Structural organization of mRNA complexes with major core mRNP protein YB-1

Nucleic Acids Research

Volumn 32, Issue 18, 2004, Pages 5621-5635

  Skabkin, Maxim A ^b   Kiselyova, Olga I ^a   Chernov, Konstantin G ^b   Sorokin, Alexey V ^b   Dubrovin, Evgeniy V ^a   Yaminsky, Igor V ^a   Vasiliev, Victor D ^b   Ovchinnikov, Lev P ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b INSTITUTE OF PROTEIN RESEARCH   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

COLD SHOCK PROTEIN; CORE PROTEIN; MESSENGER RNA; UNCLASSIFIED DRUG; Y BOX BINDING PROTEIN 1; GLOBIN; MESSENGER RIBONUCLEOPROTEIN; P50 Y BOX BINDING PROTEIN, MAMMALIAN; P50 Y-BOX-BINDING PROTEIN, MAMMALIAN; REPRESSOR PROTEIN; RIBONUCLEOPROTEIN; RNA BINDING PROTEIN;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; ATOMIC FORCE MICROSCOPY; CONTROLLED STUDY; ELECTRON MICROSCOPY; ESCHERICHIA COLI; IMMUNOBLOTTING; IN VITRO STUDY; MOLECULAR WEIGHT; NONHUMAN; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN RNA BINDING; RNA BINDING; RNA SYNTHESIS; RNA TRANSLATION; ANIMAL; CHEMISTRY; DENSITY GRADIENT CENTRIFUGATION; GENETICS; MACROMOLECULE; METABOLISM; ULTRASTRUCTURE;

ANIMALS; CENTRIFUGATION, DENSITY GRADIENT; GLOBINS; MACROMOLECULAR SUBSTANCES; MICROSCOPY, ATOMIC FORCE; REPRESSOR PROTEINS; RIBONUCLEOPROTEINS; RNA, MESSENGER; RNA-BINDING PROTEINS;

EID: 6944244018     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh889     Document Type: Article

References (60)

1. Spirin,A.S. (1996) Masked and translatable messenger ribonucleoproteins in higher eukaryores. In Hershey,J.W.B., Mathews,M.B. and Sonenberg,N. (eds), Translational Control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 319-334.
2. Samarina,O.P. (1996) hnRNP particles. Bioessays, 18, 595-601.
3. Dreyfuss,G., Kim,V.N. and Kataoka,N. (2002) Messenger-RNA-binding proteins and the messages they carry. Nature Rev. Mol. Cell. Biol., 3, 195-205.
4. Keene,J.D. (2001) Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome. Proc. Natl Acad. Sci. USA, 98, 7018-7024.
5. Kloc,M., Zearfoss,N.R. and Etkin,L.D. (2002) Mechanisms of subcellular mRNA localization. Cell, 108, 533-544.
6. Tourriere,H., Chebli,K. and Tazi,J. (2002) mRNA degradation machines in eukaryotic cells. Biochimie, 84, 821-837.
7. Preobrazhensky,A.A. and Spirin,A.S. (1978) Informosomes and their protein components: the present state of knowledge. Prog. Nucleic Acid Res. Mol. Biol., 21, 1-38.
8. Huang,M., Rech,J.E., Northington,S.J., Flicker,P.F., Mayeda,A., Krainer,A.R. and LeStourgeon,W.M. (1994) The C-protein tetramer binds 230 to 240 nucleotides of pre-mRNA and nucleates the assembly of 40S heterogeneous nuclear ribonucleoprotein particles. Mol. Cell. Biol., 14, 518-533.
9. McAfee,J.G., Huang,M., Soltaninassab,S.R., Rech,J.E., Iyengar,S. and LeStourgeon,W.M. (1997) The packaging of pre-mRNA. In Krainer,A.R. (ed.), Eukaryotic mRNA Processing. Oxford University Press, pp. 68-102.
10. Ovchinnikov,L.P., Skabkin,M.A., Ruzanov,P.V. and Evdokimova,V.M. (2001) Major mRNP proteins in the structural organization and function of mRNA in eukaryotic cells. Mol. Biol. (Mosk.), 35, 548-558.
11. Morel,C., Kayibanda,B. and Scherrer,K. (1971) Proteins associated with globin messenger RNA in avian erythroblasts: isolation and comparison with the proteins bound to nuclear messenger-like RNA. FEBS Lett., 18, 84-88.
12. Blobel,G. (1972) Protein tightly bound to globin mRNA. Biochem. Biophys. Res. Commun., 47, 88-95.
13. Kumar,A. and Pederson,T. (1975) Comparison of proteins bound to heterogeneous nuclear RNA and messenger RNA in HeLa cells. J. Mol. Biol., 96, 353-365.
14. Jain,S.K., Pluskal,M.G. and Sarkar,S. (1979) Thermal chromatography of eukaryotic messenger ribonucleoprotein particles on oligo (dT)-cellulose. Evidence for common mRNA-associated proteins in various cell types. FEBS Lett., 97, 84-90.
15. Dreyfuss,G. (1986) Structure and function of nuclear and cytoplasmic ribonucleoprotein particles. Annu. Rev. Cell Biol., 2, 459-498.
16. Blobel,G. (1973) A protein of molecular weight 78,000 bound to the polyadenylate region of eukaryotic messenger RNAs. Proc. Natl Acad. Sci. USA, 70, 924-928.
17. van Venrooij,W.J., van Eekelen,C.A., Jansen,R.T. and Princen,J.M. (1977) Specific poly-A-binding protein of 76,000 molecular weight in polyribosomes is not present on poly A of free cytoplasmic mRNP. Nature, 270, 189-191.
18. Minich,W.B., Maidebura,I.P. and Ovchinnikov,L.P. (1993) Purification and characterization of the major 50-kDa repressor protein from cytoplasmic mRNP of rabbit reticulocytes. Eur. J. Biochem., 212, 633-638.
19. Murray,M.T., Schiller,D.L. and Franke,W.W. (1992) Sequence analysis of cytoplasmic mRNA-binding proteins of Xenopus oocytes identifies a family of RNA-binding proteins. Proc. Natl Acad. Sci. USA 89, 11-15.
20. Tafuri,S.R. and Wolffe,A.P. (1993) Dual roles for transcription and translation factors in the RNA storage particles of Xenopus oocytes. Trends Cell Biol., 3, 94-98.
21. Gu,W., Tekur,S., Reinbold,R., Eppig,J.J., Choi,Y.C., Zheng,J.Z., Murray,M.T. and Hecht,N.B. (1998) Mammalian male and female germ cells express a germ cell-specific Y-Box protein, MSY2. Biol. Reprod., 59, 1266-1274.
22. Evdokimova,V.M., Wei,C.L., Sitikov,A.S., Simonenko,P.N., Lazarev,O.A., Vasilenko,K.S., Ustinov,V.A., Hershey,J.W. and Ovchinnikov,L.P. (1995) The major protein of messenger ribonucleoprotein particles in somatic cells is a member of the Y-box binding transcription factor family. J. Biol. Chem., 270, 3186-3192.
23. Katsu,Y., Yamashita,M. and Nagabama,Y. (1997) Isolation and characterization of goldfish Y box protein, a germ-cell-specific RNA-binding protein. Eur. J. Biochem., 249, 854-861.
24. Minich,W.B. and Ovchinnikov,L.P. (1992) Role of cytoplasmic mRNP proteins in translation. Biochimie, 74, 477-483.
25. Evdokimova,V.M., Kovrigina,E.A., Nashchekin,D.V., Davydova,E.K., Hershey,J.W. and Ovchinnikov,L.P. (1998) The major core protein of messenger ribonucleoprotein particles (p50) promotes initiation of protein biosynthesis in vitro. J. Biol. Chem., 273, 3574-3581.
26. Pisarev,A.V., Skabkin,M.A., Thomas,A.A., Merrick,W.C., Ovchinnikov,L.P. and Shatsky,I.N. (2002) Positive and negative effects of the major mammalian messenger ribonucleoprotein p50 on binding of 40S ribosomal subunits to the initiation codon of beta-globin mRNA. J. Biol. Chem., 277, 15445-15451.
27. Davydova,E.K., Evdokimova,V.M., Ovchinnikov,L.P. and Hershey,J.W. (1997) Overexpression in COS cells of p50, the major core protein associated with mRNA, results in translation inhibition. Nucleic Acids Res., 25, 2911-2916.
28. Nekrasov,M.P., Ivshina,M.P., Chernov,K.G., Kovrigina,E.A., Evdokimova,V.M., Thomas,A.A., Hershey,J.W. and Ovchinnikov,L.P. (2003) The mRNA-binding protein YB-1 (p50) prevents association of the eukaryotic initiation factor eIF4G with mRNA and inhibits protein synthesis at the initiation stage. J. Biol. Chem., 278, 13936-13943.
29. Darnbrough,C.H. and Ford,P.J. (1981) Identification in Xenopus laevis of a class of oocyte-specific proteins bound to messenger RNA. Eur. J. Biochem., 113, 415-424.
30. Richter,J.D. and Smith,L.D. (1984) Reversible inhibition of translation by Xenopus oocyte-specific proteins. Nature, 309, 378-380.
31. Herbert,T.P. and Hecht,N.B. (1999) The mouse Y-box protein, MSY2, is associated with a kinase on non-polysomal mouse testicular mRNAs. Nucleic Acids Res., 27, 1747-1753.
32. Sommerville,J. (1990) RNA-binding phosphoproteins and the regulation of maternal mRNA in Xenopus. J. Reprod. Fertil. Suppl., 42, 225-233.
33. Braddock,M., Muckenthaler,M., White,M.R., Thorburn,A.M., Sommerville,J., Kingsman,A.J. and Kingsman,S.M. (1994) Intron-less RNA injected into the nucleus of Xenopus oocytes accesses a regulated translation control pathway. Nucleic Acids Res., 22, 5255-5264.
34. Wolffe,A.P., Tafuri,S., Ranjan,M. and Familari,M. (1992) The Y-box factors: a family of nucleic acid binding proteins conserved from Escherichia coli to man. New Biol., 4, 290-298.
35. Evdokimova,V., Ruzanov,P., Imataka,H., Raught,B., Svitkin,Y., Ovchinnikov,L.P. and Sonenberg,N. (2001) The major mRNA-associated protein YB-1 is a potent 5′ cap-dependent mRNA stabilizer. EMBO J. 20, 5491-5502.
36. Matsumoto,K. and Wolffe,A.P. (1998) Gene regulation by Y-box proteins: coupling control of transcription and translation. Trends Cell Biol., 8, 318-323.
37. Tafuri,S.R. and Wolffe,A.P. (1992) DNA binding, multimerization, and transcription stimulation by the Xenopus Y box proteins in vitro. New Biol., 4, 349-359.
38. Gaudreault,I., Guay,D. and Lebel,M. (2004) YB-1 promotes strand separation in vitro of duplex DNA containing either mispaired bases or cisplatin modifications, exhibits endonucleolytic activities and binds several DNA repair proteins. Nucleic Acids Res. 32, 316-327.
39. Evdokimova,V.M. and Ovchinnikov,L.P. (1999) Translational regulation by Y-box transcription factor: involvement of the major mRNA-associated protein, p50. Int. J. Biochem. Cell Biol., 31, 139-149.
40. Ustinov,V.A., Skabkin,M.A., Nashchekin,D.V., Evdokimova,V.M. and Ovchinnikov,L.P. (1996) Major p50 protein of the somatic cell cytoplasmic mRNP: expression in Escherichia coli, isolation, and some properties of the recombinant protein. Biochemistry (Mosc.), 61, 559-566.
41. Pokrovskaya,I.D. and Gurevich,V.V. (1994) In vitro transcription: preparative RNA yields in analytical scale reactions. Anal. Biochem., 220, 420-423.
42. Aviv,H. and Leder,P. (1972) Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose. Proc. Natl Acad. Sci. USA, 69, 1408-1412.
43. Filonov,A.S. and Yaminsky,I.V. (1997) SPM Control and Image Processing Software. Chichester: Advance Technologies Center, Moscow.
44. Shlyakhtenko,L.S., Potaman,V.N., Sinden,R.R. and Lyubchenko,Y.L. (1998) Structure and dynamics of supercoil-stabilized DNA cruciforms. J. Mol. Biol., 280, 61-72.
45. Kiselyova,O.I., Galyamov,M.O., Nasikan,N.S., Yaminsky,I.V., Karpova,O.V. and Novikov,V.K. (2002) Scanning probe microscopy of biomacromolecules: nucleic acids, proteins and their complexes. In Buzanaeva,E.V. and Scharff,P. (eds), Frontiers of Multifunctional Nanosystems. Kluwer Academic Publishers, Dordrecht, pp. 321-330.
46. Vasiliev,V.D. and Koteliansky,V.E. (1979) Freeze-drying and high-resolution shadowing in electron microscopy of Escherichia coli ribosomes. Meth. Enzymol., 59, 612-629.
47. Valentine,R.C., Shapiro,B.M. and Stadtman,E.R. (1968) Regulation of glutamine synthetase. XII. Electron microscopy of the enzyme from Escherichia coli. Biochemistry, 7, 2143-2152.
48. Ovchinnikov,L.P., Avanesov,A.C. and Spirin,A.S. (1969) Informosomes from loach embryos. Mol. Biol. (Mosk.), 3, 465-472.
49. Ovchinnikov,L.P., Voronina,A.S., Stepanov,A.S., Belitsina,N.V. and Spirin,A.S. (1968) Informosome-like complexes were formed by RNA adding to animal cell homogenates. Mol. Biol. (Mosk. 2, 752-763.
50. Bag,J. (1984) Cytoplasmic mRNA-protein complexes of chicken muscle cells and their role in protein synthesis. Eur. J. Biochem., 141, 247-254.
51. Daneholt,B. (2001) Assembly and transport of a premessenger RNP particle. Proc. Natl Acad. Sci. USA, 98, 7012-7017.
52. Greenberg,J.R. (1981) The polyribosomal mRNA-protein complex is a dynamic structure. Proc. Natl Acad. Sci. USA, 78, 2923-2926.
53. Lyubchenko,Y.L., Oden,P.I., Lampner,D., Lindsay,S.M. and Dunker,K.A. (1993) Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces. Nucleic Acids Res., 21, 1117-1123.
54. Lyubchenko,Y.L. and Shlyakhtenko,L.S. (1997) Visualization of supercoiled DNA with atomic force microscopy in situ. Proc. Natl Acad. Sci. USA, 94, 496-501.
55. Glass,J. and Wertz,G.W. (1980) Different base per unit length ratios exist in single-stranded RNA and single-stranded DNA. Nucleic Acids Res., 8, 5739-5751.
56. Drygin,Y.F., Bordunova,O.A., Gallyamov,M.O. and Yaminsky,I.V. (1998) Atomic force microscopy examination of tobacco mosaic virus and virion RNA. FEBS Lett., 425, 217-221.
57. Soop,T., Nashchekin,D., Zhao,J., Sun,X., Alzhanova-Ericsson,A.T., Bjorkroth,B., Ovchinnikov,L. and Daneholt,B. (2003) A p50-like Y-box protein with a putative translational role becomes associated with pre-mRNA concomitant with transcription. J. Cell Sci., 116, 1493-1503.
58. Kick,D., Barrett,P., Cummings,A. and Sommerville,J. (1987) Phosphorylation of a 60 kDa polypeptide from Xenopus oocytes blocks messenger RNA translation. Nucleic Acids Res., 15, 4099-4109.
59. Matsumoto,K., Tanaka,K.J., Aoki,K., Sameshima,M. and Tsujimoto,M. (2003) Visualization of the reconstituted FRGY2-mRNA complexes by electron microscopy. Biochem. Biophys. Res. Commun., 306, 53-58.
60. Samarina,O.P., Lukanidin,E.M., Molnar,J. and Georgiev,G.P. (1968) Structural organization of nuclear complexes containing DNA-like RNA. J. Mol. Biol., 33, 251-263.