-
1
-
-
84876804736
-
The global distribution and burden of dengue
-
Bhatt S, Gething PW, Brady OJ, Messina JP, Farlow AW, et al. (2013) The global distribution and burden of dengue. Nature 496: 504–507. doi: 10.1038/nature12060 23563266
-
(2013)
Nature
, vol.496
, pp. 504-507
-
-
Bhatt, S.1
Gething, P.W.2
Brady, O.J.3
Messina, J.P.4
Farlow, A.W.5
-
2
-
-
26944495290
-
Wrapping things up about virus RNA replication
-
Mackenzie J, (2005) Wrapping things up about virus RNA replication. Traffic 6: 967–977. 16190978
-
(2005)
Traffic
, vol.6
, pp. 967-977
-
-
Mackenzie, J.1
-
3
-
-
42349086670
-
Modification of intracellular membrane structures for virus replication
-
Miller S, Krijnse-Locker J, (2008) Modification of intracellular membrane structures for virus replication. Nat Rev Microbiol 6: 363–374. doi: 10.1038/nrmicro1890 18414501
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 363-374
-
-
Miller, S.1
Krijnse-Locker, J.2
-
4
-
-
5644258600
-
Viral RNA replication in association with cellular membranes
-
Salonen A, Ahola T, Kaariainen L, (2005) Viral RNA replication in association with cellular membranes. Curr Top Microbiol Immunol 285: 139–173. 15609503
-
(2005)
Curr Top Microbiol Immunol
, vol.285
, pp. 139-173
-
-
Salonen, A.1
Ahola, T.2
Kaariainen, L.3
-
5
-
-
0037013858
-
An RNA cap (nucleoside-2′-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization
-
Egloff MP, Benarroch D, Selisko B, Romette JL, Canard B, (2002) An RNA cap (nucleoside-2′-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization. EMBO J 21: 2757–2768. 12032088
-
(2002)
EMBO J
, vol.21
, pp. 2757-2768
-
-
Egloff, M.P.1
Benarroch, D.2
Selisko, B.3
Romette, J.L.4
Canard, B.5
-
6
-
-
84864912887
-
The viral RNA capping machinery as a target for antiviral drugs
-
Ferron F, Decroly E, Selisko B, Canard B, (2012) The viral RNA capping machinery as a target for antiviral drugs. Antiviral Res 96: 21–31. doi: 10.1016/j.antiviral.2012.07.007 22841701
-
(2012)
Antiviral Res
, vol.96
, pp. 21-31
-
-
Ferron, F.1
Decroly, E.2
Selisko, B.3
Canard, B.4
-
7
-
-
34247113349
-
Structure and function of flavivirus NS5 methyltransferase
-
Zhou Y, Ray D, Zhao Y, Dong H, Ren S, et al. (2007) Structure and function of flavivirus NS5 methyltransferase. J Virol 81: 3891–3903. 17267492
-
(2007)
J Virol
, vol.81
, pp. 3891-3903
-
-
Zhou, Y.1
Ray, D.2
Zhao, Y.3
Dong, H.4
Ren, S.5
-
8
-
-
33748669852
-
West Nile virus 5′-cap structure is formed by sequential guanine N-7 and ribose 2′-O methylations by nonstructural protein 5
-
Ray D, Shah A, Tilgner M, Guo Y, Zhao Y, et al. (2006) West Nile virus 5′-cap structure is formed by sequential guanine N-7 and ribose 2′-O methylations by nonstructural protein 5. J Virol 80: 8362–8370. 16912287
-
(2006)
J Virol
, vol.80
, pp. 8362-8370
-
-
Ray, D.1
Shah, A.2
Tilgner, M.3
Guo, Y.4
Zhao, Y.5
-
9
-
-
42449160175
-
West Nile virus methyltransferase catalyzes two methylations of the viral RNA cap through a substrate-repositioning mechanism
-
Dong H, Ren S, Zhang B, Zhou Y, Puig-Basagoiti F, et al. (2008) West Nile virus methyltransferase catalyzes two methylations of the viral RNA cap through a substrate-repositioning mechanism. J Virol 82: 4295–4307. doi: 10.1128/JVI.02202-07 18305027
-
(2008)
J Virol
, vol.82
, pp. 4295-4307
-
-
Dong, H.1
Ren, S.2
Zhang, B.3
Zhou, Y.4
Puig-Basagoiti, F.5
-
10
-
-
73249127604
-
The flavivirus NS5 protein is a true RNA guanylyltransferase that catalyzes a two-step reaction to form the RNA cap structure
-
Issur M, Geiss BJ, Bougie I, Picard-Jean F, Despins S, et al. (2009) The flavivirus NS5 protein is a true RNA guanylyltransferase that catalyzes a two-step reaction to form the RNA cap structure. RNA 15: 2340–2350. doi: 10.1261/rna.1609709 19850911
-
(2009)
RNA
, vol.15
, pp. 2340-2350
-
-
Issur, M.1
Geiss, B.J.2
Bougie, I.3
Picard-Jean, F.4
Despins, S.5
-
11
-
-
57749204973
-
Recognition of RNA cap in the Wesselsbron virus NS5 methyltransferase domain: implications for RNA-capping mechanisms in Flavivirus
-
Bollati M, Milani M, Mastrangelo E, Ricagno S, Tedeschi G, et al. (2009) Recognition of RNA cap in the Wesselsbron virus NS5 methyltransferase domain: implications for RNA-capping mechanisms in Flavivirus. J Mol Biol 385: 140–152. doi: 10.1016/j.jmb.2008.10.028 18976670
-
(2009)
J Mol Biol
, vol.385
, pp. 140-152
-
-
Bollati, M.1
Milani, M.2
Mastrangelo, E.3
Ricagno, S.4
Tedeschi, G.5
-
12
-
-
34249845069
-
Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5
-
Malet H, Egloff MP, Selisko B, Butcher RE, Wright PJ, et al. (2007) Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5. J Biol Chem 282: 10678–10689. 17287213
-
(2007)
J Biol Chem
, vol.282
, pp. 10678-10689
-
-
Malet, H.1
Egloff, M.P.2
Selisko, B.3
Butcher, R.E.4
Wright, P.J.5
-
13
-
-
34247610261
-
Crystal structure of the dengue virus RNA-dependent RNA polymerase catalytic domain at 1.85-angstrom resolution
-
Yap TL, Xu T, Chen YL, Malet H, Egloff MP, et al. (2007) Crystal structure of the dengue virus RNA-dependent RNA polymerase catalytic domain at 1.85-angstrom resolution. J Virol 81: 4753–4765. 17301146
-
(2007)
J Virol
, vol.81
, pp. 4753-4765
-
-
Yap, T.L.1
Xu, T.2
Chen, Y.L.3
Malet, H.4
Egloff, M.P.5
-
14
-
-
79954588648
-
Functional analysis of two cavities in flavivirus NS5 polymerase
-
Zou G, Chen YL, Dong H, Lim CC, Yap LJ, et al. (2011) Functional analysis of two cavities in flavivirus NS5 polymerase. J Biol Chem 286: 14362–14372. doi: 10.1074/jbc.M110.214189 21349834
-
(2011)
J Biol Chem
, vol.286
, pp. 14362-14372
-
-
Zou, G.1
Chen, Y.L.2
Dong, H.3
Lim, C.C.4
Yap, L.J.5
-
15
-
-
0037184036
-
The interdomain region of dengue NS5 protein that binds to the viral helicase NS3 contains independently functional importin beta 1 and importin alpha/beta-recognized nuclear localization signals
-
Brooks AJ, Johansson M, John AV, Xu Y, Jans DA, et al. (2002) The interdomain region of dengue NS5 protein that binds to the viral helicase NS3 contains independently functional importin beta 1 and importin alpha/beta-recognized nuclear localization signals. J Biol Chem 277: 36399–36407. 12105224
-
(2002)
J Biol Chem
, vol.277
, pp. 36399-36407
-
-
Brooks, A.J.1
Johansson, M.2
John, A.V.3
Xu, Y.4
Jans, D.A.5
-
16
-
-
0035061425
-
A small region of the dengue virus-encoded RNA-dependent RNA polymerase, NS5, confers interaction with both the nuclear transport receptor importin-beta and the viral helicase, NS3
-
Johansson M, Brooks AJ, Jans DA, Vasudevan SG, (2001) A small region of the dengue virus-encoded RNA-dependent RNA polymerase, NS5, confers interaction with both the nuclear transport receptor importin-beta and the viral helicase, NS3. J Gen Virol 82: 735–745. 11257177
-
(2001)
J Gen Virol
, vol.82
, pp. 735-745
-
-
Johansson, M.1
Brooks, A.J.2
Jans, D.A.3
Vasudevan, S.G.4
-
17
-
-
84922051539
-
-
Tay MYF, Saw WG, Zhao Y, Chan WKK, Singh D, et al. (2014) The C-terminal 50 amino acid residues of Dengue NS3 protein are important for NS3-NS5 interaction and viral replication J Biol Chem In press. doi: 10.1074/jbc.M114.607341 25488659
-
(2014)
The C-terminal 50 amino acid residues of Dengue NS3 protein are important for NS3-NS5 interaction and viral replication J Biol Chem In press
-
-
Tay, M.Y.F.1
Saw, W.G.2
Zhao, Y.3
Chan, W.K.K.4
Singh, D.5
-
18
-
-
79952427119
-
Appraising the roles of CBLL1 and the ubiquitin/proteasome system for flavivirus entry and replication
-
Fernandez-Garcia MD, Meertens L, Bonazzi M, Cossart P, Arenzana-Seisdedos F, et al. (2011) Appraising the roles of CBLL1 and the ubiquitin/proteasome system for flavivirus entry and replication. J Virol 85: 2980–2989. doi: 10.1128/JVI.02483-10 21191016
-
(2011)
J Virol
, vol.85
, pp. 2980-2989
-
-
Fernandez-Garcia, M.D.1
Meertens, L.2
Bonazzi, M.3
Cossart, P.4
Arenzana-Seisdedos, F.5
-
19
-
-
79952223157
-
NF90 binds the dengue virus RNA 3′ terminus and is a positive regulator of dengue virus replication
-
Gomila RC, Martin GW, Gehrke L, (2011) NF90 binds the dengue virus RNA 3′ terminus and is a positive regulator of dengue virus replication. PLoS One 6: e16687. doi: 10.1371/journal.pone.0016687 21386893
-
(2011)
PLoS One
, vol.6
, pp. 16687
-
-
Gomila, R.C.1
Martin, G.W.2
Gehrke, L.3
-
20
-
-
35348822495
-
Interaction between the cellular protein eEF1A and the 3′-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis
-
Davis WG, Blackwell JL, Shi PY, Brinton MA, (2007) Interaction between the cellular protein eEF1A and the 3′-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis. J Virol 81: 10172–10187. 17626087
-
(2007)
J Virol
, vol.81
, pp. 10172-10187
-
-
Davis, W.G.1
Blackwell, J.L.2
Shi, P.Y.3
Brinton, M.A.4
-
21
-
-
66149146738
-
NS5 of dengue virus mediates STAT2 binding and degradation
-
Ashour J, Laurent-Rolle M, Shi PY, Garcia-Sastre A, (2009) NS5 of dengue virus mediates STAT2 binding and degradation. J Virol 83: 5408–5418. doi: 10.1128/JVI.02188-08 19279106
-
(2009)
J Virol
, vol.83
, pp. 5408-5418
-
-
Ashour, J.1
Laurent-Rolle, M.2
Shi, P.Y.3
Garcia-Sastre, A.4
-
22
-
-
84881238516
-
Serotype-specific differences in dengue virus non-structural protein 5 nuclear localization
-
Hannemann H, Sung PY, Chiu HC, Yousuf A, Bird J, et al. (2013) Serotype-specific differences in dengue virus non-structural protein 5 nuclear localization. J Biol Chem 288: 22621–22635. doi: 10.1074/jbc.M113.481382 23770669
-
(2013)
J Biol Chem
, vol.288
, pp. 22621-22635
-
-
Hannemann, H.1
Sung, P.Y.2
Chiu, H.C.3
Yousuf, A.4
Bird, J.5
-
23
-
-
84884542325
-
Nuclear localization of dengue virus (DENV) 1–4 non-structural protein 5; protection against all 4 DENV serotypes by the inhibitor Ivermectin
-
Tay MY, Fraser JE, Chan WK, Moreland NJ, Rathore AP, et al. (2013) Nuclear localization of dengue virus (DENV) 1–4 non-structural protein 5; protection against all 4 DENV serotypes by the inhibitor Ivermectin. Antiviral Res 99: 301–306. doi: 10.1016/j.antiviral.2013.06.002 23769930
-
(2013)
Antiviral Res
, vol.99
, pp. 301-306
-
-
Tay, M.Y.1
Fraser, J.E.2
Chan, W.K.3
Moreland, N.J.4
Rathore, A.P.5
-
24
-
-
33947491301
-
Finding new medicines for flaviviral targets
-
Keller TH, Chen YL, Knox JE, Lim SP, Ma NL, et al. (2006) Finding new medicines for flaviviral targets. Novartis Found Symp 277: 102–114; discussion 114–109, 251–103. 17319157
-
(2006)
Novartis Found Symp
, vol.277
, pp. 102-114
-
-
Keller, T.H.1
Chen, Y.L.2
Knox, J.E.3
Lim, S.P.4
Ma, N.L.5
-
25
-
-
73249137120
-
N-sulfonylanthranilic acid derivatives as allosteric inhibitors of dengue viral RNA-dependent RNA polymerase
-
Yin Z, Chen YL, Kondreddi RR, Chan WL, Wang G, et al. (2009) N-sulfonylanthranilic acid derivatives as allosteric inhibitors of dengue viral RNA-dependent RNA polymerase. J Med Chem 52: 7934–7937. doi: 10.1021/jm901044z 20014868
-
(2009)
J Med Chem
, vol.52
, pp. 7934-7937
-
-
Yin, Z.1
Chen, Y.L.2
Kondreddi, R.R.3
Chan, W.L.4
Wang, G.5
-
26
-
-
73949141554
-
An adenosine nucleoside inhibitor of dengue virus
-
Yin Z, Chen YL, Schul W, Wang QY, Gu F, et al. (2009) An adenosine nucleoside inhibitor of dengue virus. Proc Natl Acad Sci U S A 106: 20435–20439. doi: 10.1073/pnas.0907010106 19918064
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 20435-20439
-
-
Yin, Z.1
Chen, Y.L.2
Schul, W.3
Wang, Q.Y.4
Gu, F.5
-
27
-
-
84867236960
-
Structural biology of dengue virus enzymes: towards rational design of therapeutics
-
Noble CG, Shi PY, (2012) Structural biology of dengue virus enzymes: towards rational design of therapeutics. Antiviral Res 96: 115–126. doi: 10.1016/j.antiviral.2012.09.007 22995600
-
(2012)
Antiviral Res
, vol.96
, pp. 115-126
-
-
Noble, C.G.1
Shi, P.Y.2
-
28
-
-
84885567750
-
Ten years of dengue drug discovery: progress and prospects
-
Lim SP, Wang QY, Noble CG, Chen YL, Dong H, et al. (2013) Ten years of dengue drug discovery: progress and prospects. Antiviral Res 100: 500–519. doi: 10.1016/j.antiviral.2013.09.013 24076358
-
(2013)
Antiviral Res
, vol.100
, pp. 500-519
-
-
Lim, S.P.1
Wang, Q.Y.2
Noble, C.G.3
Chen, Y.L.4
Dong, H.5
-
29
-
-
84864436647
-
Dengue virus nonstructural protein 5 adopts multiple conformations in solution
-
Bussetta C, Choi KH, (2012) Dengue virus nonstructural protein 5 adopts multiple conformations in solution. Biochemistry 51: 5921–5931. 22757685
-
(2012)
Biochemistry
, vol.51
, pp. 5921-5931
-
-
Bussetta, C.1
Choi, K.H.2
-
30
-
-
33745962422
-
Comparative mechanistic studies of de novo RNA synthesis by flavivirus RNA-dependent RNA polymerases
-
Selisko B, Dutartre H, Guillemot JC, Debarnot C, Benarroch D, et al. (2006) Comparative mechanistic studies of de novo RNA synthesis by flavivirus RNA-dependent RNA polymerases. Virology 351: 145–158. 16631221
-
(2006)
Virology
, vol.351
, pp. 145-158
-
-
Selisko, B.1
Dutartre, H.2
Guillemot, J.C.3
Debarnot, C.4
Benarroch, D.5
-
31
-
-
84883381606
-
Crystal Structure of the full-length Japanese encephalitis virus NS5 reveals a conserved methyltransferase-polymerase interface
-
Lu G, Gong P, (2013) Crystal Structure of the full-length Japanese encephalitis virus NS5 reveals a conserved methyltransferase-polymerase interface. PLoS Pathog 9: e1003549. doi: 10.1371/journal.ppat.1003549 23950717
-
(2013)
PLoS Pathog
, vol.9
, pp. 1003549
-
-
Lu, G.1
Gong, P.2
-
32
-
-
84886647090
-
A crystal structure of the dengue virus non-structural protein 5 (NS5) polymerase delineates interdomain amino acid residues that enhance its thermostability and de novo initiation activities
-
Lim SP, Koh JH, Seh CC, Liew CW, Davidson AD, et al. (2013) A crystal structure of the dengue virus non-structural protein 5 (NS5) polymerase delineates interdomain amino acid residues that enhance its thermostability and de novo initiation activities. J Biol Chem 288: 31105–31114. doi: 10.1074/jbc.M113.508606 24025331
-
(2013)
J Biol Chem
, vol.288
, pp. 31105-31114
-
-
Lim, S.P.1
Koh, J.H.2
Seh, C.C.3
Liew, C.W.4
Davidson, A.D.5
-
33
-
-
84908163313
-
The methyltransferase domain of dengue virus protein NS5 ensures efficient RNA synthesis initiation and elongation by the polymerase domain
-
Potisopon S, Priet S, Collet A, Decroly E, Canard B, et al. (2014) The methyltransferase domain of dengue virus protein NS5 ensures efficient RNA synthesis initiation and elongation by the polymerase domain. Nucleic Acids Res.
-
(2014)
Nucleic Acids Res
-
-
Potisopon, S.1
Priet, S.2
Collet, A.3
Decroly, E.4
Canard, B.5
-
34
-
-
0025085655
-
Ligation-independent cloning of PCR products (LIC-PCR)
-
Aslanidis C, de Jong PJ, (1990) Ligation-independent cloning of PCR products (LIC-PCR). Nucleic Acids Res 18: 6069–6074. 2235490
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6069-6074
-
-
Aslanidis, C.1
de Jong, P.J.2
-
35
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
(1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50: 760–763. 15299374
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
36
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews BW, (1968) Solvent content of protein crystals. J Mol Biol 33: 491–497. 5700707
-
(1968)
J Mol Biol
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
38
-
-
79953188722
-
Small molecule inhibitors that selectively block dengue virus methyltransferase
-
Lim SP, Sonntag LS, Noble C, Nilar SH, Ng RH, et al. (2011) Small molecule inhibitors that selectively block dengue virus methyltransferase. J Biol Chem 286: 6233–6240. doi: 10.1074/jbc.M110.179184 21147775
-
(2011)
J Biol Chem
, vol.286
, pp. 6233-6240
-
-
Lim, S.P.1
Sonntag, L.S.2
Noble, C.3
Nilar, S.H.4
Ng, R.H.5
-
39
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project N (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50: 760–763. 15299374
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
40
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213–221. doi: 10.1107/S0907444909052925 20124702
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
-
41
-
-
13244281317
-
Coot: model-building tools for molecular graphics
-
Emsley P, Cowtan K, (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60: 2126–2132. 15572765
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
42
-
-
74549178560
-
MolProbity: all-atom structure validation for macromolecular crystallography
-
Chen VB, Arendall WB, 3rdHeadd JJ, Keedy DA, Immormino RM, et al. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66: 12–21. doi: 10.1107/S0907444909042073 20057044
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
-
43
-
-
84875308108
-
The PyMOL Molecular Graphics System
-
Schrödinger L (2010) The PyMOL Molecular Graphics System, Version 1.5.0.4
-
(2010)
Version 1.5
, vol.0
, pp. 4
-
-
Schrödinger, L.1
-
44
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E, Henrick K, (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372: 774–797. 17681537
-
(2007)
J Mol Biol
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
45
-
-
0036888353
-
Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50
-
Hayward S, Lee RA, (2002) Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50. J Mol Graph Model 21: 181–183. 12463636
-
(2002)
J Mol Graph Model
, vol.21
, pp. 181-183
-
-
Hayward, S.1
Lee, R.A.2
-
46
-
-
62149090281
-
HD desktop: an integrated platform for the analysis and visualization of H/D exchange data
-
Pascal BD, Chalmers MJ, Busby SA, Griffin PR, (2009) HD desktop: an integrated platform for the analysis and visualization of H/D exchange data. J Am Soc Mass Spectrom 20: 601–610. doi: 10.1016/j.jasms.2008.11.019 19135386
-
(2009)
J Am Soc Mass Spectrom
, vol.20
, pp. 601-610
-
-
Pascal, B.D.1
Chalmers, M.J.2
Busby, S.A.3
Griffin, P.R.4
-
47
-
-
84934438217
-
Cis-acting ribozymes for the production of RNA in vitro transcripts with defined 5′ and 3′ ends
-
Avis JM, Conn GL, Walker SC, (2012) Cis-acting ribozymes for the production of RNA in vitro transcripts with defined 5′ and 3′ ends. Methods Mol Biol 941: 83–98. doi: 10.1007/978-1-62703-113-4_7 23065555
-
(2012)
Methods Mol Biol
, vol.941
, pp. 83-98
-
-
Avis, J.M.1
Conn, G.L.2
Walker, S.C.3
-
48
-
-
56349149403
-
A scintillation proximity assay for dengue virus NS5 2′-O-methyltransferase-kinetic and inhibition analyses
-
Lim SP, Wen D, Yap TL, Yan CK, Lescar J, et al. (2008) A scintillation proximity assay for dengue virus NS5 2′-O-methyltransferase-kinetic and inhibition analyses. Antiviral Res 80: 360–369. doi: 10.1016/j.antiviral.2008.08.005 18809436
-
(2008)
Antiviral Res
, vol.80
, pp. 360-369
-
-
Lim, S.P.1
Wen, D.2
Yap, T.L.3
Yan, C.K.4
Lescar, J.5
-
49
-
-
77951984630
-
Inhibition of dengue virus polymerase by blocking of the RNA tunnel
-
Niyomrattanakit P, Chen YL, Dong H, Yin Z, Qing M, et al. (2010) Inhibition of dengue virus polymerase by blocking of the RNA tunnel. J Virol 84: 5678–5686. doi: 10.1128/JVI.02451-09 20237086
-
(2010)
J Virol
, vol.84
, pp. 5678-5686
-
-
Niyomrattanakit, P.1
Chen, Y.L.2
Dong, H.3
Yin, Z.4
Qing, M.5
-
50
-
-
0036842233
-
Biochemical characterization of rhinovirus RNA-dependent RNA polymerase
-
Hung M, Gibbs CS, Tsiang M, (2002) Biochemical characterization of rhinovirus RNA-dependent RNA polymerase. Antiviral Res 56: 99–114. 12367717
-
(2002)
Antiviral Res
, vol.56
, pp. 99-114
-
-
Hung, M.1
Gibbs, C.S.2
Tsiang, M.3
-
51
-
-
26944440884
-
Serotype-specific detection of dengue viruses in a fourplex real-time reverse transcriptase PCR assay
-
Johnson BW, Russell BJ, Lanciotti RS, (2005) Serotype-specific detection of dengue viruses in a fourplex real-time reverse transcriptase PCR assay. J Clin Microbiol 43: 4977–4983. 16207951
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4977-4983
-
-
Johnson, B.W.1
Russell, B.J.2
Lanciotti, R.S.3
-
52
-
-
84855223593
-
Monoclonal antibodies against dengue NS2B and NS3 proteins for the study of protein interactions in the flaviviral replication complex
-
Moreland NJ, Tay MY, Lim E, Rathore AP, Lim AP, et al. (2012) Monoclonal antibodies against dengue NS2B and NS3 proteins for the study of protein interactions in the flaviviral replication complex. J Virol Methods 179: 97–103. doi: 10.1016/j.jviromet.2011.10.006 22040846
-
(2012)
J Virol Methods
, vol.179
, pp. 97-103
-
-
Moreland, N.J.1
Tay, M.Y.2
Lim, E.3
Rathore, A.P.4
Lim, A.P.5
-
53
-
-
4143116991
-
A structural basis for the inhibition of the NS5 dengue virus mRNA 2′-O-methyltransferase domain by ribavirin 5′-triphosphate
-
Benarroch D, Egloff MP, Mulard L, Guerreiro C, Romette JL, et al. (2004) A structural basis for the inhibition of the NS5 dengue virus mRNA 2′-O-methyltransferase domain by ribavirin 5′-triphosphate. J Biol Chem 279: 35638–35643. 15152003
-
(2004)
J Biol Chem
, vol.279
, pp. 35638-35643
-
-
Benarroch, D.1
Egloff, M.P.2
Mulard, L.3
Guerreiro, C.4
Romette, J.L.5
-
54
-
-
34548148632
-
Structural and functional analysis of methylation and 5′-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5
-
Egloff MP, Decroly E, Malet H, Selisko B, Benarroch D, et al. (2007) Structural and functional analysis of methylation and 5′-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J Mol Biol 372: 723–736. 17686489
-
(2007)
J Mol Biol
, vol.372
, pp. 723-736
-
-
Egloff, M.P.1
Decroly, E.2
Malet, H.3
Selisko, B.4
Benarroch, D.5
-
55
-
-
79958098689
-
The F1 motif of dengue virus polymerase NS5 is involved in promoter-dependent RNA synthesis
-
Iglesias NG, Filomatori CV, Gamarnik AV, (2011) The F1 motif of dengue virus polymerase NS5 is involved in promoter-dependent RNA synthesis. J Virol 85: 5745–5756. doi: 10.1128/JVI.02343-10 21471248
-
(2011)
J Virol
, vol.85
, pp. 5745-5756
-
-
Iglesias, N.G.1
Filomatori, C.V.2
Gamarnik, A.V.3
-
56
-
-
79951887389
-
Hydrogen exchange mass spectrometry for studying protein structure and dynamics
-
Konermann L, Pan J, Liu YH, (2011) Hydrogen exchange mass spectrometry for studying protein structure and dynamics. Chem Soc Rev 40: 1224–1234. doi: 10.1039/c0cs00113a 21173980
-
(2011)
Chem Soc Rev
, vol.40
, pp. 1224-1234
-
-
Konermann, L.1
Pan, J.2
Liu, Y.H.3
-
57
-
-
77954956665
-
Structure and functionality in flavivirus NS-proteins: perspectives for drug design
-
Bollati M, Alvarez K, Assenberg R, Baronti C, Canard B, et al. (2010) Structure and functionality in flavivirus NS-proteins: perspectives for drug design. Antiviral Res 87: 125–148. doi: 10.1016/j.antiviral.2009.11.009 19945487
-
(2010)
Antiviral Res
, vol.87
, pp. 125-148
-
-
Bollati, M.1
Alvarez, K.2
Assenberg, R.3
Baronti, C.4
Canard, B.5
-
58
-
-
76149083241
-
Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange
-
Zhang X, Chien EY, Chalmers MJ, Pascal BD, Gatchalian J, et al. (2010) Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange. Anal Chem 82: 1100–1108. doi: 10.1021/ac902484p 20058880
-
(2010)
Anal Chem
, vol.82
, pp. 1100-1108
-
-
Zhang, X.1
Chien, E.Y.2
Chalmers, M.J.3
Pascal, B.D.4
Gatchalian, J.5
-
59
-
-
84926440328
-
High resolution HDX-MS reveals distinct mechanisms of RNA recognition and activation by RIG-I and MDA5
-
Zheng J, Yong HY, Panutdaporn N, Liu C, Tang K, et al. (2014) High resolution HDX-MS reveals distinct mechanisms of RNA recognition and activation by RIG-I and MDA5. Nucleic Acids Res Accepted.
-
(2014)
Nucleic Acids Res Accepted
-
-
Zheng, J.1
Yong, H.Y.2
Panutdaporn, N.3
Liu, C.4
Tang, K.5
-
60
-
-
84881633926
-
An interaction between the methyltransferase and RNA dependent RNA polymerase domains of the West Nile virus NS5 protein
-
Tan CS, Hobson-Peters JM, Stoermer MJ, Fairlie DP, Khromykh AA, et al. (2013) An interaction between the methyltransferase and RNA dependent RNA polymerase domains of the West Nile virus NS5 protein. J Gen Virol 94: 1961–1971. doi: 10.1099/vir.0.054395-0 23740481
-
(2013)
J Gen Virol
, vol.94
, pp. 1961-1971
-
-
Tan, C.S.1
Hobson-Peters, J.M.2
Stoermer, M.J.3
Fairlie, D.P.4
Khromykh, A.A.5
-
61
-
-
78650055985
-
3(10) helices in channels and other membrane proteins
-
Vieira-Pires RS, Morais-Cabral JH, (2010) 3(10) helices in channels and other membrane proteins. J Gen Physiol 136: 585–592. doi: 10.1085/jgp.201010508 21115694
-
(2010)
J Gen Physiol
, vol.136
, pp. 585-592
-
-
Vieira-Pires, R.S.1
Morais-Cabral, J.H.2
-
62
-
-
0030028728
-
Principles of protein-protein interactions
-
Jones S, Thornton JM, (1996) Principles of protein-protein interactions. Proc Natl Acad Sci U S A 93: 13–20. 8552589
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 13-20
-
-
Jones, S.1
Thornton, J.M.2
-
63
-
-
0035896024
-
ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
-
Armon A, Graur D, Ben-Tal N, (2001) ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information. J Mol Biol 307: 447–463. 11243830
-
(2001)
J Mol Biol
, vol.307
, pp. 447-463
-
-
Armon, A.1
Graur, D.2
Ben-Tal, N.3
-
64
-
-
84901767814
-
The interface between methyltransferase and polymerase of NS5 is essential for flavivirus replication
-
Li XD, Shan C, Deng CL, Ye HQ, Shi PY, et al. (2014) The interface between methyltransferase and polymerase of NS5 is essential for flavivirus replication. PLoS Negl Trop Dis 8: e2891. doi: 10.1371/journal.pntd.0002891 24852307
-
(2014)
PLoS Negl Trop Dis
, vol.8
, pp. 2891
-
-
Li, X.D.1
Shan, C.2
Deng, C.L.3
Ye, H.Q.4
Shi, P.Y.5
-
65
-
-
84926440327
-
Perturbation in the conserved methyltransferase-polymerase interface of flavivirus NS5 differentially affects polymerase initiation and elongation
-
Wu J, Lu G, Zhang B, Gong P, (2014) Perturbation in the conserved methyltransferase-polymerase interface of flavivirus NS5 differentially affects polymerase initiation and elongation. J Virol.
-
(2014)
J Virol
-
-
Wu, J.1
Lu, G.2
Zhang, B.3
Gong, P.4
-
66
-
-
84900338393
-
Functional interplay among the flavivirus NS3 protease, helicase, and cofactors
-
Li K, Phoo WW, Luo D, (2014) Functional interplay among the flavivirus NS3 protease, helicase, and cofactors. Virologica Sinica: 1–12. doi: 10.1007/s12250-014-3437-7 24470264
-
(2014)
Virologica Sinica
, pp. 1-12
-
-
Li, K.1
Phoo, W.W.2
Luo, D.3
-
68
-
-
77953306294
-
Flexibility between the protease and helicase domains of the dengue virus NS3 protein conferred by the linker region and its functional implications
-
Luo D, Wei N, Doan DN, Paradkar PN, Chong Y, et al. (2010) Flexibility between the protease and helicase domains of the dengue virus NS3 protein conferred by the linker region and its functional implications. Journal of biological chemistry 285: 18817–18827. doi: 10.1074/jbc.M109.090936 20375022
-
(2010)
Journal of biological chemistry
, vol.285
, pp. 18817-18827
-
-
Luo, D.1
Wei, N.2
Doan, D.N.3
Paradkar, P.N.4
Chong, Y.5
-
69
-
-
72849147739
-
Crystal structure of a novel conformational state of the flavivirus NS3 protein: implications for polyprotein processing and viral replication
-
Assenberg R, Mastrangelo E, Walter TS, Verma A, Milani M, et al. (2009) Crystal structure of a novel conformational state of the flavivirus NS3 protein: implications for polyprotein processing and viral replication. J Virol 83: 12895–12906. doi: 10.1128/JVI.00942-09 19793813
-
(2009)
J Virol
, vol.83
, pp. 12895-12906
-
-
Assenberg, R.1
Mastrangelo, E.2
Walter, T.S.3
Verma, A.4
Milani, M.5
-
70
-
-
37349023165
-
Crystal structure of the NS3 protease-helicase from dengue virus
-
Luo D, Xu T, Hunke C, Grüber G, Vasudevan SG, et al. (2008) Crystal structure of the NS3 protease-helicase from dengue virus. Journal of virology 82: 173–183. 17942558
-
(2008)
Journal of virology
, vol.82
, pp. 173-183
-
-
Luo, D.1
Xu, T.2
Hunke, C.3
Grüber, G.4
Vasudevan, S.G.5
-
71
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14: 1188–1190. 15173120
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
72
-
-
84908177059
-
Regulation of Flavivirus RNA synthesis and replication
-
Selisko B, Wang C, Harris E, Canard B, (2014) Regulation of Flavivirus RNA synthesis and replication. Curr Opin Virol 9C: 74–83.
-
(2014)
Curr Opin Virol
, vol.9C
, pp. 74-83
-
-
Selisko, B.1
Wang, C.2
Harris, E.3
Canard, B.4
|