메뉴 건너뛰기




Volumn 941, Issue , 2012, Pages 83-98

Cis-acting ribozymes for the production of RNA in vitro transcripts with defined 5′ and 3′ ends

Author keywords

Hammerhead; HDV; In vitro transcription; Ribozyme; RNA; T7 RNA polymerase

Indexed keywords

CIS ACTING ELEMENT; DNA; RIBOZYME; RNA;

EID: 84934438217     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-113-4_7     Document Type: Article
Times cited : (30)

References (24)
  • 1
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan JF, Uhlenbeck OC. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 1989;180:51-62.
    • (1989) Methods Enzymol , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 2
    • 0027991544 scopus 로고
    • In vitro transcription: Preparative RNA yields in analytical scale reactions
    • Pokrovskaya ID, Gurevich VV. In vitro transcription: preparative RNA yields in analytical scale reactions. Anal Biochem. 1994;220:420-3.
    • (1994) Anal Biochem , vol.220 , pp. 420-423
    • Pokrovskaya, I.D.1    Gurevich, V.V.2
  • 3
    • 0032916514 scopus 로고    scopus 로고
    • More mistakes by T7 RNA polymerase at the 5ends of in vitro-transcribed RNAs
    • Helm M, Brule H, Giege R, Florentz C. More mistakes by T7 RNA polymerase at the 5ends of in vitro-transcribed RNAs. RNA. 1999;5:618-21.
    • (1999) RNA , vol.5 , pp. 618-621
    • Helm, M.1    Brule, H.2    Giege, R.3    Florentz, C.4
  • 4
    • 0031686310 scopus 로고    scopus 로고
    • T7 RNA polymerase produces 5end heterogeneity during in vitro transcription from certain templates
    • Pleiss JA, Derrick ML, Uhlenbeck OC. T7 RNA polymerase produces 5end heterogeneity during in vitro transcription from certain templates. RNA. 1998;4:1313-7.
    • (1998) RNA , vol.4 , pp. 1313-1317
    • Pleiss, J.A.1    Derrick, M.L.2    Uhlenbeck, O.C.3
  • 5
    • 0027214234 scopus 로고
    • Two base pairs at 9 and 8 distinguish between the bacteriophage T7 and SP6 promoters
    • Lee SS, Kang C. Two base pairs at 9 and 8 distinguish between the bacteriophage T7 and SP6 promoters. J Biol Chem. 1993;268: 19299-304.
    • (1993) J Biol Chem , vol.268 , pp. 19299-19304
    • Lee, S.S.1    Kang, C.2
  • 6
    • 18544392413 scopus 로고    scopus 로고
    • Efficient incorporation of CoA NAD and FAD into RNA by in vitro transcription
    • Huang F. Efficient incorporation of CoA, NAD and FAD into RNA by in vitro transcription. Nucleic Acids Res. 2003;31:e8.
    • (2003) Nucleic Acids Res , vol.31
    • Huang, F.1
  • 7
    • 0023953676 scopus 로고
    • Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro
    • Sampson JR, Uhlenbeck OC. Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc Natl Acad Sci USA. 1988;85: 1033-7.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 1033-1037
    • Sampson, J.R.1    Uhlenbeck, O.C.2
  • 8
    • 0032827799 scopus 로고    scopus 로고
    • A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase
    • Kao C, Zheng M, Rudisser S. A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA. 1999;5:1268-72.
    • (1999) RNA , vol.5 , pp. 1268-1272
    • Kao, C.1    Zheng, M.2    Rudisser, S.3
  • 10
    • 1342269713 scopus 로고    scopus 로고
    • Superior 5homogeneity of RNA from ATP-initiated transcription under the T7 phi 2.5 promoter
    • Coleman TM, Wang G, Huang F. Superior 5homogeneity of RNA from ATP-initiated transcription under the T7 phi 2.5 promoter. Nucleic Acids Res. 2004;32:e14.
    • (2004) Nucleic Acids Res , vol.32
    • Coleman, T.M.1    Wang, G.2    Huang, F.3
  • 11
    • 0023650861 scopus 로고
    • Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H
    • Inoue H, Hayase Y, Iwai S, Ohtsuka E. Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H. FEBS Lett. 1987;215:327-30.
    • (1987) FEBS Lett , vol.215 , pp. 327-330
    • Inoue, H.1    Hayase, Y.2    Iwai, S.3    Ohtsuka, E.4
  • 12
    • 0029845145 scopus 로고    scopus 로고
    • RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation
    • Lapham J, Crothers DM. RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation. RNA. 1996;2: 289-96.
    • (1996) RNA , vol.2 , pp. 289-296
    • Lapham, J.1    Crothers, D.M.2
  • 13
    • 0029879548 scopus 로고    scopus 로고
    • Synthesis of small RNA transcripts with discrete 5and 3ends
    • Ziehler WA, Engelke DR. Synthesis of small RNA transcripts with discrete 5and 3ends. Biotechniques. 1996;20:622-4.
    • (1996) Biotechniques , vol.20 , pp. 622-624
    • Ziehler, W.A.1    Engelke, D.R.2
  • 14
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro SW, Joyce GF. A general purpose RNA-cleaving DNA enzyme. Proc Natl Acad Sci USA. 1997;94:4262-6.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 15
    • 0026594927 scopus 로고
    • Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis delta virus RNA sequence
    • Perrotta AT, Been MD. Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis delta virus RNA sequence. Biochemistry. 1992;31:16-21.
    • (1992) Biochemistry , vol.31 , pp. 16-21
    • Perrotta, A.T.1    Been, M.D.2
  • 16
    • 0029919746 scopus 로고    scopus 로고
    • Use of cisand trans-ribozymes to remove 5and 3heterogeneities from milligrams of in vitro transcribed RNA
    • Ferre-DAmare AR, Doudna JA. Use of cisand trans-ribozymes to remove 5and 3heterogeneities from milligrams of in vitro transcribed RNA. Nucleic Acids Res. 1996;24: 977-8.
    • (1996) Nucleic Acids Res , vol.24 , pp. 977-978
    • Ferre-Damare, A.R.1    Doudna, J.A.2
  • 17
    • 0017757667 scopus 로고
    • 3-Phosphatase activity in T4 polynucleotide kinase
    • Cameron V, Uhlenbeck OC. 3-Phosphatase activity in T4 polynucleotide kinase. Biochemistry. 1977;16:5120-6.
    • (1977) Biochemistry , vol.16 , pp. 5120-5126
    • Cameron, V.1    Uhlenbeck, O.C.2
  • 18
    • 0025027518 scopus 로고
    • High ionic strength promotes selective 3-phosphatase activity of T4 polynucleotide kinase
    • Povirk LF, Steighner RJ. High ionic strength promotes selective 3-phosphatase activity of T4 polynucleotide kinase. Biotechniques. 1990;9:562.
    • (1990) Biotechniques , vol.9 , pp. 562
    • Povirk, L.F.1    Steighner, R.J.2
  • 19
    • 0042161808 scopus 로고    scopus 로고
    • General plasmids for producing RNA in vitro transcripts with homogeneous ends
    • Walker SC, Avis JM, Conn GL. General plasmids for producing RNA in vitro transcripts with homogeneous ends. Nucleic Acids Res. 2003;31:e82.
    • (2003) Nucleic Acids Res , vol.31
    • Walker, S.C.1    Avis, J.M.2    Conn, G.L.3
  • 20
    • 0022423551 scopus 로고
    • A novel transcription property of SP6 and T7 RNA polymerases: Dependence on template structure
    • Schenborn ET, Mierendorf Jr RC. A novel transcription property of SP6 and T7 RNA polymerases: dependence on template structure. Nucleic Acids Res. 1985;13:6223-36.
    • (1985) Nucleic Acids Res , vol.13 , pp. 6223-6236
    • Schenborn, E.T.1    Mierendorf Jr., R.C.2
  • 21
    • 0030939002 scopus 로고    scopus 로고
    • The structure, function and application of the hammerhead ribozyme
    • Birikh KR, Heaton PA, Eckstein F. The structure, function and application of the hammerhead ribozyme. Eur J Biochem. 1997;245:1-16.
    • (1997) Eur J Biochem , vol.245 , pp. 1-16
    • Birikh, K.R.1    Heaton, P.A.2    Eckstein, F.3
  • 22
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003;31:3406-15.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 24
    • 0025082875 scopus 로고
    • Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions
    • Rosenstein SP, Been MD. Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions. Biochemistry. 1990;29:8011-6.
    • (1990) Biochemistry , vol.29 , pp. 8011-8016
    • Rosenstein, S.P.1    Been, M.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.