-
2
-
-
0003880161
-
-
New York: Addison-Wesley
-
Alberts B, Bray D, Lewis J, Raff M, Roberts K, Watson J. Molecular Biology of the Cell. New York: Addison-Wesley; 1994.
-
(1994)
Molecular Biology of the Cell
-
-
Alberts, B.1
Bray, D.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Watson, J.6
-
4
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J Jr., Lu L, Lewis DB, Tibshirani R, Sherock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, Staudt LM. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000;403:503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson, J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
5
-
-
0037187833
-
A mixture model approach for the analysis of microarray gene expression data
-
Allison DB, Gadbury GL, Heo M, Fernndez JR, Lee CK, Prolla TA, Weindruch R. A mixture model approach for the analysis of microarray gene expression data. Comput Stat Data Anal 2002;39:1-20.
-
(2002)
Comput Stat Data Anal
, vol.39
, pp. 1-20
-
-
Allison, D.B.1
Gadbury, G.L.2
Heo, M.3
Fernndez, J.R.4
Lee, C.K.5
Prolla, T.A.6
Weindruch, R.7
-
6
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci U S A 1999;96:6745-6750.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
7
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
10101d2-1010106
-
Alter O, Brown PO, Botstein D. Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci U S A 2000;97:10101d2-1010106.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
8
-
-
84926398239
-
Statistical analysis of microchip data. Unpublished material presented at the Joint Statistical Meetings
-
Baltimore, MD
-
Amaratunga D, Cabrera J. Statistical analysis of microchip data. Unpublished material presented at the Joint Statistical Meetings. Baltimore, MD; 1999.
-
(1999)
-
-
Amaratunga, D.1
Cabrera, J.2
-
9
-
-
84926405169
-
Outlier resistance, standardization and modeling issues for DNA microarray data
-
Fernholz LT, Morgenthaler S, Stahel W, editors, Basel, Switzerland: Birkhauser Verlag
-
Amaratunga D, Cabrera J. Outlier resistance, standardization and modeling issues for DNA microarray data. In: Fernholz LT, Morgenthaler S, Stahel W, editors. Statistics and Genetics for the Environmental Sciences. Basel, Switzerland: Birkhauser Verlag; 2001a.
-
(2001)
Statistics and Genetics for the Environmental Sciences
-
-
Amaratunga, D.1
Cabrera, J.2
-
10
-
-
1542784649
-
Statistical analysis of viral microchip data
-
Amaratunga D, Cabrera J. Statistical analysis of viral microchip data. J Am Stat Assoc 2001b;96:1161-1170.
-
(2001)
J Am Stat Assoc
, vol.96
, pp. 1161-1170
-
-
Amaratunga, D.1
Cabrera, J.2
-
11
-
-
1542378394
-
Mining data to find subsets of high activity
-
Amaratunga D, Cabrera J. Mining data to find subsets of high activity. J Stat Plann Infer 2003a;122:23-41.
-
(2003)
J Stat Plann Infer
, vol.122
, pp. 23-41
-
-
Amaratunga, D.1
Cabrera, J.2
-
12
-
-
84926405168
-
Methods for assessing the quality of DNA microarrays
-
Unpublished
-
Amaratunga D, Cabrera J. Methods for assessing the quality of DNA microarrays; 2003b, Unpublished.
-
(2003)
-
-
Amaratunga, D.1
Cabrera, J.2
-
13
-
-
84926402227
-
A robust Bayes analysis of DNA microarray data
-
Unpublished
-
Amaratunga D, Cabrera J. A robust Bayes analysis of DNA microarray data; 2003c, Unpublished.
-
(2003)
-
-
Amaratunga, D.1
Cabrera, J.2
-
14
-
-
77953896479
-
A conditional t suite of tests for identifying differentially expressed genes in a DNA microarray experiment with little replication
-
Amaratunga D, Cabrera J. A conditional t suite of tests for identifying differentially expressed genes in a DNA microarray experiment with little replication. Stat Biopharm Res 2009;1:26-38.
-
(2009)
Stat Biopharm Res
, vol.1
, pp. 26-38
-
-
Amaratunga, D.1
Cabrera, J.2
-
16
-
-
84897709974
-
Ensemble classifiers
-
Fourdrinier D, Marchand E, Rukhin AL, editors
-
Amaratunga D, Cabrera J, Cherkas Y, Lee YS. Ensemble classifiers. In: Fourdrinier D, Marchand E, Rukhin AL, editors. Beachwood, Ohio, USA: IMS Collection Volume 8:Contemporary Developments in Bayesian Analysis and Statistical Decision Theory: A Festschrift for William E. Strawderman; 2012.
-
(2012)
Beachwood, Ohio, USA: IMS Collection Volume 8:Contemporary Developments in Bayesian Analysis and Statistical Decision Theory: A Festschrift for William E. Strawderman
-
-
Amaratunga, D.1
Cabrera, J.2
Cherkas, Y.3
Lee, Y.S.4
-
19
-
-
0037076322
-
Selection bias in gene extraction on basis of microarray gene expression data
-
Ambroise C, McLachlan GJ. Selection bias in gene extraction on basis of microarray gene expression data. Proc Natl Acad Sci U S A 2002;99:6562-6566.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6562-6566
-
-
Ambroise, C.1
McLachlan, G.J.2
-
20
-
-
0037109690
-
Toward optimized antibody microarrays: a comparison of current microarray support materials
-
Angenendt P, Glokler J, Murphy D, Lehrach H, Cahill DJ. Toward optimized antibody microarrays: a comparison of current microarray support materials. Anal Biochem 2002;309:253-260.
-
(2002)
Anal Biochem
, vol.309
, pp. 253-260
-
-
Angenendt, P.1
Glokler, J.2
Murphy, D.3
Lehrach, H.4
Cahill, D.J.5
-
21
-
-
84946632720
-
The examination and analysis of residuals
-
Anscombe F, Tukey JW. The examination and analysis of residuals. Technometrics 1963; 5:141-160.
-
Technometrics
, vol.1963
, pp. 141-160
-
-
Anscombe, F.1
Tukey, J.W.2
-
22
-
-
0000835612
-
The grand tour: a tool for viewing multidimensional data
-
Asimov D. The grand tour: a tool for viewing multidimensional data. SIAM J Sci Stat Comput 1985;6:128-143.
-
(1985)
SIAM J Sci Stat Comput
, vol.6
, pp. 128-143
-
-
Asimov, D.1
-
23
-
-
0037225727
-
Contrast normalization of oligonucleotide arrays
-
Astrand M. Contrast normalization of oligonucleotide arrays. J Comput Biol 2003; 10:95-102.
-
(2003)
J Comput Biol
, vol.10
, pp. 95-102
-
-
Astrand, M.1
-
24
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes
-
Baldi P, Long AD. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 2001;7:509-519.
-
(2001)
Bioinformatics
, vol.7
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
25
-
-
0027453616
-
Model-based Gaussian and non-Gaussian clustering
-
Banfield JD, Raftery AE. Model-based Gaussian and non-Gaussian clustering. Biometrics 1993;49:803-821.
-
(1993)
Biometrics
, vol.49
, pp. 803-821
-
-
Banfield, J.D.1
Raftery, A.E.2
-
26
-
-
0036100113
-
Context-specific Bayesian clustering for gene expression data
-
Barash Y, Friedman N. Context-specific Bayesian clustering for gene expression data. J Comput Biol 2002;9:169-191.
-
(2002)
J Comput Biol
, vol.9
, pp. 169-191
-
-
Barash, Y.1
Friedman, N.2
-
31
-
-
0036359730
-
A stability-based method for discovering structure in clustered data
-
Ben-Hur A, Elisseeff A, Guyon I. A stability-based method for discovering structure in clustered data. Pac Symp Biocomput 2002;7:6-17.
-
(2002)
Pac Symp Biocomput
, vol.7
, pp. 6-17
-
-
Ben-Hur, A.1
Elisseeff, A.2
Guyon, I.3
-
32
-
-
0001677717
-
Controlling the False Discovery Rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the False Discovery Rate: a practical and powerful approach to multiple testing. J R Stat Soc B 1995;57:289-300.
-
(1995)
J R Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
33
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Ann Stat 2001;29(4):1165-1188.
-
(2001)
Ann Stat
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
34
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, Radmacher M, Simon R, Yakhini Z, Ben-Dor A, Sampas N, Dougherty E, Wang E, Marincola F, Gooden C, Lueders J, Glatfelter A, Pollock P, Carpten J, Gillanders E, Leja D, Dietrich K, Beaudry C, Berens M, Alberts D, Sondak V, Hayward N, Trent J. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 2000;406:536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
Sampas, N.11
Dougherty, E.12
Wang, E.13
Marincola, F.14
Gooden, C.15
Lueders, J.16
Glatfelter, A.17
Pollock, P.18
Carpten, J.19
Gillanders, E.20
Leja, D.21
Dietrich, K.22
Beaudry, C.23
Berens, M.24
Alberts, D.25
Sondak, V.26
Hayward, N.27
Trent, J.28
more..
-
35
-
-
0036050211
-
Pharmacogenomic analysis: correlating molecular substructure classes with microarray gene expression data
-
Blower PE, Yang C, Fligner MA, Verducci JS, Yu L, Richman S, Weinstein JN. Pharmacogenomic analysis: correlating molecular substructure classes with microarray gene expression data. Pharmacogenomics J 2002;2:259-271.
-
(2002)
Pharmacogenomics J
, vol.2
, pp. 259-271
-
-
Blower, P.E.1
Yang, C.2
Fligner, M.A.3
Verducci, J.S.4
Yu, L.5
Richman, S.6
Weinstein, J.N.7
-
36
-
-
0036372855
-
New feature subset selection procedures for classification of expression profiles
-
research, 0017-1-0017-11
-
Bo TH, Jonassen I. New feature subset selection procedures for classification of expression profiles. Genome Biol 2002;3:(research) 0017-1-0017-11.
-
Genome Biol
, vol.2002
-
-
Bo, T.H.1
Jonassen, I.2
-
37
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
38
-
-
77953095629
-
Independent filtering increases detection power for high-throughput experiments
-
Bourgon R, Gentleman R, Huber W. Independent filtering increases detection power for high-throughput experiments. Proc Natl Acad Sci U S A 2010;107(21):9546-9551.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.21
, pp. 9546-9551
-
-
Bourgon, R.1
Gentleman, R.2
Huber, W.3
-
39
-
-
0034525814
-
DRAGON: database referencing of array genes online
-
Bouton CM, Pevsner J. DRAGON: database referencing of array genes online. Bioinformatics 2000;16:1038-1039.
-
(2000)
Bioinformatics
, vol.16
, pp. 1038-1039
-
-
Bouton, C.M.1
Pevsner, J.2
-
40
-
-
0036187914
-
DRAGON view: information visualization for annotated microarray data
-
Bouton C, Pevsner J. DRAGON view: information visualization for annotated microarray data. Bioinformatics 2002;18:323-324.
-
(2002)
Bioinformatics
, vol.18
, pp. 323-324
-
-
Bouton, C.1
Pevsner, J.2
-
41
-
-
0034714421
-
Gene expression data analysis
-
Brazma A, Vilo J. Gene expression data analysis. FEBS Lett 2000;480:17-24.
-
(2000)
FEBS Lett
, vol.480
, pp. 17-24
-
-
Brazma, A.1
Vilo, J.2
-
42
-
-
0030211964
-
Bagging predictors
-
Breiman L. Bagging predictors. Mach Learn 1996;26:123-140.
-
(1996)
Mach Learn
, vol.26
, pp. 123-140
-
-
Breiman, L.1
-
43
-
-
79951747117
-
Random Forests Manual (version 4.0), Technical Report of the University of California
-
Berkeley: Department of Statistics
-
Breiman L, Cutler A. Random Forests Manual (version 4.0), Technical Report of the University of California. Berkeley: Department of Statistics; 2003.
-
(2003)
-
-
Breiman, L.1
Cutler, A.2
-
44
-
-
0035478854
-
Random forests
-
Breiman L. Random forests. Mach Learn 2001;45:5-32.
-
(2001)
Mach Learn
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
47
-
-
0037025618
-
Ranking genes with respect to differential expression
-
preprint 0007.1-preprint 0007.23
-
Broberg P. Ranking genes with respect to differential expression. Genome Biol 2002;3, preprint 0007.1-preprint 0007.23.
-
(2002)
Genome Biol
, Issue.3
-
-
Broberg, P.1
-
48
-
-
0035979269
-
Image metrics in the statistical analysis of DNA microarray data
-
Brown CS, Goodwin PC, Sorger PK. Image metrics in the statistical analysis of DNA microarray data. Proc Natl Acad Sci U S A 2001;98:8944-8949.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 8944-8949
-
-
Brown, C.S.1
Goodwin, P.C.2
Sorger, P.K.3
-
49
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS, Ares M Jr., Haussler D. Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc Natl Acad Sci U S A 2000;97:262-267.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares, M.7
Haussler, D.8
-
50
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Brown PO, Botstein D. Exploring the new world of the genome with DNA microarrays. Nat Genet Suppl 1999;21:33-37.
-
(1999)
Nat Genet Suppl
, vol.21
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
52
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges CJC. A tutorial on support vector machines for pattern recognition. Data Mining Knowl Discov 1998;2:121-167.
-
(1998)
Data Mining Knowl Discov
, vol.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
53
-
-
0033248632
-
Target estimation for bias and mean square reduction
-
Cabrera J, Fernholz LT. Target estimation for bias and mean square reduction. Ann Stat 1999;27:1080-1104.
-
(1999)
Ann Stat
, vol.27
, pp. 1080-1104
-
-
Cabrera, J.1
Fernholz, L.T.2
-
55
-
-
84972893020
-
A dendrite method for cluster analysis
-
Calinski T, Harabasz J. A dendrite method for cluster analysis. Commun Stat 1974;3:1-27.
-
(1974)
Commun Stat
, vol.3
, pp. 1-27
-
-
Calinski, T.1
Harabasz, J.2
-
56
-
-
34548810242
-
Filtering genes to improve sensitivity in oligonucleotide microarray data analysis
-
Calza S, Raffelsberger W, Ploner A, Sahel J, Leveillard T, Pawitan Y. Filtering genes to improve sensitivity in oligonucleotide microarray data analysis. Nucleic Acids Res 2007;35(16).
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.16
-
-
Calza, S.1
Raffelsberger, W.2
Ploner, A.3
Sahel, J.4
Leveillard, T.5
Pawitan, Y.6
-
57
-
-
0033064855
-
DNA microarrays of the complex human cytomegalovirus genome: profiling kinetic class with drug sensitive viral gene expression
-
Chambers J, Angulo A, Amaratunga D, Guo H, Jiang Y, Wan JS, Bittner A, Frueh K, Jackson MR, Peterson PA, Erlander MG, Ghazal P. DNA microarrays of the complex human cytomegalovirus genome: profiling kinetic class with drug sensitive viral gene expression. J Virol 1999;73:5757-5766.
-
(1999)
J Virol
, vol.73
, pp. 5757-5766
-
-
Chambers, J.1
Angulo, A.2
Amaratunga, D.3
Guo, H.4
Jiang, Y.5
Wan, J.S.6
Bittner, A.7
Frueh, K.8
Jackson, M.R.9
Peterson, P.A.10
Erlander, M.G.11
Ghazal, P.12
-
59
-
-
0036169143
-
Using biplots to interpret gene expression patterns in plants
-
Chapman S, Schenk P, Kazan K, Manners J. Using biplots to interpret gene expression patterns in plants. Bioinformatics 2002;18:202-204.
-
(2002)
Bioinformatics
, vol.18
, pp. 202-204
-
-
Chapman, S.1
Schenk, P.2
Kazan, K.3
Manners, J.4
-
60
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
Chen Y, Dougherty ED, Bittner ML. Ratio-based decisions and the quantitative analysis of cDNA microarray images. J Biomed Opt 1997;2:364-374.
-
(1997)
J Biomed Opt
, vol.2
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.D.2
Bittner, M.L.3
-
61
-
-
84902144455
-
Classification and multiple testing for microarray data [PhD dissertation]
-
Newark (NJ): Rutgers University
-
Cherkas Y. Classification and multiple testing for microarray data [PhD dissertation]. Newark (NJ): Rutgers University; 2010.
-
(2010)
-
-
Cherkas, Y.1
-
62
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I. The transcriptional program of sporulation in budding yeast. Science 1998;282:699-705.
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
63
-
-
0036126861
-
A systematic statistical linear modeling approach to oligonucleotide array experiments
-
Chu T-M, Weir B, Wolfinger R. A systematic statistical linear modeling approach to oligonucleotide array experiments. Math Biosci 2002;176:35-51.
-
(2002)
Math Biosci
, vol.176
, pp. 35-51
-
-
Chu, T.-M.1
Weir, B.2
Wolfinger, R.3
-
64
-
-
1542400264
-
Comparison of Li-Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays
-
Chu T-M, Weir B, Wolfinger R. Comparison of Li-Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays. Bioinformatics 2004;20:500-506.
-
(2004)
Bioinformatics
, vol.20
, pp. 500-506
-
-
Chu, T.-M.1
Weir, B.2
Wolfinger, R.3
-
65
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
Churchill GA. Fundamentals of experimental design for cDNA microarrays. Nat Genet 2002;32:490-495.
-
(2002)
Nat Genet
, vol.32
, pp. 490-495
-
-
Churchill, G.A.1
-
66
-
-
0035734274
-
Sex, flies, and microarrays
-
Churchill GA, Oliver B. Sex, flies, and microarrays. Nat Genet 2001;29:355-356.
-
(2001)
Nat Genet
, vol.29
, pp. 355-356
-
-
Churchill, G.A.1
Oliver, B.2
-
68
-
-
0000173488
-
Tree-based models
-
Chambers J, Hastie TJ, editors, Wadsworth
-
Clark LA, Pregibon D. Tree-based models. In: Chambers J, Hastie TJ, editors. Statistical Models in S. Wadsworth; 1992.
-
(1992)
Statistical Models in S
-
-
Clark, L.A.1
Pregibon, D.2
-
69
-
-
0000153536
-
Distance to nearest neighbor as a measure of spatial relationships in populations
-
Clark PJ, Evans FC. Distance to nearest neighbor as a measure of spatial relationships in populations. Ecology 1954;35:445-453.
-
(1954)
Ecology
, vol.35
, pp. 445-453
-
-
Clark, P.J.1
Evans, F.C.2
-
70
-
-
84936916896
-
Robust locally weighted regression and smoothing scatterplots
-
Cleveland WS. Robust locally weighted regression and smoothing scatterplots. J Am Stat Assoc 1979;74:829-836.
-
(1979)
J Am Stat Assoc
, vol.74
, pp. 829-836
-
-
Cleveland, W.S.1
-
73
-
-
0035987143
-
Local mean normalization of microarray element signal intensities across an array surface: quality control and correction of spatially systematic hybridization artifacts
-
Colantuoni C, Zeger S, Pevsner J. Local mean normalization of microarray element signal intensities across an array surface: quality control and correction of spatially systematic hybridization artifacts. Biotechniques 2002;32:1316-1320.
-
(2002)
Biotechniques
, vol.32
, pp. 1316-1320
-
-
Colantuoni, C.1
Zeger, S.2
Pevsner, J.3
-
74
-
-
84952261476
-
Projection pursuit indices based on orthogonal function expansions
-
Cook D, Buja A, Cabrera J. Projection pursuit indices based on orthogonal function expansions. J Comput Graph Stat 1993;2:225-250.
-
(1993)
J Comput Graph Stat
, vol.2
, pp. 225-250
-
-
Cook, D.1
Buja, A.2
Cabrera, J.3
-
76
-
-
84926405165
-
PCANOVA: Combining principal components with analysis of variance to assess group structure
-
Unpublished
-
Coombes KR. PCANOVA: Combining principal components with analysis of variance to assess group structure; 2002, Unpublished.
-
(2002)
-
-
Coombes, K.R.1
-
77
-
-
0000490505
-
A review of classification
-
Cormack RM. A review of classification. J R Stat Soc [Ser A] 1971;134:321-367.
-
(1971)
J R Stat Soc [Ser A]
, vol.134
, pp. 321-367
-
-
Cormack, R.M.1
-
79
-
-
0242408285
-
Data transformation for cDNA microarray data
-
Unpublished
-
Cui X, Kerr MK, Churchill GA. Data transformation for cDNA microarray data; 2002, Unpublished.
-
(2002)
-
-
Cui, X.1
Kerr, M.K.2
Churchill, G.A.3
-
81
-
-
84984934048
-
DNA microarrays in drug discovery and development
-
Debouck C, Goodfellow PN. DNA microarrays in drug discovery and development. Nat Genet Suppl 1999;21:48-50.
-
(1999)
Nat Genet Suppl
, vol.21
, pp. 48-50
-
-
Debouck, C.1
Goodfellow, P.N.2
-
82
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
Dempster AP, Laird NM, Rubin DB. Maximum likelihood from incomplete data via the EM algorithm. J R Stat Soc Ser B 1977;39:1-38.
-
(1977)
J R Stat Soc Ser B
, vol.39
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
83
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi JL, Iyer VR, Brown PO. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 1997;278:680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
84
-
-
0037172724
-
A prediction-based resampling method to estimate the number of clusters in a dataset
-
0036-1-0036-21
-
Dudoit S, Fridlyand J. A prediction-based resampling method to estimate the number of clusters in a dataset. Genome Biol 2002;3: 0036-1-0036-21.
-
(2002)
Genome Biol
, vol.3
-
-
Dudoit, S.1
Fridlyand, J.2
-
85
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit S, Fridlyand J, Speed T. Comparison of discrimination methods for the classification of tumors using gene expression data. J Am Stat Assoc 2002;97:77-87.
-
(2002)
J Am Stat Assoc
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.3
-
86
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit S, Yang YH, Callow MC, Speed TP. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Stat Sin 2002;12:111-140.
-
(2002)
Stat Sin
, vol.12
, pp. 111-140
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.C.3
Speed, T.P.4
-
87
-
-
0012572299
-
A variance-stabilizing transformation for gene expression microarray data
-
Durbin B, Hardin J, Hawkins D, Rocke DM. A variance-stabilizing transformation for gene expression microarray data. Bioinformatics 2002;18:S105-S110.
-
(2002)
Bioinformatics
, vol.18
, pp. S105-S110
-
-
Durbin, B.1
Hardin, J.2
Hawkins, D.3
Rocke, D.M.4
-
89
-
-
84926399277
-
Robbins, empirical Bayes, and microarrays
-
Technical Report of the Stanford University Department of Statistics
-
Efron B. Robbins, empirical Bayes, and microarrays. Technical Report of the Stanford University Department of Statistics; 2001.
-
(2001)
-
-
Efron, B.1
-
91
-
-
0035992248
-
Empirical Bayes methods and false discovery rates for microarrays
-
Efron B, Tibshirani R. Empirical Bayes methods and false discovery rates for microarrays. Genet Epidemiol 2002;23:70-86.
-
(2002)
Genet Epidemiol
, vol.23
, pp. 70-86
-
-
Efron, B.1
Tibshirani, R.2
-
92
-
-
35348890683
-
On testing the significance of sets of genes
-
Efron B, Tibshirani R. On testing the significance of sets of genes. Ann Appl Stat 2007;1:107-129.
-
(2007)
Ann Appl Stat
, vol.1
, pp. 107-129
-
-
Efron, B.1
Tibshirani, R.2
-
94
-
-
0003625199
-
Microarrays, empirical Bayes methods, and false discovery rates
-
Technical Report of the Stanford University Department of Statistics
-
Efron B, Storey JD, Tibshirani R. Microarrays, empirical Bayes methods, and false discovery rates. Technical Report of the Stanford University Department of Statistics; 2001.
-
(2001)
-
-
Efron, B.1
Storey, J.D.2
Tibshirani, R.3
-
98
-
-
77950537175
-
Regularization paths for generalized linear models via coordinate descent
-
Friedman J, Hastie T, Tibshirani R. Regularization paths for generalized linear models via coordinate descent. J Stat Softw 2010;33:1-22.
-
(2010)
J Stat Softw
, vol.33
, pp. 1-22
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
100
-
-
0035845501
-
Correspondence analysis applied to microarray data
-
Fellenberg K, Hauser N, Brors B, Neutzner A, Hoheisel J, Vingron M. Correspondence analysis applied to microarray data. Proc Natl Acad Sci U S A 2001;98:10781-10786.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 10781-10786
-
-
Fellenberg, K.1
Hauser, N.2
Brors, B.3
Neutzner, A.4
Hoheisel, J.5
Vingron, M.6
-
102
-
-
0000764772
-
The use of multiple measurements in taxonomic problems
-
Fisher RA. The use of multiple measurements in taxonomic problems. Ann Eugen 1936;7:179-188.
-
(1936)
Ann Eugen
, vol.7
, pp. 179-188
-
-
Fisher, R.A.1
-
103
-
-
0002386913
-
On the interpretation of χ2 from contingency tables and the calculation of p
-
Fisher RA. On the interpretation of χ2 from contingency tables and the calculation of p. J R Stat Soc Ser B 1922;85:87-94.
-
(1922)
J R Stat Soc Ser B
, vol.85
, pp. 87-94
-
-
Fisher, R.A.1
-
106
-
-
0003909532
-
Discriminatory analysis. nonparametric discrimination: consistency properties
-
Technical Report of the USAF School of Aviation Medicine, Randolph Field (TX)
-
Fix E, Hodges J. Discriminatory analysis. nonparametric discrimination: consistency properties. Technical Report of the USAF School of Aviation Medicine, Randolph Field (TX); 1951.
-
(1951)
-
-
Fix, E.1
Hodges, J.2
-
107
-
-
0032269108
-
How many clusters? Which clustering method? Answers via modelbased cluster analysis
-
Fraley C, Raftery AE. How many clusters? Which clustering method? Answers via modelbased cluster analysis. Comput J 1998;41:578-588.
-
(1998)
Comput J
, vol.41
, pp. 578-588
-
-
Fraley, C.1
Raftery, A.E.2
-
108
-
-
0031211090
-
A decision-theoretic generalization of on-line learning and an application to boosting
-
Freund Y, Schapire RE. A decision-theoretic generalization of on-line learning and an application to boosting. J Comput Syst Sci 1997;55:119-139.
-
(1997)
J Comput Syst Sci
, vol.55
, pp. 119-139
-
-
Freund, Y.1
Schapire, R.E.2
-
109
-
-
84950754164
-
Exploratory projection pursuit
-
Friedman JH. Exploratory projection pursuit. J Am Stat Assoc 1987;82:249-266.
-
(1987)
J Am Stat Assoc
, vol.82
, pp. 249-266
-
-
Friedman, J.H.1
-
110
-
-
84887916087
-
Regularized discriminant analysis
-
Friedman JH. Regularized discriminant analysis. J Am Stat Assoc 1989;84:165-175.
-
(1989)
J Am Stat Assoc
, vol.84
, pp. 165-175
-
-
Friedman, J.H.1
-
111
-
-
0004067283
-
Flexible metric nearest neighbor classification
-
Technical Report of the Stanford University Statistics Department
-
Friedman JH. Flexible metric nearest neighbor classification. Technical Report of the Stanford University Statistics Department; 1994.
-
(1994)
-
-
Friedman, J.H.1
-
112
-
-
8644255832
-
Clustering objects on subsets of attributes
-
Friedman JH, Meulman JJ. Clustering objects on subsets of attributes. J R Stat Soc Ser B 2004;66:815-849.
-
(2004)
J R Stat Soc Ser B
, vol.66
, pp. 815-849
-
-
Friedman, J.H.1
Meulman, J.J.2
-
114
-
-
0016102310
-
A projection pursuit algorithm for exploratory data analysis
-
Friedman JH, Tukey JW. A projection pursuit algorithm for exploratory data analysis. IEEE Trans Comput 1974;C-23:881-890.
-
(1974)
IEEE Trans Comput
, vol.C
, Issue.23
, pp. 881-890
-
-
Friedman, J.H.1
Tukey, J.W.2
-
115
-
-
77956887176
-
The biplot graphical display of matrices with applications to principal component analysis
-
Gabriel KR. The biplot graphical display of matrices with applications to principal component analysis. Biometrika 1971;58:453-467.
-
(1971)
Biometrika
, vol.58
, pp. 453-467
-
-
Gabriel, K.R.1
-
116
-
-
0025327524
-
Biplots in biomedical research
-
Gabriel KR, Odoroff CL. Biplots in biomedical research. Stat Med 1990;9:469-485.
-
(1990)
Stat Med
, vol.9
, pp. 469-485
-
-
Gabriel, K.R.1
Odoroff, C.L.2
-
117
-
-
0034710876
-
Coupled two-way clustering analysis of gene microarray data
-
Getz G, Levine E, Domany E. Coupled two-way clustering analysis of gene microarray data. Proc Natl Acad Sci U S A 2000;97:12079-12084.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 12079-12084
-
-
Getz, G.1
Levine, E.2
Domany, E.3
-
119
-
-
0036007438
-
Microarrays in ecology and evolution: a preview
-
Gibson G. Microarrays in ecology and evolution: a preview. Ecology 2002;11:17-24.
-
(2002)
Ecology
, vol.11
, pp. 17-24
-
-
Gibson, G.1
-
120
-
-
0037314037
-
Combinatorial image analysis of DNA microarray features
-
Glasbey CA, Ghazal P. Combinatorial image analysis of DNA microarray features. Bioinformatics 2003;19:194-203.
-
(2003)
Bioinformatics
, vol.19
, pp. 194-203
-
-
Glasbey, C.A.1
Ghazal, P.2
-
122
-
-
84972517864
-
Discriminant analysis and clustering
-
Gnanadesikan R, Kettenring JR. Discriminant analysis and clustering. Stat Sci 1989;4:34-69.
-
(1989)
Stat Sci
, vol.4
, pp. 34-69
-
-
Gnanadesikan, R.1
Kettenring, J.R.2
-
124
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999;286:531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
126
-
-
0004241258
-
-
Boca Raton (FL): Chapman and Hall/CRC
-
Gordon AD. Classification. Boca Raton (FL): Chapman and Hall/CRC; 1999.
-
(1999)
Classification
-
-
Gordon, A.D.1
-
127
-
-
0035221240
-
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
-
Research 00004.1-Research 00004.13
-
Haab B, Dunham M, Brown P. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol 2001;2:Research 00004.1-Research 00004.13.
-
Genome Biol
, vol.2001
, Issue.2
-
-
Haab, B.1
Dunham, M.2
Brown, P.3
-
128
-
-
0000552128
-
Polynomial projection pursuit
-
Hall P. Polynomial projection pursuit. Ann Stat 1989;17:589-605.
-
(1989)
Ann Stat
, vol.17
, pp. 589-605
-
-
Hall, P.1
-
130
-
-
84927511887
-
Direct clustering of a data matrix
-
Hartigan JA. Direct clustering of a data matrix. J Am Stat Assoc 1972;67:123-129.
-
(1972)
J Am Stat Assoc
, vol.67
, pp. 123-129
-
-
Hartigan, J.A.1
-
133
-
-
0034568109
-
Gene shaving" as a method for identifying distinct sets of genes with similar expression patterns
-
Research 0003.1-0003.21
-
Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, Brown P. "Gene shaving" as a method for identifying distinct sets of genes with similar expression patterns. Genome Biol 2000;1: Research 0003.1-0003.21.
-
(2000)
Genome Biol
, vol.1
-
-
Hastie, T.1
Tibshirani, R.2
Eisen, M.B.3
Alizadeh, A.4
Levy, R.5
Staudt, L.6
Chan, W.C.7
Botstein, D.8
Brown, P.9
-
134
-
-
0003684449
-
-
Heidelberg: Springer-Verlag
-
Hastie T, Tibshirani R, Friedman J. Elements of Statistical Learning: Data Mining, Inference and Prediction, Second Edition, Heidelberg: Springer-Verlag; 2009.
-
(2009)
Elements of Statistical Learning: Data Mining, Inference and Prediction, Second Edition
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
135
-
-
0001068115
-
Automatic interaction detection
-
Hawkins DM, editors, Cambridge: Cambridge University Press
-
Hawkins DM, Kass GV. Automatic interaction detection. In: Hawkins DM, editors. Topics in Multivariate Analysis. Cambridge: Cambridge University Press; 1982.
-
(1982)
Topics in Multivariate Analysis
-
-
Hawkins, D.M.1
Kass, G.V.2
-
136
-
-
0003074296
-
SVM - trends and controversies
-
Hearst M. SVM - trends and controversies. IEEE Intell Syst 1998;13:18.
-
(1998)
IEEE Intell Syst
, vol.13
, pp. 18
-
-
Hearst, M.1
-
137
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
Hedenfalk I, Duggan D, Chen Y, Radmacher M, Bittner M, Simon R, Meltzer P, Gusterson B, Esteller M, Kallioniemi OP, Wilfond B, Borg A, Trent J. Gene-expression profiles in hereditary breast cancer. N Engl J Med 2001;344:539-548.
-
(2001)
N Engl J Med
, vol.344
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
Radmacher, M.4
Bittner, M.5
Simon, R.6
Meltzer, P.7
Gusterson, B.8
Esteller, M.9
Kallioniemi, O.P.10
Wilfond, B.11
Borg, A.12
Trent, J.13
-
138
-
-
0003460870
-
Exploratory data analysis
-
Kotz S, Johnson NL, Read CB, editors, New York: John Wiley & Sons
-
Hoaglin DC. Exploratory data analysis. In: Kotz S, Johnson NL, Read CB, editors. Encyclopedia of Statistical Sciences. Volume 2. New York: John Wiley & Sons; 1982. p 579-583.
-
(1982)
Encyclopedia of Statistical Sciences
, vol.2
, pp. 579-583
-
-
Hoaglin, D.C.1
-
140
-
-
33645762226
-
A sharper Bonferroni procedure for multiple tests of significance
-
Hochberg Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika 1988;75:800-803.
-
(1988)
Biometrika
, vol.75
, pp. 800-803
-
-
Hochberg, Y.1
-
141
-
-
77954206273
-
FABIA: factor analysis for bicluster acquisition
-
Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, Kasim A, Khamiakova T, Van Sanden S, Lin D, Talloen W, Bijnens L, Göhlmann HWH, Shkedy Z, Clevert D.-A. FABIA: factor analysis for bicluster acquisition. Bioinformatics 2010;26(12):1520-1527.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
, pp. 1520-1527
-
-
Hochreiter, S.1
Bodenhofer, U.2
Heusel, M.3
Mayr, A.4
Mitterecker, A.5
Kasim, A.6
Khamiakova, T.7
Van Sanden, S.8
Lin, D.9
Talloen, W.10
Bijnens, L.11
Göhlmann, H.W.H.12
Shkedy, Z.13
Clevert, D.-A.14
-
142
-
-
0037076772
-
Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis
-
research 0033-1-0033-11
-
Hoffmann R, Seidl T, Dugas M. Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis. Genome Biol 2002;3:research 0033-1-0033-11.
-
(2002)
Genome Biol
, vol.3
-
-
Hoffmann, R.1
Seidl, T.2
Dugas, M.3
-
144
-
-
0036900267
-
Options available - from start to finish - for obtaining data from DNA microarrays II
-
Holloway AJ, Van Laar RK, Tothill RW, Bowtell DD. Options available - from start to finish - for obtaining data from DNA microarrays II. Nat Genet 2002;32:481-489.
-
(2002)
Nat Genet
, vol.32
, pp. 481-489
-
-
Holloway, A.J.1
Van Laar, R.K.2
Tothill, R.W.3
Bowtell, D.D.4
-
145
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm S. A simple sequentially rejective multiple test procedure. Scand J Stat 1979;6:65-70.
-
(1979)
Scand J Stat
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
147
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA. Identifying biological themes within lists of genes with EASE. Genome Biol 2003;4:R70.
-
(2003)
Genome Biol
, vol.4
, pp. R70
-
-
Hosack, D.A.1
Dennis Jr, G.2
Sherman, B.T.3
Lane, H.C.4
Lempicki, R.A.5
-
148
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, Heydebreck AV, Silvermaan H, Poustka A, Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002;18:1-9.
-
(2002)
Bioinformatics
, vol.18
, pp. 1-9
-
-
Huber, W.1
Heydebreck, A.V.2
Silvermaan, H.3
Poustka, A.4
Vingron, M.5
-
149
-
-
0003722860
-
How to Detect and Handle Outliers
-
The ASQC Basic References in Quality Control: Statistical Techniques, Edward F. Mykytka, Editor
-
Iglewicz B and Hoaglin D. Volume 16: How to Detect and Handle Outliers, The ASQC Basic References in Quality Control: Statistical Techniques, Edward F. Mykytka, Editor, 1993.
-
(1993)
, vol.16
-
-
Iglewicz, B.1
Hoaglin, D.2
-
150
-
-
0030305457
-
R: a language for data analysis and graphics
-
Ihaka R, Gentleman R. R: a language for data analysis and graphics. J Comput Graph Stat 1996;5:299-314.
-
(1996)
J Comput Graph Stat
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
151
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 2003;31(4):1-8.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.4
, pp. 1-8
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
152
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003;4(2):249-264.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
153
-
-
0035733752
-
Contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
-
Jin W, Riley R, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G. Contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat Genet 2001;29:389-395.
-
(2001)
Nat Genet
, vol.29
, pp. 389-395
-
-
Jin, W.1
Riley, R.2
Wolfinger, R.D.3
White, K.P.4
Passador-Gurgel, G.5
Gibson, G.6
-
154
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucl Acids Res 2000;28:27-30.
-
(2000)
Nucl Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
155
-
-
77649106799
-
Informative or noninformative calls for gene expression: a latent variable approach
-
Article 4. doi: 10.2202/1544-6115.1460. Epub 2010 Jan 6
-
Kasim A, Lin D, Van Sanden S, Clevert DA, Bijnens L, Göhhlmann H, Amaratunga D, Hochreiter S, Shkedy Z, Talloen W. Informative or noninformative calls for gene expression: a latent variable approach. Stat Appl Genet Mol Biol 2010;9(1):Article 4. doi: 10.2202/1544-6115.1460. Epub 2010 Jan 6.
-
Stat Appl Genet Mol Biol
, vol.2010
, Issue.9
-
-
Kasim, A.1
Lin, D.2
Van Sanden, S.3
Clevert, D.A.4
Bijnens, L.5
Göhhlmann, H.6
Amaratunga, D.7
Hochreiter, S.8
Shkedy, Z.9
Talloen, W.10
-
157
-
-
0036012367
-
Statistical analysis of a gene expression microarray experiment with replication
-
Kerr K, Afshari CA, Lee B, Bushel P, Martinez J, Walker NJ, Churchill GA. Statistical analysis of a gene expression microarray experiment with replication. Stat Sin 2002;12:203-218.
-
(2002)
Stat Sin
, vol.12
, pp. 203-218
-
-
Kerr, K.1
Afshari, C.A.2
Lee, B.3
Bushel, P.4
Martinez, J.5
Walker, N.J.6
Churchill, G.A.7
-
158
-
-
0035979259
-
Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments
-
Kerr MK, Churchill GA. Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments. Proc Natl Acad Sci U S A 2000;98:8961-8965.
-
(2000)
Proc Natl Acad Sci U S A
, vol.98
, pp. 8961-8965
-
-
Kerr, M.K.1
Churchill, G.A.2
-
159
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
Kerr MK, Churchill GA. Statistical design and the analysis of gene expression microarray data. Genet Res Camb 2001a;77:123-128.
-
(2001)
Genet Res Camb
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
160
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr MK, Churchill GA. Experimental design for gene expression microarrays. Biostatistics 2001b;2:183-202.
-
(2001)
Biostatistics
, vol.2
, pp. 183-202
-
-
Kerr, M.K.1
Churchill, G.A.2
-
161
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr MK, Martin M, Churchill GA. Analysis of variance for gene expression microarray data. J Comput Biol 2000;7:819-837.
-
(2000)
J Comput Biol
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
162
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan J, Wei JS, Ringner M, Saal LH, Ladanyi M, Westermann F, Berthold F, Schwab M, Antonescu CR, Peterson C, Meltzer PS. Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat Med 2001;7:673-679.
-
(2001)
Nat Med
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, P.S.11
-
163
-
-
0035491482
-
Proteomic profiling of the cancer microenvironment by antibody arrays
-
Knezevic V, Leethanakul C, Bichsel VE, Worth JM, Prabhu VV, Gutkind JS, Liotta LA, Munson PJ, Petricoin EF, Krizman DB. Proteomic profiling of the cancer microenvironment by antibody arrays. Proteomics 2001;1:1271-1278.
-
(2001)
Proteomics
, vol.1
, pp. 1271-1278
-
-
Knezevic, V.1
Leethanakul, C.2
Bichsel, V.E.3
Worth, J.M.4
Prabhu, V.V.5
Gutkind, J.S.6
Liotta, L.A.7
Munson, P.J.8
Petricoin, E.F.9
Krizman, D.B.10
-
164
-
-
0035072645
-
Protein microarrays: prospects and problems
-
Kodadek T. Protein microarrays: prospects and problems. Chem Biol 2001;8:105-115.
-
(2001)
Chem Biol
, vol.8
, pp. 105-115
-
-
Kodadek, T.1
-
165
-
-
0003410791
-
-
Berlin, Heidelberg, New York: Springer-Verlag
-
Kohonen T. Self-organizing Maps. Berlin, Heidelberg, New York: Springer-Verlag; 1995.
-
(1995)
Self-organizing Maps
-
-
Kohonen, T.1
-
167
-
-
0002567916
-
Ranking principal components to reflect group structure
-
Krzanowski WJ. Ranking principal components to reflect group structure. J Chemom 1992;6:97-102.
-
(1992)
J Chemom
, vol.6
, pp. 97-102
-
-
Krzanowski, W.J.1
-
169
-
-
0023905024
-
A criterion for determining the number of groups in a data set using sum of squares clustering
-
Krzanowski WJ, Lai YT. A criterion for determining the number of groups in a data set using sum of squares clustering. Biometrics 1985;44:23-34.
-
(1985)
Biometrics
, vol.44
, pp. 23-34
-
-
Krzanowski, W.J.1
Lai, Y.T.2
-
172
-
-
0036372382
-
Permutation validated principal components analysis of microarray data
-
Landgrebe J, Wurst W, Welzl G. Permutation validated principal components analysis of microarray data. Genome Biol 2002;3:1-11.
-
(2002)
Genome Biol
, vol.3
, pp. 1-11
-
-
Landgrebe, J.1
Wurst, W.2
Welzl, G.3
-
173
-
-
0036012349
-
Plaid models for gene expression data
-
Lazzeroni L, Owen AB. Plaid models for gene expression data. Stat Sin 2002;12:61-86.
-
(2002)
Stat Sin
, vol.12
, pp. 61-86
-
-
Lazzeroni, L.1
Owen, A.B.2
-
175
-
-
0034730124
-
Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations
-
Lee MLT, Kuo FC, Whitmore GA, Sklar J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci U S A 2000;97:9834-9839.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 9834-9839
-
-
Lee, M.L.T.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
176
-
-
23544472984
-
Data mining criteria for tree-based regression and classification
-
Unpublished
-
Lee YS, Buja A. Data mining criteria for tree-based regression and classification. Unpublished; 1999.
-
(1999)
-
-
Lee, Y.S.1
Buja, A.2
-
177
-
-
0033966933
-
High-throughput gene expression analysis for drug discovery
-
Lennon GG. High-throughput gene expression analysis for drug discovery. Drug Discov Today 2000;5:59-66.
-
(2000)
Drug Discov Today
, vol.5
, pp. 59-66
-
-
Lennon, G.G.1
-
178
-
-
0017134508
-
Spectral mapping, a technique for classifying biological activity profiles of chemical compounds
-
Lewi PJ. Spectral mapping, a technique for classifying biological activity profiles of chemical compounds. Arzneimttel Forschung (Drug Research) 1976;26:1295-1300.
-
(1976)
Arzneimttel Forschung (Drug Research)
, vol.26
, pp. 1295-1300
-
-
Lewi, P.J.1
-
179
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application
-
research 0032-1-0032-11
-
Li C, Wong WH. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol 2001a;2(8):research 0032-1-0032-11.
-
(2001)
Genome Biol
, vol.2
, Issue.8
-
-
Li, C.1
Wong, W.H.2
-
180
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
-
Li C, Wong WH. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 2001b;98:31-36.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
181
-
-
0024521543
-
A concordance correlation coefficient to evaluate reproducibility
-
Lin LI-K. A concordance correlation coefficient to evaluate reproducibility. Biometrics 1989;45:255-268.
-
(1989)
Biometrics
, vol.45
, pp. 255-268
-
-
Lin, L.-K.1
-
183
-
-
84883438817
-
-
Springer-Verlag
-
Lin D, Shkedy Z, Yekutieli D, Amaratunga D, Bijnens L, editors. Modeling Dose-response Microarray Data in Early Drug Development Experiments Using R. Springer-Verlag; 2012.
-
(2012)
Modeling Dose-response Microarray Data in Early Drug Development Experiments Using R
-
-
Lin, D.1
Shkedy, Z.2
Yekutieli, D.3
Amaratunga, D.4
Bijnens, L.5
-
185
-
-
84926399532
-
Weighted Chinese restaurant processes and Bayesian mixture models
-
Unpublished
-
Lo AY, Brunner LJ, Chan AT. Weighted Chinese restaurant processes and Bayesian mixture models. Unpublished; 2000.
-
(2000)
-
-
Lo, A.Y.1
Brunner, L.J.2
Chan, A.T.3
-
186
-
-
10544256600
-
Expression monitoring by hybridization to highdensity oligonucleotide arrays
-
Lockhart D, Dong H, Byrne M, Follettie M, Gallo M, Chee M, Mittmann M, Wang C, Kobayashi M, Horton H, Brown E. Expression monitoring by hybridization to highdensity oligonucleotide arrays. Nat Biotechnol 1996;14:1675-1680.
-
(1996)
Nat Biotechnol
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.1
Dong, H.2
Byrne, M.3
Follettie, M.4
Gallo, M.5
Chee, M.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.11
-
187
-
-
0036012343
-
Replicated microarray data
-
Lonnstedt I, Speed TP. Replicated microarray data. Stat Sin 2002;12:31-46.
-
(2002)
Stat Sin
, vol.12
, pp. 31-46
-
-
Lonnstedt, I.1
Speed, T.P.2
-
188
-
-
34248561457
-
A consolidated approach to analyzing data from high throughput protein microarrays with an application to immune response profiling in humans
-
Lubomirski M, D'Andrea MR, Belkowski SM, Cabrera J, Dixon JM, and Amaratunga D. A consolidated approach to analyzing data from high throughput protein microarrays with an application to immune response profiling in humans. Journal of Computational Biology 2007;14:350-359.
-
(2007)
Journal of Computational Biology
, vol.14
, pp. 350-359
-
-
Lubomirski, M.1
D'Andrea, M.R.2
Belkowski, S.M.3
Cabrera, J.4
Dixon, J.M.5
Amaratunga, D.6
-
189
-
-
0036898579
-
Protein microarrays and proteomics
-
MacBeath G. Protein microarrays and proteomics. Nat Genet 2002;32:526-532.
-
(2002)
Nat Genet
, vol.32
, pp. 526-532
-
-
MacBeath, G.1
-
193
-
-
0017282972
-
The powers of some tests of the quality of normal means against an ordered alternative
-
Marcus R. The powers of some tests of the quality of normal means against an ordered alternative. Biometrika 1976;63:177-83.
-
(1976)
Biometrika
, vol.63
, pp. 177-183
-
-
Marcus, R.1
-
197
-
-
0036203115
-
A mixture model-based approach to clustering of microarray expression data
-
McLachlan GJ, Bean RW, Peel D. A mixture model-based approach to clustering of microarray expression data. Bioinformatics 2002;18:413-422.
-
(2002)
Bioinformatics
, vol.18
, pp. 413-422
-
-
McLachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
199
-
-
84926405161
-
Sialin-deficient mice: a novel animal model for infantile free sialic acid storage disease
-
ISSD:Society for Neuroscience 35th Annual Meeting. Washington, USA
-
Moechars D, Vanacker N, Cryns K, Andries L, Mancini G, and Verheijen F. Sialin-deficient mice: a novel animal model for infantile free sialic acid storage disease. 2005. ISSD:Society for Neuroscience 35th Annual Meeting. Washington, USA.
-
(2005)
-
-
Moechars, D.1
Vanacker, N.2
Cryns, K.3
Andries, L.4
Mancini, G.5
Verheijen, F.6
-
200
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, Lehar J, Puigserver P, Carlsson E, Ridderstrale M, Laurila E, Houstis N, Daly MJ, Patterson N, Mesirov JP, Golub TR, Tamayo P, Spiegelman B, Lander ES, Hirschhorn JN, Altshuler D, Groop LC. PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet 2003;34:267-273.
-
(2003)
Nat Genet
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstrale, M.9
Laurila, E.10
Houstis, N.11
Daly, M.J.12
Patterson, N.13
Mesirov, J.P.14
Golub, T.R.15
Tamayo, P.16
Spiegelman, B.17
Lander, E.S.18
Hirschhorn, J.N.19
Altshuler, D.20
Groop, L.C.21
more..
-
201
-
-
0006178946
-
Problems in the analysis of survey data and a proposal
-
Morgan JN, Sonquist JA. Problems in the analysis of survey data and a proposal. J Am Stat Assoc 1963;58:415-434.
-
(1963)
J Am Stat Assoc
, vol.58
, pp. 415-434
-
-
Morgan, J.N.1
Sonquist, J.A.2
-
203
-
-
0036574916
-
Statistical issues with microarrays: processing and analysis
-
Nadon R, Shoemaker J. Statistical issues with microarrays: processing and analysis. Trends Genet 2002;18:265-271.
-
(2002)
Trends Genet
, vol.18
, pp. 265-271
-
-
Nadon, R.1
Shoemaker, J.2
-
205
-
-
0034923013
-
On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data
-
Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J Comput Biol 2001;8:37-52.
-
(2001)
J Comput Biol
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
206
-
-
34250305651
-
Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
-
Newton MA, Quintana FA, den Boon JA, Sengupta S, Ahlquist P. Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis. Ann Appl Stat 2007;1:85-106.
-
(2007)
Ann Appl Stat
, vol.1
, pp. 85-106
-
-
Newton, M.A.1
Quintana, F.A.2
Den Boon, J.A.3
Sengupta, S.4
Ahlquist, P.5
-
207
-
-
12244284624
-
DNA microarray experiments: biological and technological aspects
-
Nguyen DV, Arpat AB, Wang N, Carroll RJ. DNA microarray experiments: biological and technological aspects. Biometrics 2002;58:701-717.
-
(2002)
Biometrics
, vol.58
, pp. 701-717
-
-
Nguyen, D.V.1
Arpat, A.B.2
Wang, N.3
Carroll, R.J.4
-
208
-
-
0036166439
-
Tumor classification by partial least squares using microarray gene expression data
-
Nguyen DV, Rocke DM. Tumor classification by partial least squares using microarray gene expression data. Bioinformatics 2002;18:39-50.
-
(2002)
Bioinformatics
, vol.18
, pp. 39-50
-
-
Nguyen, D.V.1
Rocke, D.M.2
-
209
-
-
0034628487
-
Guilt-by-association goes global
-
Oliver S. Guilt-by-association goes global. Nature 2000;403:601-603.
-
(2000)
Nature
, vol.403
, pp. 601-603
-
-
Oliver, S.1
-
210
-
-
0036372266
-
Model-based cluster analysis of microarray gene-expression data
-
research 0009.1-0009.8
-
Pan W, Lin J, Le C. Model-based cluster analysis of microarray gene-expression data. Genome Biol 2002;3(2):research 0009.1-0009.8.
-
(2002)
Genome Biol
, vol.3
, Issue.2
-
-
Pan, W.1
Lin, J.2
Le, C.3
-
211
-
-
3142673366
-
Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex
-
Pavlidis P, Qin J, Arango V, Mann JJ, Sibille E. Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex. Neurochem Res 2004;29:1213-1222.
-
(2004)
Neurochem Res
, vol.29
, pp. 1213-1222
-
-
Pavlidis, P.1
Qin, J.2
Arango, V.3
Mann, J.J.4
Sibille, E.5
-
212
-
-
0037620663
-
Gene selection and clustering for time-course and dose-response microarray experiments using orderrestricted inference
-
Peddada S, Lobenhofer EK, Li L, Afshari CA, Weinberg CR, Umbach DM. Gene selection and clustering for time-course and dose-response microarray experiments using orderrestricted inference. Bioinformatics 2003;19(7):834-841.
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 834-841
-
-
Peddada, S.1
Lobenhofer, E.K.2
Li, L.3
Afshari, C.A.4
Weinberg, C.R.5
Umbach, D.M.6
-
213
-
-
27544514952
-
ORIOGEN: order restricted inference for ordered gene expression data
-
Peddada S, Harris S Harvey E. ORIOGEN: order restricted inference for ordered gene expression data. Bioinformatics 2005;21(20):3933-3934.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3933-3934
-
-
Peddada, S.1
Harris, S.2
Harvey, E.3
-
214
-
-
78650106545
-
Analysis of correlated gene expression data on ordered Categories
-
Peddada S, Harris S, Davidov O. Analysis of correlated gene expression data on ordered Categories. J Indian Soc Agric Stat 2010;64(1):45-60.
-
(2010)
J Indian Soc Agric Stat
, vol.64
, Issue.1
, pp. 45-60
-
-
Peddada, S.1
Harris, S.2
Davidov, O.3
-
215
-
-
84866300749
-
Statistical analysis of gene expression studies with ordered experimental conditions
-
Peddada S, Umbrach DM, Harris S. Statistical analysis of gene expression studies with ordered experimental conditions. Handbook Stat 2012;28:39-65.
-
(2012)
Handbook Stat
, vol.28
, pp. 39-65
-
-
Peddada, S.1
Umbrach, D.M.2
Harris, S.3
-
216
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, McLaughlin ME, Kim JY, Goumnerova LC, Black PM, Lau C, Allen JC, Zagzag D, Olson JM, Curran T, Wetmore C, Biegel JA, Poggio T, Mukherjee S, Rifkin R, Califano A, Stolovitzky G, Louis DN, Mesirov JP, Lander ES, Golub TR. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 2002;415:436-442.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.7
Goumnerova, L.C.8
Black, P.M.9
Lau, C.10
Allen, J.C.11
Zagzag, D.12
Olson, J.M.13
Curran, T.14
Wetmore, C.15
Biegel, J.A.16
Poggio, T.17
Mukherjee, S.18
Rifkin, R.19
Califano, A.20
Stolovitzky, G.21
Louis, D.N.22
Mesirov, J.P.23
Lander, E.S.24
Golub, T.R.25
more..
-
217
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J. Microarray data normalization and transformation. Nat Genet 2002;32:496-501.
-
(2002)
Nat Genet
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
219
-
-
33744455444
-
On methods for gene function scoring as a means of facilitating the interpretation of microarray results
-
Raghavan N, Amaratunga D, Cabrera J, Nie A, Jie Q, McMillian M. On methods for gene function scoring as a means of facilitating the interpretation of microarray results. J Comput Biol 2006;13:798-809.
-
(2006)
J Comput Biol
, vol.13
, pp. 798-809
-
-
Raghavan, N.1
Amaratunga, D.2
Cabrera, J.3
Nie, A.4
Jie, Q.5
McMillian, M.6
-
220
-
-
36448986741
-
The high-level similarity of some disparate gene expression measures
-
Raghavan N, De Bondt A, Talloen W, Moechars D, Gohhlmann H, Amaratunga D. The high-level similarity of some disparate gene expression measures, Bioinformatics 2007;23:3032-3038.
-
Bioinformatics
, vol.2007
, pp. 3032-3038
-
-
Raghavan, N.1
De Bondt, A.2
Talloen, W.3
Moechars, D.4
Gohhlmann, H.5
Amaratunga, D.6
-
221
-
-
84926405160
-
Fuzzy class prediction in toxicogenomics and other microarray applications
-
Unpublished
-
Raghavan N, Nie A, McMillian M, Amaratunga D. Fuzzy class prediction in toxicogenomics and other microarray applications. Unpublished; 2013.
-
(2013)
-
-
Raghavan, N.1
Nie, A.2
McMillian, M.3
Amaratunga, D.4
-
222
-
-
84865059742
-
A linear prediction rule based on ensemble classifiers for non-genotoxic carcinogenicity
-
Raghavan N, Nie A, McMillian M, Amaratunga D. A linear prediction rule based on ensemble classifiers for non-genotoxic carcinogenicity. Stat Biopharm Res 2011;4:185-193.
-
(2011)
Stat Biopharm Res
, vol.4
, pp. 185-193
-
-
Raghavan, N.1
Nie, A.2
McMillian, M.3
Amaratunga, D.4
-
223
-
-
0001565436
-
The utilization of multiple measurements in problems of biological classifications
-
Rao CR. The utilization of multiple measurements in problems of biological classifications. J R Stat Assoc [Ser B] 1948;10:159-203.
-
(1948)
J R Stat Assoc [Ser B]
, vol.10
, pp. 159-203
-
-
Rao, C.R.1
-
224
-
-
0033657261
-
Principal components analysis to summarize microarray experiments: application to sporulation time series
-
Raychaudhuri S, Stuart JM, Altman RB. Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac Symp Biocomput 2000;5:452-463.
-
(2000)
Pac Symp Biocomput
, vol.5
, pp. 452-463
-
-
Raychaudhuri, S.1
Stuart, J.M.2
Altman, R.B.3
-
226
-
-
0001531075
-
An asymptotic expansion for samples from a finite population
-
Robinson J. An asymptotic expansion for samples from a finite population. Ann Stat 1978;6(5):1005-1011.
-
(1978)
Ann Stat
, vol.6
, Issue.5
, pp. 1005-1011
-
-
Robinson, J.1
-
228
-
-
0035684378
-
A model for measurement error for gene expression arrays
-
Rocke DM, Durbin B. A model for measurement error for gene expression arrays. J Comput Biol 2001;8:557-569.
-
(2001)
J Comput Biol
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
229
-
-
84926396727
-
Approximate variance-stabilizing transformations for gene expression microarrays
-
Rocke DM, Durbin B. Approximate variance-stabilizing transformations for gene expression microarrays. J Comput Biol 2002;8:557-569.
-
(2002)
J Comput Biol
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
230
-
-
34548452938
-
Piecewise linear regularized solution paths
-
Rosset S, Zhu J. Piecewise linear regularized solution paths. Ann Stat 2007;35:1012-1030.
-
(2007)
Ann Stat
, vol.35
, pp. 1012-1030
-
-
Rosset, S.1
Zhu, J.2
-
231
-
-
0003758190
-
Estimating the posterior probability of differential gene expression from microarray data
-
Unpublished
-
Sapir M, Churchill GA. Estimating the posterior probability of differential gene expression from microarray data. Unpublished; 2000.
-
(2000)
-
-
Sapir, M.1
Churchill, G.A.2
-
232
-
-
0035752668
-
Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
-
Schadt EE, Li C, Ellis B, Wong WH. Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data. J Cell Biochem 2001;84(37):120-125.
-
(2001)
J Cell Biochem
, vol.84
, Issue.37
, pp. 120-125
-
-
Schadt, E.E.1
Li, C.2
Ellis, B.3
Wong, W.H.4
-
233
-
-
0034536614
-
Analyzing high-density oligonucleotide gene expression array data
-
Schadt EE, Li C, Su C, Wong WH. Analyzing high-density oligonucleotide gene expression array data. J Cell Biochem 2000;80:192-202.
-
(2000)
J Cell Biochem
, vol.80
, pp. 192-202
-
-
Schadt, E.E.1
Li, C.2
Su, C.3
Wong, W.H.4
-
235
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995;270:467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
236
-
-
0034656561
-
Normalization strategies for cDNA microarrays
-
Schuchhardt J, Beule D, Malik A,Wolski E, Eickhoff H, Lehrach H, Herzel H. Normalization strategies for cDNA microarrays. Nucl Acids Res 2000;28:e47.
-
(2000)
Nucl Acids Res
, vol.28
, pp. e47
-
-
Schuchhardt, J.1
Beule, D.2
Malik, A.3
Wolski, E.4
Eickhoff, H.5
Lehrach, H.6
Herzel, H.7
-
237
-
-
0000411660
-
New developments in pairwise multiple comparisons:Some powerful and practicable procedures
-
Seaman MA, Levin KR, Serlin RC. New developments in pairwise multiple comparisons:Some powerful and practicable procedures. Psychol Bull 1991;110:577-586.
-
(1991)
Psychol Bull
, vol.110
, pp. 577-586
-
-
Seaman, M.A.1
Levin, K.R.2
Serlin, R.C.3
-
239
-
-
84947402121
-
Rectangular confidence regions for the means of multivariate normal distributions
-
Sidak Z. Rectangular confidence regions for the means of multivariate normal distributions. J Am Stat Assoc 1967;62:626-633.
-
(1967)
J Am Stat Assoc
, vol.62
, pp. 626-633
-
-
Sidak, Z.1
-
240
-
-
0036899286
-
From patterns to pathways: gene expression data analysis comes of age
-
Slonim DK. From patterns to pathways: gene expression data analysis comes of age. Nat Genet 2002;32:502-508.
-
(2002)
Nat Genet
, vol.32
, pp. 502-508
-
-
Slonim, D.K.1
-
241
-
-
0033726346
-
Class prediction and discovery using gene expression data
-
Proceedings of RECOMB IV
-
Slonim DK, Tamayo P, Mesirov JP, Golub TR, Lander ES. Class prediction and discovery using gene expression data. Proceedings of RECOMB IV; 2000. p 263-271.
-
(2000)
, pp. 263-271
-
-
Slonim, D.K.1
Tamayo, P.2
Mesirov, J.P.3
Golub, T.R.4
Lander, E.S.5
-
242
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth GK. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004;3(1):Article 3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, Issue.1
-
-
Smyth, G.K.1
-
243
-
-
33644872577
-
Limma: linear models for microarray data
-
Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors, New York: Springer-Verlag
-
Smyth GK. Limma: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W, editors. Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer-Verlag; 2005. p 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
244
-
-
0000825481
-
A statistical method for evaluating systematic relationships
-
Sokal RR, Michener CD. A statistical method for evaluating systematic relationships. Univ Kansas Sci Bull 1958;38:1409-1438.
-
(1958)
Univ Kansas Sci Bull
, vol.38
, pp. 1409-1438
-
-
Sokal, R.R.1
Michener, C.D.2
-
245
-
-
0010930398
-
The Detection of Interaction Effects, Survey Research Center
-
Monograph No. 35, Ann Arbor: Institute for Social Research, University of Michigan
-
Sonquist JA, Morgan JN. The Detection of Interaction Effects, Survey Research Center, Monograph No. 35, Ann Arbor: Institute for Social Research, University of Michigan; 1964.
-
(1964)
-
-
Sonquist, J.A.1
Morgan, J.N.2
-
246
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van De Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Lonning PE, Borresen-Dale AL. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci U S A 2001;98:10869-10874.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
van De Rijn, M.9
Jeffrey, S.S.10
Thorsen, T.11
Quist, H.12
Matese, J.C.13
Brown, P.O.14
Botstein, D.15
Lonning, P.E.16
Borresen-Dale, A.L.17
-
247
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 1998;9:3273-3297.
-
(1998)
Mol Biol Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
248
-
-
0003625204
-
The positive False Discovery Rate: a Bayesian interpretation and the q-value
-
Technical Report of the Stanford University Department of Statistics
-
Storey JD. The positive False Discovery Rate: a Bayesian interpretation and the q-value. Technical Report of the Stanford University Department of Statistics; 2001.
-
(2001)
-
-
Storey, J.D.1
-
249
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey JD. A direct approach to false discovery rates. J R Stat Soc [Ser B] 2002;64:479-498.
-
(2002)
J R Stat Soc [Ser B]
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
250
-
-
0003670427
-
Estimating false discovery rates under dependence, with applications to DNA microarrays
-
Technical Report of the Stanford University Department of Statistics
-
Storey JD, Tibshirani R. Estimating false discovery rates under dependence, with applications to DNA microarrays. Technical Report of the Stanford University Department of Statistics; 2001.
-
(2001)
-
-
Storey, J.D.1
Tibshirani, R.2
-
252
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005;102:15545-15550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
253
-
-
0031575030
-
Edgeworth approximation to the distribution of the sample mean under simple random sampling
-
Sugden RA, Smith TMF. Edgeworth approximation to the distribution of the sample mean under simple random sampling. Stat Probab Lett 1997;34:293-299;
-
(1997)
Stat Probab Lett
, vol.34
, pp. 293-299
-
-
Sugden, R.A.1
Smith, T.M.F.2
-
255
-
-
60849119837
-
CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data
-
Slawski M, Daumer M, Boulesteix AL. CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data. BMC Bioinformatics 2008.
-
(2008)
BMC Bioinformatics
-
-
Slawski, M.1
Daumer, M.2
Boulesteix, A.L.3
-
256
-
-
36448929060
-
Gene selection: filtering microarray probesets based on probe level consistency
-
Talloen W, Clevert D, Hochreiter S, Amaratunga D, Bijnens L, Kass S, and Göhlmann H. Gene selection: filtering microarray probesets based on probe level consistency. Bioinformatics 2007;23:2897-2902.
-
(2007)
Bioinformatics
, vol.23
, pp. 2897-2902
-
-
Talloen, W.1
Clevert, D.2
Hochreiter, S.3
Amaratunga, D.4
Bijnens, L.5
Kass, S.6
Göhlmann, H.7
-
257
-
-
78650528195
-
Filtering data from high-throughput experiments based on measurement reliability
-
Talloen W, Hochreiter S, Bijnens L, Kasim A, Shkedy Z, Amaratunga D, Gahlmann H. Filtering data from high-throughput experiments based on measurement reliability. Proc Natl Acad Sci U S A 2010;107(46):E173-E174.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.46
, pp. E173-E174
-
-
Talloen, W.1
Hochreiter, S.2
Bijnens, L.3
Kasim, A.4
Shkedy, Z.5
Amaratunga, D.6
Gahlmann, H.7
-
258
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
-
Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci U S A 1999;96:2907-2912.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
259
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM. Systematic determination of genetic network architecture. Nat Genet 1999;22:281-285.
-
(1999)
Nat Genet
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
260
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat Genet 2000;25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
-
261
-
-
0036126860
-
Sharpening spots: correcting for bleedover in cDNA array images
-
Therneau T, Tschumper RC, Jelinek D. Sharpening spots: correcting for bleedover in cDNA array images. Math Biosci 2002;176:1-15.
-
(2002)
Math Biosci
, vol.176
, pp. 1-15
-
-
Therneau, T.1
Tschumper, R.C.2
Jelinek, D.3
-
262
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani R. Regression shrinkage and selection via the lasso. J R Stat Soc [Ser B] 1996;58(1):267-288.
-
(1996)
J R Stat Soc [Ser B]
, vol.58
, Issue.1
, pp. 267-288
-
-
Tibshirani, R.1
-
263
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani R, Hastie T, Narasiman B, Chu G. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci U S A 2002;99:6567-6572.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasiman, B.3
Chu, G.4
-
264
-
-
0036375446
-
Exploratory screening of genes and clusters from microarray experiments
-
Tibshirani R, Hastie T, Narasimhan B, Eisen M, Sherlock G, Brown P, Botstein D. Exploratory screening of genes and clusters from microarray experiments. Stat Sin 2002;12:47-60.
-
(2002)
Stat Sin
, vol.12
, pp. 47-60
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Eisen, M.4
Sherlock, G.5
Brown, P.6
Botstein, D.7
-
265
-
-
0012452913
-
Cluster validation by prediction strength
-
Technical Report of the Stanford University Department of Statistics
-
Tibshirani R, Walther G, Botstein D, Brown P. Cluster validation by prediction strength. Technical Report of the Stanford University Department of Statistics; 2001.
-
(2001)
-
-
Tibshirani, R.1
Walther, G.2
Botstein, D.3
Brown, P.4
-
266
-
-
0035532141
-
Estimating the number of clusters in a dataset via the gap statistic
-
Tibshirani R, Walther G, Hastie T. Estimating the number of clusters in a dataset via the gap statistic. J R Stat Soc [Ser B] 2001;64:411-423.
-
(2001)
J R Stat Soc [Ser B]
, vol.64
, pp. 411-423
-
-
Tibshirani, R.1
Walther, G.2
Hastie, T.3
-
267
-
-
0042863923
-
Analysis of gene expression data using self-organizing maps
-
Toronen P, Kolehmainen M, Wong G, Castren E. Analysis of gene expression data using self-organizing maps. FEBS Lett 1999;451:142-146.
-
(1999)
FEBS Lett
, vol.451
, pp. 142-146
-
-
Toronen, P.1
Kolehmainen, M.2
Wong, G.3
Castren, E.4
-
270
-
-
0035875553
-
Issues in cDNA microarray analysis:quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH. Issues in cDNA microarray analysis:quality filtering, channel normalization, models of variations and assessment of gene effects. Nucl Acids Res 2001;29:2549-2557.
-
(2001)
Nucl Acids Res
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
271
-
-
0002331280
-
The future of data analysis
-
Tukey JW. The future of data analysis. Ann Math Stat 1962;33:1-67.
-
(1962)
Ann Math Stat
, vol.33
, pp. 1-67
-
-
Tukey, J.W.1
-
273
-
-
0001793787
-
We need both exploratory and confirmatory
-
Tukey JW. We need both exploratory and confirmatory. Am Stat 1980;34:23-25.
-
(1980)
Am Stat
, vol.34
, pp. 23-25
-
-
Tukey, J.W.1
-
274
-
-
0039457183
-
The Collected Works of John W
-
Jones LV, editor, Pacific Grove (CA): Wadsworth and Brooks/Cole
-
Tukey JW. The Collected Works of John W. In: Jones LV, editor. Tukey: Philosophy and Principles of Data Analysis 1949-1964. Volume 3. Pacific Grove (CA): Wadsworth and Brooks/Cole; 1986.
-
(1986)
Tukey: Philosophy and Principles of Data Analysis 1949-1964
, vol.3
-
-
Tukey, J.W.1
-
275
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001;98:5116-5121.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
276
-
-
0000217080
-
Gene expression analysis with the parametric bootstrap
-
Van Der Laan MJ, Bryan J. Gene expression analysis with the parametric bootstrap. Biostatistics 2001;2:445-461.
-
(2001)
Biostatistics
, vol.2
, pp. 445-461
-
-
Van Der Laan, M.J.1
Bryan, J.2
-
278
-
-
0035021993
-
Bioinformatics needs to adopt statistical thinking
-
Vingron M. Bioinformatics needs to adopt statistical thinking. Bioinformatics 2001;17:389-390.
-
(2001)
Bioinformatics
, vol.17
, pp. 389-390
-
-
Vingron, M.1
-
279
-
-
0033452362
-
Prediction of gene function by genome-scale expression analysis: prostate cancer-associated genes
-
Walker MG, Volkmuth W, Sprinzak E, Hodgson D, Klingler T. Prediction of gene function by genome-scale expression analysis: prostate cancer-associated genes. Genome Res 1999;9:1198-1203.
-
(1999)
Genome Res
, vol.9
, pp. 1198-1203
-
-
Walker, M.G.1
Volkmuth, W.2
Sprinzak, E.3
Hodgson, D.4
Klingler, T.5
-
280
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward JH. Hierarchical grouping to optimize an objective function. J Am Stat Assoc 1963;58:236-244.
-
(1963)
J Am Stat Assoc
, vol.58
, pp. 236-244
-
-
Ward, J.H.1
-
281
-
-
0035433128
-
Quantitative quality control in microarray image processing and data acquisition
-
Wang X, Ghosh S, Guo SW. Quantitative quality control in microarray image processing and data acquisition. Nucl Acids Res 2001;29:e75.
-
(2001)
Nucl Acids Res
, vol.29
, pp. e75
-
-
Wang, X.1
Ghosh, S.2
Guo, S.W.3
-
285
-
-
0015025451
-
A test for differences between treatment means when several dose levels are compared with a zero dose control
-
Williams DA. A test for differences between treatment means when several dose levels are compared with a zero dose control. Biometrics 1971;27:103-117.
-
(1971)
Biometrics
, vol.27
, pp. 103-117
-
-
Williams, D.A.1
-
286
-
-
0015357959
-
The comparison of several dose levels with a zero dose control
-
Williams DA. The comparison of several dose levels with a zero dose control. Biometrics 1972;28:519-531.
-
(1972)
Biometrics
, vol.28
, pp. 519-531
-
-
Williams, D.A.1
-
287
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS. Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol 2001;8:625-637.
-
(2001)
J Comput Biol
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
288
-
-
0347994074
-
Graphical exploration of gene expression data: a comparative study of three multivariate methods
-
Wouters L, Gohlmann HW, Bijnens L, Molenberghs G, Lewi PJ. Graphical exploration of gene expression data: a comparative study of three multivariate methods. Biometrics 2003;59:1131-1139.
-
(2003)
Biometrics
, vol.59
, pp. 1131-1139
-
-
Wouters, L.1
Gohlmann, H.W.2
Bijnens, L.3
Molenberghs, G.4
Lewi, P.J.5
-
289
-
-
0003576795
-
Comparison of methods for image analysis on cDNA microarray data
-
Technical Report of the Department of Statistics, University of California at Berkeley
-
Yang YH, Buckley MJ, Dudoit S, Speed TP. Comparison of methods for image analysis on cDNA microarray data. Technical Report of the Department of Statistics, University of California at Berkeley; 2000.
-
(2000)
-
-
Yang, Y.H.1
Buckley, M.J.2
Dudoit, S.3
Speed, T.P.4
-
291
-
-
0002853255
-
Normalization for cDNA microarray data
-
Bittner ML, Chen Y, Dorsel AN, Dougherty ER, editors, Proceedings of SPIE
-
Yang YH, Dudoit S, Lu P, Speed TP. Normalization for cDNA microarray data. In:Bittner ML, Chen Y, Dorsel AN, Dougherty ER, editors. Microarrays: Optical Technologies and Informatics. Volume 466. Proceedings of SPIE; 2001.
-
(2001)
Microarrays: Optical Technologies and Informatics
, vol.466
-
-
Yang, Y.H.1
Dudoit, S.2
Lu, P.3
Speed, T.P.4
-
292
-
-
1342294092
-
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Lu P, Lin DM, Peng V, Ngai J, Speed TP. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucl Acids Res 2002;30(4):e15.
-
(2002)
Nucl Acids Res
, vol.30
, Issue.4
, pp. e15
-
-
Yang, Y.H.1
Dudoit, S.2
Lu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
293
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang YH, Speed T. Design issues for cDNA microarray experiments. Nat Rev Genet 2002;3:579-588.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
294
-
-
0000060617
-
Molecular classification of multiple tumor types
-
Yeang CH, Ramaswamy S, Tamayo P, Mukherjee S, Rifkin RM, Angelo M, Reich M, Lander ES, Mesirov J, Golub T. Molecular classification of multiple tumor types. Bioinformatics 2001;17:S316-S322.
-
(2001)
Bioinformatics
, vol.17
, pp. S316-S322
-
-
Yeang, C.H.1
Ramaswamy, S.2
Tamayo, P.3
Mukherjee, S.4
Rifkin, R.M.5
Angelo, M.6
Reich, M.7
Lander, E.S.8
Mesirov, J.9
Golub, T.10
-
295
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
Yeung KY, Fraley C, Murua A, Raftery AE, Ruzzo WL. Model-based clustering and data transformations for gene expression data. Bioinformatics 2001;17:977-987.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
-
297
-
-
0034800371
-
Principal component analysis for clustering gene expression data
-
Yeung KY, Ruzzo WL. Principal component analysis for clustering gene expression data. Bioinformatics 2001;17:763-774.
-
(2001)
Bioinformatics
, vol.17
, pp. 763-774
-
-
Yeung, K.Y.1
Ruzzo, W.L.2
-
298
-
-
0033472709
-
Resampling based false discovery rate controlling multiple test procedures for correlated test statistics
-
Yuketieli D, Benjamini Y. Resampling based false discovery rate controlling multiple test procedures for correlated test statistics. J Stat Plann Inference 1999;82:171-196.
-
(1999)
J Stat Plann Inference
, vol.82
, pp. 171-196
-
-
Yuketieli, D.1
Benjamini, Y.2
-
299
-
-
0035810997
-
Recursive partitioning for tumor classification with gene expression microarray data
-
Zhang H, Yu CY, Singer B, Xiong M. Recursive partitioning for tumor classification with gene expression microarray data. Proc Natl Acad Sci U S A 2001;98:6730-6735.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 6730-6735
-
-
Zhang, H.1
Yu, C.Y.2
Singer, B.3
Xiong, M.4
-
300
-
-
84926405157
-
Identifying differentially expressed genes for class prediction using classification error and gene clustering
-
Unpublished
-
Zhang X, Amaratunga D, Roeder K. Identifying differentially expressed genes for class prediction using classification error and gene clustering. Unpublished; 2002.
-
(2002)
-
-
Zhang, X.1
Amaratunga, D.2
Roeder, K.3
-
301
-
-
16244401458
-
Regularization and variable selection via the elastic net
-
Zou H, Hastie T. Regularization and variable selection via the elastic net. J R Stat Soc [Ser B] 2005;67(2):301-320.
-
(2005)
J R Stat Soc [Ser B]
, vol.67
, Issue.2
, pp. 301-320
-
-
Zou, H.1
Hastie, T.2
|