Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

Journal of Cellular Biochemistry

Volumn 84, Issue SUPPL. 37, 2001, Pages 120-125

  Schadt, Eric E ^a,d   Li, Cheng ^b   Ellis, Byron ^c   Wong, Wing H ^a,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b HARVARD UNIVERSITY   (United States)

^c HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^d Departments of Informatics Rosetta Inpharmatics   (United States)

Author keywords

Feature extraction; Gene expression; Normalization; Oligonucleotide array

Indexed keywords

DNA; OLIGONUCLEOTIDE;

ALGORITHM; COMPUTER PROGRAM; CONFERENCE PAPER; DNA MICROARRAY; GENE EXPRESSION; GENE ISOLATION; PRIORITY JOURNAL; ARTICLE; COMPARATIVE STUDY; GENE EXPRESSION PROFILING; METHODOLOGY; REPRODUCIBILITY;

ALGORITHMS; GENE EXPRESSION PROFILING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; SOFTWARE;

EID: 0035752668     PISSN: 07302312     EISSN: None     Source Type: Journal    
DOI: 10.1002/jcb.10073     Document Type: Conference Paper

References (17)

1. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues by oligonucleotide arrays
2. Ratio-based decisions and the quantitative analysis of cDNA microarray images
3. Cluster analysis and display of genome-wide expression patterns
4. Data management and analysis for gene expression arrays
5. Molecular classification of cancer class discovery and class prediction by gene expression monitoring
6. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
7. Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
8. High density synthetic oligonucleotide arrays
9. Expression monitoring by hybridization to high-density oligonucleotide arrays
10. A high-density probe array sample preparation method using 10- to 100-fold fewer cells
11. Analyzing high-density oligonucleotide gene expression array data
12. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
13. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
14. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
15. Genome-wide expression monitoring in Saccharomyces cerevisiae
16. Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays