Contrast normalization of oligonucleotide arrays

Journal of Computational Biology

Volumn 10, Issue 1, 2003, Pages 95-102

  Åstrand, Magnus ^a  

^a ASTRAZENECA R AND D   (Sweden)

Author keywords

Curve fitting; Loess; Normalize; Oligonucleotide array; Orthogonal

Indexed keywords

MESSENGER RNA;

ARTICLE; CALCULATION; COMPARATIVE STUDY; COMPUTER PROGRAM; CURVE FITTING; DENSITY; DNA MICROARRAY; DNA SEQUENCE; GENE SEQUENCE; MATHEMATICAL ANALYSIS; NONLINEAR SYSTEM; PRIORITY JOURNAL; PROTEIN EXPRESSION; TECHNIQUE;

ALGORITHMS; GENE EXPRESSION PROFILING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; QUALITY CONTROL; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA;

EID: 0037225727     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/106652703763255697     Document Type: Article

References (6)

1. Bolstad, B., Irizarry, R., Åstrand, M., and Speed, T. 2002. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. (To appear).
2. Chambers, J.M., and Hastie, T.J. 1997. Statistical models in S., Chapman and Hall.
3. Irizarry, R., Gautier, L., and Cope, L. 2003. An R package for analyses of affymetrix oligonucleotide arrays. In Parmigiani, G., Garrett, E.S., Irizarry, R.A., and Zeger, S.L., eds., The Analysis of Gene Expression Data: Methods and Software, Springer, New York. (To appear).
4. Irizarry, R.A., Hobbs, B., Collin, F., Beazer-Barclay, Y.D., Antonellis, K.J., Scherf, U., and Speed, T.P. 2002. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. (To appear).
5. Li, C., and Wong, W.H. 2001a. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad. Sci. 98(1), 31-36.
6. Li, C., and Wong, W.H. 2001b. Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biol., 2(8), research 0032.1-0032.11.