Fan JB, et al. 2011. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res. 21:1160-67
-
(2011)
Genome Res.
, vol.21
, pp. 1160-1167
-
-
Islam, S.1
Kjällquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
-
63
-
-
84895562012
-
From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
-
Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, et al. 2014. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. Genome Res. 24:496-510
-
(2014)
Genome Res.
, vol.24
, pp. 496-510
-
-
Marinov, G.K.1
Williams, B.A.2
McCue, K.3
Schroth, G.P.4
Gertz, J.5
-
64
-
-
84878151459
-
Alternative cleavage and polyadenylation: The long and short of it
-
Tian B, Manley JL. 2013. Alternative cleavage and polyadenylation: the long and short of it. Trends Biochem. Sci. 38:312-20
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 312-320
-
-
Tian, B.1
Manley, J.L.2
-
65
-
-
84887053121
-
Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
-
Lianoglou S, Garg V, Yang JL, Leslie CS, Mayr C. 2013. Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression. Genes Dev. 27:2380-96
-
(2013)
Genes Dev.
, vol.27
, pp. 2380-2396
-
-
Lianoglou, S.1
Garg, V.2
Yang, J.L.3
Leslie, C.S.4
Mayr, C.5
-
66
-
-
84877111454
-
Widespread and extensive lengthening of 3′ UTRs in the mammalian brain
-
Miura P, Shenker S, Andreu-Agullo C, Westholm JO, Lai EC. 2013. Widespread and extensive lengthening of 3′ UTRs in the mammalian brain. Genome Res. 23:812-25
-
(2013)
Genome Res.
, vol.23
, pp. 812-825
-
-
Miura, P.1
Shenker, S.2
Andreu-Agullo, C.3
Westholm, J.O.4
Lai, E.C.5
-
67
-
-
68749113985
-
Widespread shortening of 3′ UTRsby alternative cleavage and polyadenylation activates oncogenes in cancer cells
-
Mayr C, Bartel DP. 2009. Widespread shortening of 3′ UTRsby alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138:673-84
-
(2009)
Cell
, vol.138
, pp. 673-684
-
-
Mayr, C.1
Bartel, D.P.2
-
68
-
-
30044442791
-
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
-
Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, et al. 2006. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res. 16:55-65
-
(2006)
Genome Res.
, vol.16
, pp. 55-65
-
-
Kimura, K.1
Wakamatsu, A.2
Suzuki, Y.3
Ota, T.4
Nishikawa, T.5
-
69
-
-
33847250395
-
Mouse and rat BDNF gene structure and expression revisited
-
Aid T, Kazantseva A, Piirsoo M, Palm K, Timmusk T. 2007. Mouse and rat BDNF gene structure and expression revisited. J. Neurosci. Res. 85:525-35
-
(2007)
J. Neurosci. Res.
, vol.85
, pp. 525-535
-
-
Aid, T.1
Kazantseva, A.2
Piirsoo, M.3
Palm, K.4
Timmusk, T.5
-
70
-
-
52049127039
-
From synapse to nucleus: Calcium-dependent gene transcription in the control of synapse development and function
-
Greer PL, Greenberg ME. 2008. From synapse to nucleus: calcium-dependent gene transcription in the control of synapse development and function. Neuron 59:846-60
-
(2008)
Neuron
, vol.59
, pp. 846-860
-
-
Greer, P.L.1
Greenberg, M.E.2
-
71
-
-
38549136876
-
Transcript-specific decapping and regulated stability by the human Dcp2 decapping protein
-
Li Y, Song MG, Kiledjian M. 2008. Transcript-specific decapping and regulated stability by the human Dcp2 decapping protein. Mol. Cell. Biol. 28:939-48
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 939-948
-
-
Li, Y.1
Song, M.G.2
Kiledjian, M.3
-
72
-
-
84869834168
-
Alternative transcription start site selection leads to large differences in translation activity in yeast
-
Rojas-Duran MF, Gilbert WV. 2012. Alternative transcription start site selection leads to large differences in translation activity in yeast. RNA 18:2299-305
-
(2012)
RNA
, vol.18
, pp. 2299-2305
-
-
Rojas-Duran, M.F.1
Gilbert, W.V.2
-
73
-
-
84885038939
-
Frac-seq reveals isoform-specific recruitment to polyribosomes
-
Sterne-Weiler T, Martinez-Nunez RT, Howard JM, Cvitovik I, Katzman S, et al. 2013. Frac-seq reveals isoform-specific recruitment to polyribosomes. Genome Res. 23:1615-23
-
(2013)
Genome Res.
, vol.23
, pp. 1615-1623
-
-
Sterne-Weiler, T.1
Martinez-Nunez, R.T.2
Howard, J.M.3
Cvitovik, I.4
Katzman, S.5
-
74
-
-
84877818178
-
Nonsense-mediatedmRNA decay:mechanisms of substratemRNArecognition and degradation inmammalian cells
-
Schweingruber C, Rufener SC, Zünd D, Yamashita A, Mühlemann O. 2013. Nonsense-mediatedmRNA decay:mechanisms of substratemRNArecognition and degradation inmammalian cells. Biochim. Biophys. Acta 1829:612-23
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 612-623
-
-
Schweingruber, C.1
Rufener, S.C.2
Zünd, D.3
Yamashita, A.4
Mühlemann, O.5
-
75
-
-
48149095822
-
Alternative splicing resulting in nonsense-mediated mRNA decay: What is the meaning of nonsense?
-
McGlincy NJ, Smith CW. 2008. Alternative splicing resulting in nonsense-mediated mRNA decay: What is the meaning of nonsense? Trends Biochem. Sci. 33:385-93
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 385-393
-
-
McGlincy, N.J.1
Smith, C.W.2
-
76
-
-
84905829118
-
Emerging functions of alternative splicing coupled with nonsensemediated decay
-
Hamid FM, Makeyev EV. 2014. Emerging functions of alternative splicing coupled with nonsensemediated decay. Biochem. Soc. Trans. 42:1168-73
-
(2014)
Biochem. Soc. Trans
, vol.42
, pp. 1168-1173
-
-
Hamid, F.M.1
Makeyev, E.V.2
-
77
-
-
84869104652
-
Introns in UTRs: Why we should stop ignoring them
-
Bicknell AA, Cenik C, Chua HN, Roth FP, Moore MJ. 2012. Introns in UTRs: why we should stop ignoring them. Bioessays 34:1025-34
-
(2012)
Bioessays
, vol.34
, pp. 1025-1034
-
-
Bicknell, A.A.1
Cenik, C.2
Chua, H.N.3
Roth, F.P.4
Moore, M.J.5
-
78
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis T, Reed R. 2002. An extensive network of coupling among gene expression machines. Nature 416:499-506
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
79
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore MJ, Proudfoot NJ. 2009. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136:688-700
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
80
-
-
33745944934
-
Direct interactions between subunits ofCPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing
-
Kyburz A, Friedlein A, Langen H, Keller W. 2006. Direct interactions between subunits ofCPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing. Mol. Cell 23:195-205
-
(2006)
Mol. Cell
, vol.23
, pp. 195-205
-
-
Kyburz, A.1
Friedlein, A.2
Langen, H.3
Keller, W.4
-
81
-
-
0034008058
-
The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3′-end processing and splicing
-
Vagner S, Vagner C, Mattaj IW. 2000. The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3′-end processing and splicing. Genes Dev. 14:403-13
-
(2000)
Genes Dev.
, vol.14
, pp. 403-413
-
-
Vagner, S.1
Vagner, C.2
Mattaj, I.W.3
-
82
-
-
84867160564
-
The RNA polymerase IICTD coordinates transcription andRNAprocessing
-
Hsin JP, Manley JL. 2012. The RNA polymerase IICTD coordinates transcription andRNAprocessing. Genes Dev. 26:2119-37
-
(2012)
Genes Dev.
, vol.26
, pp. 2119-2137
-
-
Hsin, J.P.1
Manley, J.L.2
-
83
-
-
0021240024
-
In vitro transcription from the adenovirus 2 major late promoter utilizing templates truncated at promoter-proximal sites
-
Jove R, Manley JL. 1984. In vitro transcription from the adenovirus 2 major late promoter utilizing templates truncated at promoter-proximal sites. J. Biol. Chem. 259:8513-21
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 8513-8521
-
-
Jove, R.1
Manley, J.L.2
-
84
-
-
0027166316
-
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes
-
Rasmussen EB, Lis JT. 1993. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. PNAS 90:7923-27
-
(1993)
PNAS
, vol.90
, pp. 7923-7927
-
-
Rasmussen, E.B.1
Lis, J.T.2
-
85
-
-
33845626622
-
Human mRNA export machinery recruited to the 5′ end of mRNA
-
Cheng H, Dufu K, Lee CS, Hsu JL, Dias A, Reed R. 2006. Human mRNA export machinery recruited to the 5′ end of mRNA. Cell 127:1389-400
-
(2006)
Cell
, vol.127
, pp. 1389-1400
-
-
Cheng, H.1
Dufu, K.2
Lee, C.S.3
Hsu, J.L.4
Dias, A.5
Reed, R.6
-
86
-
-
84880650073
-
The nuclear cap-binding complex interacts with the U4/U6 U5 tri-snRNP and promotes spliceosome assembly in mammalian cells
-
Pabis M, Neufeld N, Steiner MC, Bojic T, Shav-Tal Y, Neugebauer KM. 2013. The nuclear cap-binding complex interacts with the U4/U6 U5 tri-snRNP and promotes spliceosome assembly in mammalian cells. RNA 19:1054-63
-
(2013)
RNA
, vol.19
, pp. 1054-1063
-
-
Pabis, M.1
Neufeld, N.2
Steiner, M.C.3
Bojic, T.4
Shav-Tal, Y.5
Neugebauer, K.M.6
-
87
-
-
21244493903
-
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
-
Görnemann J, Kotovic KM, Hujer K, Neugebauer KM. 2005. Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol. Cell 19:53-63
-
(2005)
Mol. Cell
, vol.19
, pp. 53-63
-
-
Görnemann, J.1
Kotovic, K.M.2
Hujer, K.3
Neugebauer, K.M.4
-
88
-
-
0036826885
-
5′ exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly
-
Reichert VL, Le Hir H, Jurica MS, Moore MJ. 2002. 5′ exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly. Genes Dev. 16:2778-91
-
(2002)
Genes Dev.
, vol.16
, pp. 2778-2791
-
-
Reichert, V.L.1
Le Hir, H.2
Jurica, M.S.3
Moore, M.J.4
-
89
-
-
77954387023
-
ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
-
Konig J, Zarnack K, Rot G, Curk T, Kayikci M, et al. 2010. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat. Struct. Mol. Biol. 17:909-15
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 909-915
-
-
Konig, J.1
Zarnack, K.2
Rot, G.3
Curk, T.4
Kayikci, M.5
-
90
-
-
0028157139
-
The C-protein tetramer binds 230 to 240 nucleotides of pre-mRNA and nucleates the assembly of 40S heterogeneous nuclear ribonucleoprotein particles
-
Huang M, Rech JE, Northington SJ, Flicker PF, Mayeda A, et al. 1994. The C-protein tetramer binds 230 to 240 nucleotides of pre-mRNA and nucleates the assembly of 40S heterogeneous nuclear ribonucleoprotein particles. Mol. Cell. Biol. 14:518-33
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 518-533
-
-
Huang, M.1
Rech, J.E.2
Northington, S.J.3
Flicker, P.F.4
Mayeda, A.5
-
91
-
-
0035025061
-
Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA
-
Huang Y, Steitz JA. 2001. Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol. Cell 7:899-905
-
(2001)
Mol. Cell
, vol.7
, pp. 899-905
-
-
Huang, Y.1
Steitz, J.A.2
-
92
-
-
0344211508
-
SR splicing factors serve as adapter proteins for TAPdependent mRNA export
-
Huang Y, Gattoni R, Stévenin J, Steitz JA. 2003. SR splicing factors serve as adapter proteins for TAPdependent mRNA export. Mol. Cell 11:837-43
-
(2003)
Mol. Cell
, vol.11
, pp. 837-843
-
-
Huang, Y.1
Gattoni, R.2
Stévenin, J.3
Steitz, J.A.4
-
93
-
-
0027298705
-
A mouse y box protein, MSY1, is associated with paternal mRNA in spermatocytes
-
Tafuri SR, Familari M, Wolffe AP. 1993. A mouse Y box protein, MSY1, is associated with paternal mRNA in spermatocytes. J. Biol. Chem. 268:12213-20
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 12213-12220
-
-
Tafuri, S.R.1
Familari, M.2
Wolffe, A.P.3
-
94
-
-
84855286267
-
Genome instability and transcription elongation impairment in human cells depleted of THO/TREX
-
Domínguez-Sánchez MS, Barroso S, Gómez-González B, Luna R, Aguilera A. 2011. Genome instability and transcription elongation impairment in human cells depleted of THO/TREX. PLOS Genet. 7:e1002386
-
(2011)
PLOS Genet.
, vol.7
, pp. e1002386
-
-
Domínguez-Sánchez, M.S.1
Barroso, S.2
Gómez-González, B.3
Luna, R.4
Aguilera, A.5
-
95
-
-
23744455164
-
Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability
-
Li X, Manley JL. 2005. Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122:365-78
-
(2005)
Cell
, vol.122
, pp. 365-378
-
-
Li, X.1
Manley, J.L.2
-
96
-
-
36249028129
-
The RNA binding protein RNPS1 alleviates ASF/SF2 depletion-induced genomic instability
-
Li X, Niu T, Manley JL. 2007. The RNA binding protein RNPS1 alleviates ASF/SF2 depletion-induced genomic instability. RNA 13:2108-15
-
(2007)
RNA
, vol.13
, pp. 2108-2115
-
-
Li, X.1
Niu, T.2
Manley, J.L.3
-
97
-
-
77951667779
-
The exon junction complex component Magoh controls brain size by regulating neural stem cell division
-
Silver DL, Watkins-Chow DE, Schreck KC, Pierfelice TJ, Larson DM, et al. 2010. The exon junction complex component Magoh controls brain size by regulating neural stem cell division. Nat. Neurosci. 13:551-58
-
(2010)
Nat. Neurosci
, vol.13
, pp. 551-558
-
-
Silver, D.L.1
Watkins-Chow, D.E.2
Schreck, K.C.3
Pierfelice, T.J.4
Larson, D.M.5
-
98
-
-
67651119997
-
A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability
-
Paulsen RD, Soni DV, Wollman R, Hahn AT, Yee MC, et al. 2009. A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability. Mol. Cell 35:228-39
-
(2009)
Mol. Cell
, vol.35
, pp. 228-239
-
-
Paulsen, R.D.1
Soni, D.V.2
Wollman, R.3
Hahn, A.T.4
Yee, M.C.5
-
99
-
-
0034926141
-
Packing and delivery of a genetic message
-
Daneholt B. 2001. Packing and delivery of a genetic message. Chromosoma 110:173-85
-
(2001)
Chromosoma
, vol.110
, pp. 173-185
-
-
Daneholt, B.1
-
100
-
-
0020617386
-
Visualization of the formation and transport of a specific hnRNP particle
-
Skoglund U, Andersson K, Björkroth B, Lamb MM, Daneholt B. 1983. Visualization of the formation and transport of a specific hnRNP particle. Cell 34:847-55
-
(1983)
Cell
, vol.34
, pp. 847-855
-
-
Skoglund, U.1
Andersson, K.2
Björkroth, B.3
Lamb, M.M.4
Daneholt, B.5
-
101
-
-
71749088820
-
Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure
-
Batisse J, Batisse C, Budd A, Böttcher B, Hurt E. 2009. Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. J. Biol. Chem. 284:34911-17
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 34911-34917
-
-
Batisse, J.1
Batisse, C.2
Budd, A.3
Böttcher, B.4
Hurt, E.5
-
102
-
-
84891697468
-
RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome
-
Silverman IM, Li F, Alexander A, Goff L, Trapnell C, et al. 2014. RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome. Genome Biol. 15:R3
-
(2014)
Genome Biol.
, vol.15
, pp. R3
-
-
Silverman, I.M.1
Li, F.2
Alexander, A.3
Goff, L.4
Trapnell, C.5
-
103
-
-
68949187846
-
MRNA nuclear export at a glance
-
Carmody SR, Wente SR. 2009. mRNA nuclear export at a glance. J. Cell Sci. 122:1933-37
-
(2009)
J. Cell Sci.
, vol.122
, pp. 1933-1937
-
-
Carmody, S.R.1
Wente, S.R.2
-
104
-
-
42149178405
-
Splicing promotes rapid and efficient mRNA export in mammalian cells
-
Valencia P, Dias AP, Reed R. 2008. Splicing promotes rapid and efficient mRNA export in mammalian cells. PNAS 105:3386-91
-
(2008)
PNAS
, vol.105
, pp. 3386-3391
-
-
Valencia, P.1
Dias, A.P.2
Reed, R.3
-
105
-
-
34250735674
-
RNA regulons: Coordination of post-transcriptional events
-
Keene JD. 2007. RNA regulons: coordination of post-transcriptional events. Nat. Rev. Genet. 8:533-43
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
106
-
-
79955613250
-
Genome analysis reveals interplay between 5′ UTR introns and nuclear mRNA export for secretory and mitochondrial genes
-
Cenik C, Chua HN, Zhang H, Tarnawsky SP, Akef A, et al. 2011. Genome analysis reveals interplay between 5′ UTR introns and nuclear mRNA export for secretory and mitochondrial genes. PLOS Genet. 7:e1001366
-
(2011)
PLOS Genet.
, vol.7
, pp. e1001366
-
-
Cenik, C.1
Chua, H.N.2
Zhang, H.3
Tarnawsky, S.P.4
Akef, A.5
-
107
-
-
0034597057
-
Protein ligands to HuR modulate its interaction with target mRNAs in vivo
-
Brennan CM, Gallouzi IE, Steitz JA. 2000. Protein ligands to HuR modulate its interaction with target mRNAs in vivo. J. Cell Biol. 151:1-14
-
(2000)
J. Cell Biol.
, vol.151
, pp. 1-14
-
-
Brennan, C.M.1
Gallouzi, I.E.2
Steitz, J.A.3
-
108
-
-
65949083999
-
The eukaryotic translation initiation factor 4E (eIF4E) and HuR RNA operons collaboratively regulate the expression of survival and proliferative genes
-
Topisirovic I, Siddiqui N, Borden KL. 2009. The eukaryotic translation initiation factor 4E (eIF4E) and HuR RNA operons collaboratively regulate the expression of survival and proliferative genes. Cell Cycle 8:960-61
-
(2009)
Cell Cycle
, vol.8
, pp. 960-961
-
-
Topisirovic, I.1
Siddiqui, N.2
Borden, K.L.3
-
109
-
-
84860852545
-
Nuclear envelope budding enables large ribonucleoprotein particle export during synapticWnt signaling
-
Speese SD, Ashley J, Jokhi V, Nunnari J, Barria R, et al. 2012. Nuclear envelope budding enables large ribonucleoprotein particle export during synapticWnt signaling. Cell 149:832-46
-
(2012)
Cell
, vol.149
, pp. 832-846
-
-
Speese, S.D.1
Ashley, J.2
Jokhi, V.3
Nunnari, J.4
Barria, R.5
-
110
-
-
77957370148
-
In vivo imaging of labelled endogenous β-actin mRNA during nucleocytoplasmic transport
-
Grünwald D, Singer RH. 2010. In vivo imaging of labelled endogenous β-actin mRNA during nucleocytoplasmic transport. Nature 467:604-7
-
(2010)
Nature
, vol.467
, pp. 604-607
-
-
Grünwald, D.1
Singer, R.H.2
-
111
-
-
84860450204
-
To the pore and through the pore: A story of mRNA export kinetics
-
Oeffinger M, Zenklusen D. 2012. To the pore and through the pore: a story of mRNA export kinetics. Biochim. Biophys. Acta 1819:494-506
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 494-506
-
-
Oeffinger, M.1
Zenklusen, D.2
-
112
-
-
36749016233
-
The DEAD-box protein Dbp5 controls mRNA export by triggering specific RNA:protein remodeling events
-
Tran EJ, Zhou Y, Corbett AH, Wente SR. 2007. The DEAD-box protein Dbp5 controls mRNA export by triggering specific RNA:protein remodeling events. Mol. Cell 28:850-59
-
(2007)
Mol. Cell
, vol.28
, pp. 850-859
-
-
Tran, E.J.1
Zhou, Y.2
Corbett, A.H.3
Wente, S.R.4
-
113
-
-
62049084648
-
The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner
-
von Moeller H, Basquin C, Conti E. 2009. The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner. Nat. Struct. Mol. Biol. 16:247-54
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 247-254
-
-
Von Moeller, H.1
Basquin, C.2
Conti, E.3
-
114
-
-
84860425478
-
Structural basis for the assembly and disassembly of mRNA nuclear export complexes
-
Valkov E, Dean JC, Jani D, Kuhlmann SI, Stewart M. 2012. Structural basis for the assembly and disassembly of mRNA nuclear export complexes. Biochim. Biophys. Acta 1819:578-92
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 578-592
-
-
Valkov, E.1
Dean, J.C.2
Jani, D.3
Kuhlmann, S.I.4
Stewart, M.5
-
115
-
-
69949149572
-
Themolecular basis for the regulation of the cap-binding complex by the importins
-
Dias SM, Wilson KF, Rojas KS, Ambrosio AL, Cerione RA. 2009. Themolecular basis for the regulation of the cap-binding complex by the importins. Nat. Struct. Mol. Biol. 16:930-37
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 930-937
-
-
Dias, S.M.1
Wilson, K.F.2
Rojas, K.S.3
Ambrosio, A.L.4
Cerione, R.A.5
-
116
-
-
0030272377
-
Importin provides a link between nuclear protein import and U snRNA export
-
Görlich D, Kraft R, Kostka S, Vogel F, Hartmann E, et al. 1996. Importin provides a link between nuclear protein import and U snRNA export. Cell 87:21-32
-
(1996)
Cell
, vol.87
, pp. 21-32
-
-
Görlich, D.1
Kraft, R.2
Kostka, S.3
Vogel, F.4
Hartmann, E.5
-
117
-
-
84890976937
-
Interactome of two diverse RNA granules links mRNA localization to translational repression in neurons
-
Fritzsche R, Karra D, Bennett KL, Ang FY, Heraud-Farlow JE, et al. 2013. Interactome of two diverse RNA granules links mRNA localization to translational repression in neurons. Cell Rep. 5:1749-62
-
(2013)
Cell Rep.
, vol.5
, pp. 1749-1762
-
-
Fritzsche, R.1
Karra, D.2
Bennett, K.L.3
Ang, F.Y.4
Heraud-Farlow, J.E.5
-
118
-
-
80052411929
-
CBP80-promoted mRNP rearrangements during the pioneer round of translation, nonsense-mediated mRNA decay, and thereafter
-
Maquat LE, Hwang J, Sato H, Tang Y. 2010. CBP80-promoted mRNP rearrangements during the pioneer round of translation, nonsense-mediated mRNA decay, and thereafter. Cold Spring Harb. Symp. Quant. Biol. 75:127-34
-
(2010)
Cold Spring Harb. Symp. Quant. Biol.
, vol.75
, pp. 127-134
-
-
Maquat, L.E.1
Hwang, J.2
Sato, H.3
Tang, Y.4
-
119
-
-
3543032700
-
Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex
-
Bono F, Ebert J, Unterholzner L, Güttler T, Izaurralde E, Conti E. 2004. Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex. EMBO Rep. 5:304-10
-
(2004)
EMBO Rep.
, vol.5
, pp. 304-310
-
-
Bono, F.1
Ebert, J.2
Unterholzner, L.3
Güttler, T.4
Izaurralde, E.5
Conti, E.6
-
121
-
-
3042836378
-
Amolecular link between SR protein dephosphorylation andmRNA export
-
Huang Y, Yario TA, Steitz JA. 2004. Amolecular link between SR protein dephosphorylation andmRNA export. PNAS 101:9666-70
-
(2004)
PNAS
, vol.101
, pp. 9666-9670
-
-
Huang, Y.1
Yario, T.A.2
Steitz, J.A.3
-
122
-
-
84892902609
-
Single β-actin mRNA detection in neurons reveals a mechanism for regulating its translatability
-
Buxbaum AR, Wu B, Singer RH. 2014. Single β-actin mRNA detection in neurons reveals a mechanism for regulating its translatability. Science 343:419-22
-
(2014)
Science
, vol.343
, pp. 419-422
-
-
Buxbaum, A.R.1
Wu, B.2
Singer, R.H.3
-
125
-
-
84892924451
-
Visualization of dynamics of single endogenous mRNA labeled in live mouse
-
Park HY, Lim H, Yoon YJ, Follenzi A, Nwokafor C, et al. 2014. Visualization of dynamics of single endogenous mRNA labeled in live mouse. Science 343:422-24
-
(2014)
Science
, vol.343
, pp. 422-424
-
-
Park, H.Y.1
Lim, H.2
Yoon, Y.J.3
Follenzi, A.4
Nwokafor, C.5
-
126
-
-
0035923735
-
Neuronal RNA granules: A link between RNA localization and stimulation-dependent translation
-
Krichevsky AM, Kosik KS. 2001. Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation. Neuron 32:683-96
-
(2001)
Neuron
, vol.32
, pp. 683-696
-
-
Krichevsky, A.M.1
Kosik, K.S.2
-
127
-
-
49549123825
-
Multiplexed RNA trafficking in oligodendrocytes and neurons
-
Carson JH, Gao Y, Tatavarty V, Levin MK, Korza G, et al. 2008. Multiplexed RNA trafficking in oligodendrocytes and neurons. Biochim. Biophys. Acta 1779:453-58
-
(2008)
Biochim. Biophys. Acta
, vol.1779
, pp. 453-458
-
-
Carson, J.H.1
Gao, Y.2
Tatavarty, V.3
Levin, M.K.4
Korza, G.5
-
128
-
-
84885046767
-
Reactivation of stalled polyribosomes in synaptic plasticity
-
Graber TE, Hébert-Seropian S, Khoutorsky A, David A, Yewdell JW, et al. 2013. Reactivation of stalled polyribosomes in synaptic plasticity. PNAS 110:16205-10
-
(2013)
PNAS
, vol.110
, pp. 16205-16210
-
-
Graber, T.E.1
Hébert-Seropian, S.2
Khoutorsky, A.3
David, A.4
Yewdell, J.W.5
-
130
-
-
67649976463
-
Germline P granules are liquid droplets that localize by controlled dissolution/condensation
-
Brangwynne CP, Eckmann CR, Courson DS, Rybarska A, Hoege C, et al. 2009. Germline P granules are liquid droplets that localize by controlled dissolution/condensation. Science 324:1729-32
-
(2009)
Science
, vol.324
, pp. 1729-1732
-
-
Brangwynne, C.P.1
Eckmann, C.R.2
Courson, D.S.3
Rybarska, A.4
Hoege, C.5
-
131
-
-
84861964894
-
Getting RNA and protein in phase
-
Weber SC, Brangwynne CP. 2012. Getting RNA and protein in phase. Cell 149:1188-91
-
(2012)
Cell
, vol.149
, pp. 1188-1191
-
-
Weber, S.C.1
Brangwynne, C.P.2
-
133
-
-
84888136634
-
The intimate relationships of mRNA decay and translation
-
Roy B, Jacobson A. 2013. The intimate relationships of mRNA decay and translation. Trends Genet. 29:691-99
-
(2013)
Trends Genet.
, vol.29
, pp. 691-699
-
-
Roy, B.1
Jacobson, A.2
-
134
-
-
0033835231
-
Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay
-
Bhattacharya A, Czaplinski K, Trifillis P, He F, Jacobson A, Peltz SW. 2000. Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay. RNA 6:1226-35
-
(2000)
RNA
, vol.6
, pp. 1226-1235
-
-
Bhattacharya, A.1
Czaplinski, K.2
Trifillis, P.3
He, F.4
Jacobson, A.5
Peltz, S.W.6
-
135
-
-
78649949096
-
Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense-mediated mRNA decay
-
Franks TM, Singh G, Lykke-Andersen J. 2010. Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense-mediated mRNA decay. Cell 143:938-50
-
(2010)
Cell
, vol.143
, pp. 938-950
-
-
Franks, T.M.1
Singh, G.2
Lykke-Andersen, J.3
-
136
-
-
84881477715
-
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs
-
Zünd D, Gruber AR, Zavolan M, Mühlemann O. 2013. Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs. Nat. Struct. Mol. Biol. 20:936-43
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 936-943
-
-
Zünd, D.1
Gruber, A.R.2
Zavolan, M.3
Mühlemann, O.4
-
137
-
-
84885069820
-
Global analyses ofUPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay
-
Hurt JA, Robertson AD, Burge CB. 2013. Global analyses ofUPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay. Genome Res. 23:1636-50
-
(2013)
Genome Res.
, vol.23
, pp. 1636-1650
-
-
Hurt, J.A.1
Robertson, A.D.2
Burge, C.B.3
-
138
-
-
84901240387
-
MOV10 is a 5′ to 3′ RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3′ UTRs
-
Gregersen LH, Schueler M, Munschauer M, Mastrobuoni G, Chen W, et al. 2014. MOV10 is a 5′ to 3′ RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3′ UTRs. Mol. Cell 54:573-85
-
(2014)
Mol. Cell
, vol.54
, pp. 573-585
-
-
Gregersen, L.H.1
Schueler, M.2
Munschauer, M.3
Mastrobuoni, G.4
Chen, W.5
-
139
-
-
84876362947
-
Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains
-
Fiorini F, Boudvillain M, Le Hir H. 2013. Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains. Nucleic Acids Res. 41:2404-15
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2404-2415
-
-
Fiorini, F.1
Boudvillain, M.2
Le Hir, H.3
-
140
-
-
41949113083
-
Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay
-
Isken O, Kim YK, Hosoda N, Mayeur GL, Hershey JW, Maquat LE. 2008. Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay. Cell 133:314-27
-
(2008)
Cell
, vol.133
, pp. 314-327
-
-
Isken, O.1
Kim, Y.K.2
Hosoda, N.3
Mayeur, G.L.4
Hershey, J.W.5
Maquat, L.E.6
-
141
-
-
80052642129
-
The DExD/H box ATPase Dhh1 functions in translational repression, mRNA decay, and processing body dynamics
-
Carroll JS, Munchel SE, Weis K. 2011. The DExD/H box ATPase Dhh1 functions in translational repression, mRNA decay, and processing body dynamics. J. Cell Biol. 194:527-37
-
(2011)
J. Cell Biol.
, vol.194
, pp. 527-537
-
-
Carroll, J.S.1
Munchel, S.E.2
Weis, K.3
-
142
-
-
84863688029
-
The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement
-
Sweet T, Kovalak C, Coller J. 2012. The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement. PLOS Biol. 10:e1001342
-
(2012)
PLOS Biol.
, vol.10
, pp. e1001342
-
-
Sweet, T.1
Kovalak, C.2
Coller, J.3
-
143
-
-
79961016813
-
Intermolecular interactions within the abundant DEAD-box protein Dhh1 regulate its activity in vivo
-
Dutta A, Zheng S, Jain D, Cameron CE, Reese JC. 2011. Intermolecular interactions within the abundant DEAD-box protein Dhh1 regulate its activity in vivo. J. Biol. Chem. 286:27454-70
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 27454-27470
-
-
Dutta, A.1
Zheng, S.2
Jain, D.3
Cameron, C.E.4
Reese, J.C.5
-
144
-
-
0019004777
-
Repeating structure of cytoplasmic poly(A)-ribonucleoprotein
-
Baer BW, Kornberg RD. 1980. Repeating structure of cytoplasmic poly(A)-ribonucleoprotein. PNAS 77:1890-99
-
(1980)
PNAS
, vol.77
, pp. 1890-1899
-
-
Baer, B.W.1
Kornberg, R.D.2
|