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Volumn 29, Issue 7, 2015, Pages 718-731

Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span

Author keywords

Aging; Epigenetics; Gene expression; H3K36me3; met 1

Indexed keywords

HISTONE H3; LYSINE; MESSENGER RNA; METHYLTRANSFERASE; HISTONE;

EID: 84926361022     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.254144.114     Document Type: Article
Times cited : (104)

References (75)
  • 1
    • 34548577025 scopus 로고    scopus 로고
    • Two C. elegans histone methyltransferases repress lin-3 EGF transcription to inhibit vulval development
    • Andersen EC, Horvitz HR. 2007. Two C. elegans histone methyltransferases repress lin-3 EGF transcription to inhibit vulval development. Development 134: 2991-2999.
    • (2007) Development , vol.134 , pp. 2991-2999
    • Andersen, E.C.1    Horvitz, H.R.2
  • 3
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S. 1974. The genetics of Caenorhabditis elegans. Genetics 77: 71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 7
    • 34247569105 scopus 로고    scopus 로고
    • Lifespan regulation by evolutionarily conserved genes essential for viability
    • Curran SP, Ruvkun G. 2007. Lifespan regulation by evolutionarily conserved genes essential for viability. PLoS Genet 3: e56.
    • (2007) PLoS Genet , vol.3
    • Curran, S.P.1    Ruvkun, G.2
  • 10
    • 63549135460 scopus 로고    scopus 로고
    • Meta-analysis of age-related gene expression profiles identifies common signatures of aging
    • de Magalhaes JP, Curado J, Church GM. 2009. Meta-analysis of age-related gene expression profiles identifies common signatures of aging. Bioinformatics 25: 875-881.
    • (2009) Bioinformatics , vol.25 , pp. 875-881
    • de Magalhaes, J.P.1    Curado, J.2    Church, G.M.3
  • 11
    • 38549139593 scopus 로고    scopus 로고
    • Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation
    • Edmunds JW, Mahadevan LC, Clayton AL. 2008. Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation. EMBO J 27: 406-420.
    • (2008) EMBO J , vol.27 , pp. 406-420
    • Edmunds, J.W.1    Mahadevan, L.C.2    Clayton, A.L.3
  • 12
    • 33847284814 scopus 로고    scopus 로고
    • X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation
    • Ercan S, Giresi PG, Whittle CM, Zhang X, Green RD, Lieb JD. 2007. X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation. Nat Genet 39: 403-408.
    • (2007) Nat Genet , vol.39 , pp. 403-408
    • Ercan, S.1    Giresi, P.G.2    Whittle, C.M.3    Zhang, X.4    Green, R.D.5    Lieb, J.D.6
  • 13
    • 79959836522 scopus 로고    scopus 로고
    • Chromatin structure as a mediator of aging
    • Feser J, Tyler J. 2011. Chromatin structure as a mediator of aging. FEBS Lett 585: 2041-2048.
    • (2011) FEBS Lett , vol.585 , pp. 2041-2048
    • Feser, J.1    Tyler, J.2
  • 17
    • 38449111466 scopus 로고    scopus 로고
    • Gene expression changes associated with aging in C. elegans
    • Golden TR, Melov S. 2007. Gene expression changes associated with aging in C. elegans. WormBook 1-12.
    • (2007) WormBook , pp. 1-12
    • Golden, T.R.1    Melov, S.2
  • 21
    • 0038740693 scopus 로고    scopus 로고
    • Tails of intrigue: Phosphorylation of RNA polymerase II mediates histone methylation
    • Hampsey M, Reinberg D. 2003. Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation. Cell 113: 429-432.
    • (2003) Cell , vol.113 , pp. 429-432
    • Hampsey, M.1    Reinberg, D.2
  • 23
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 24
    • 51549096735 scopus 로고    scopus 로고
    • Transcriptome-wide assessment of human brain and lymphocyte senescence
    • Hong MG, Myers AJ, Magnusson PK, Prince JA. 2008. Transcriptome-wide assessment of human brain and lymphocyte senescence. PLoS One 3: e3024.
    • (2008) PLoS One , vol.3
    • Hong, M.G.1    Myers, A.J.2    Magnusson, P.K.3    Prince, J.A.4
  • 25
    • 84886111619 scopus 로고    scopus 로고
    • DNAmethylation age of human tissues and cell types
    • Horvath S. 2013.DNAmethylation age of human tissues and cell types. Genome Biol 14: R115.
    • (2013) Genome Biol , vol.14
    • Horvath, S.1
  • 26
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • HuangDW, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 27
    • 79960936857 scopus 로고    scopus 로고
    • Histone demethylase UTX-1 regulates C. elegans life span by targeting the insulin/IGF-1 signaling pathway
    • Jin C, Li J, Green CD, Yu X, Tang X, Han D, Xian B, Wang D, Huang X, Cao X, et al. 2011. Histone demethylase UTX-1 regulates C. elegans life span by targeting the insulin/IGF-1 signaling pathway. Cell Metab 14: 161-172.
    • (2011) Cell Metab , vol.14 , pp. 161-172
    • Jin, C.1    Li, J.2    Green, C.D.3    Yu, X.4    Tang, X.5    Han, D.6    Xian, B.7    Wang, D.8    Huang, X.9    Cao, X.10
  • 28
    • 84867810635 scopus 로고    scopus 로고
    • MicroRNA in aging: From discovery to biology
    • Jung HJ, Suh Y. 2012. MicroRNA in aging: from discovery to biology. Curr Genomics 13: 548-557.
    • (2012) Curr Genomics , vol.13 , pp. 548-557
    • Jung, H.J.1    Suh, Y.2
  • 29
    • 0038725897 scopus 로고    scopus 로고
    • Genome-wide RNAi screening in Caenorhabditis elegans
    • Kamath RS, Ahringer J. 2003. Genome-wide RNAi screening in Caenorhabditis elegans. Methods 30: 313-321.
    • (2003) Methods , vol.30 , pp. 313-321
    • Kamath, R.S.1    Ahringer, J.2
  • 30
    • 0035942222 scopus 로고    scopus 로고
    • Influences of aging and caloric restriction on the transcriptional profile of skeletal muscle from rhesus monkeys
    • Kayo T, Allison DB, Weindruch R, Prolla TA. 2001. Influences of aging and caloric restriction on the transcriptional profile of skeletal muscle from rhesus monkeys. Proc Natl Acad Sci 98: 5093-5098.
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 5093-5098
    • Kayo, T.1    Allison, D.B.2    Weindruch, R.3    Prolla, T.A.4
  • 31
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIP-seq experiments for DNA-binding proteins
    • Kharchenko PV, TolstorukovMY, Park PJ. 2008. Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol 26: 1351-1359.
    • (2008) Nat Biotechnol , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1    Tolstorukov, M.Y.2    Park, P.J.3
  • 32
    • 0032831936 scopus 로고    scopus 로고
    • Modulation of life-span by histone deacetylase genes in Saccharomyces cerevisiae
    • Kim S, Benguria A, Lai CY, Jazwinski SM. 1999. Modulation of life-span by histone deacetylase genes in Saccharomyces cerevisiae. Mol Biol Cell 10: 3125-3136.
    • (1999) Mol Biol Cell , vol.10 , pp. 3125-3136
    • Kim, S.1    Benguria, A.2    Lai, C.Y.3    Jazwinski, S.M.4
  • 33
    • 80052020631 scopus 로고    scopus 로고
    • Pre-mRNA splicing is a determinant of histone H3K36 methylation
    • Kim S, Kim H, Fong N, Erickson B, Bentley DL. 2011. Pre-mRNA splicing is a determinant of histone H3K36 methylation. Proc Natl Acad Sci 108: 13564-13569.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 13564-13569
    • Kim, S.1    Kim, H.2    Fong, N.3    Erickson, B.4    Bentley, D.L.5
  • 35
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T. 2007. Chromatin modifications and their function. Cell 128: 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 36
    • 84879288762 scopus 로고    scopus 로고
    • Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation
    • Kruesi WS, Core LJ, WatersCT, Lis JT, Meyer BJ. 2013. Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. eLife 2: e00808.
    • (2013) eLife , vol.2
    • Kruesi, W.S.1    Core, L.J.2    Waters, C.T.3    Lis, J.T.4    Meyer, B.J.5
  • 37
    • 84894254592 scopus 로고    scopus 로고
    • Proteostasis and longevity: When does aging really begin?
    • Labbadia J, Morimoto RI. 2014. Proteostasis and longevity: when does aging really begin? F1000prime Rep 6: 7.
    • (2014) F1000prime Rep , vol.6 , pp. 7
    • Labbadia, J.1    Morimoto, R.I.2
  • 39
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 40
    • 0033610079 scopus 로고    scopus 로고
    • Gene expression profile of aging and its retardation by caloric restriction
    • Lee CK, Klopp RG, Weindruch R, Prolla TA. 1999. Gene expression profile of aging and its retardation by caloric restriction. Science 285: 1390-1393.
    • (1999) Science , vol.285 , pp. 1390-1393
    • Lee, C.K.1    Klopp, R.G.2    Weindruch, R.3    Prolla, T.A.4
  • 41
    • 0000847978 scopus 로고    scopus 로고
    • Gene-expression profile of the ageing brain in mice
    • Lee CK, Weindruch R, Prolla TA. 2000. Gene-expression profile of the ageing brain in mice. Nat Genet 25: 294-297.
    • (2000) Nat Genet , vol.25 , pp. 294-297
    • Lee, C.K.1    Weindruch, R.2    Prolla, T.A.3
  • 42
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 43
    • 34249874030 scopus 로고    scopus 로고
    • Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
    • Li B, Gogol M, Carey M, Pattenden SG, Seidel C, Workman JL. 2007. Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes Dev 21: 1422-1430.
    • (2007) Genes Dev , vol.21 , pp. 1422-1430
    • Li, B.1    Gogol, M.2    Carey, M.3    Pattenden, S.G.4    Seidel, C.5    Workman, J.L.6
  • 45
    • 84876943255 scopus 로고    scopus 로고
    • The histone mark H3K36me3 regulates human DNA mismatch repair through its interaction with MutSα
    • Li F, Mao G, Tong D, Huang J, Gu L, Yang W, Li GM. 2013. The histone mark H3K36me3 regulates human DNA mismatch repair through its interaction with MutSα. Cell 153: 590-600.
    • (2013) Cell , vol.153 , pp. 590-600
    • Li, F.1    Mao, G.2    Tong, D.3    Huang, J.4    Gu, L.5    Yang, W.6    Li, G.M.7
  • 48
    • 81155139577 scopus 로고    scopus 로고
    • The H3K27 demethylase UTX-1 regulates C. elegans lifespan in a germline-independent, insulin-dependent manner
    • Maures TJ, Greer EL, Hauswirth AG, Brunet A. 2011. The H3K27 demethylase UTX-1 regulates C. elegans lifespan in a germline-independent, insulin-dependent manner. Aging Cell 10: 980-990.
    • (2011) Aging Cell , vol.10 , pp. 980-990
    • Maures, T.J.1    Greer, E.L.2    Hauswirth, A.G.3    Brunet, A.4
  • 54
    • 84863654457 scopus 로고    scopus 로고
    • Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
    • Pradeepa MM, Sutherland HG, Ule J, Grimes GR, BickmoreWA. 2012. Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. PLoS Genet 8: e1002717.
    • (2012) PLoS Genet , vol.8
    • Pradeepa, M.M.1    Sutherland, H.G.2    Ule, J.3    Grimes, G.R.4    Bickmore, W.A.5
  • 55
    • 0023506983 scopus 로고
    • The glp-1 locus and cellular interactions in early C. elegans embryos
    • Priess JR, Schnabel H, Schnabel R. 1987. The glp-1 locus and cellular interactions in early C. elegans embryos. Cell 51: 601-611.
    • (1987) Cell , vol.51 , pp. 601-611
    • Priess, J.R.1    Schnabel, H.2    Schnabel, R.3
  • 56
    • 84899493057 scopus 로고    scopus 로고
    • ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
    • Shen L, Shao N, Liu X, Nestler E. 2014. ngs.plot: quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC Genomics 15: 284.
    • (2014) BMC Genomics , vol.15 , pp. 284
    • Shen, L.1    Shao, N.2    Liu, X.3    Nestler, E.4
  • 57
    • 33746324216 scopus 로고    scopus 로고
    • Chromatin modifications by methylation and ubiquitination: Implications in the regulation of gene expression
    • Shilatifard A. 2006. Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu Rev Biochem 75: 243-269.
    • (2006) Annu Rev Biochem , vol.75 , pp. 243-269
    • Shilatifard, A.1
  • 58
    • 76249126432 scopus 로고    scopus 로고
    • Polycomb repressive complex 2 and Trithorax modulate Drosophila longevity and stress resistance
    • Siebold AP, Banerjee R, Tie F, Kiss DL, Moskowitz J, Harte PJ. 2010. Polycomb repressive complex 2 and Trithorax modulate Drosophila longevity and stress resistance. Proc Natl Acad Sci 107: 169-174.
    • (2010) Proc Natl Acad Sci , vol.107 , pp. 169-174
    • Siebold, A.P.1    Banerjee, R.2    Tie, F.3    Kiss, D.L.4    Moskowitz, J.5    Harte, P.J.6
  • 60
    • 84858142662 scopus 로고    scopus 로고
    • MicroRNAs and their roles in aging
    • Smith-Vikos T, Slack FJ. 2012. MicroRNAs and their roles in aging. J Cell Sci 125: 7-17.
    • (2012) J Cell Sci , vol.125 , pp. 7-17
    • Smith-Vikos, T.1    Slack, F.J.2
  • 63
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 67
    • 84856120332 scopus 로고    scopus 로고
    • Understanding the language of Lys36 methylation at histone H3
    • Wagner EJ, Carpenter PB. 2012. Understanding the language of Lys36 methylation at histone H3. Nat Rev Mol Cell Biol 13: 115-126.
    • (2012) Nat Rev Mol Cell Biol , vol.13 , pp. 115-126
    • Wagner, E.J.1    Carpenter, P.B.2
  • 68
  • 69
    • 84864125260 scopus 로고    scopus 로고
    • The aging epigenome: DNA methylation from the cradle to the grave
    • Winnefeld M, Lyko F. 2012. The aging epigenome: DNA methylation from the cradle to the grave. Genome Biol 13: 165.
    • (2012) Genome Biol , vol.13 , pp. 165
    • Winnefeld, M.1    Lyko, F.2
  • 70
    • 84892429004 scopus 로고    scopus 로고
    • Chromatin structure and transposable elements in organismal aging
    • Wood JG, Helfand SL. 2013. Chromatin structure and transposable elements in organismal aging. Front Genet 4: 274.
    • (2013) Front Genet , vol.4 , pp. 274
    • Wood, J.G.1    Helfand, S.L.2
  • 72
    • 84878791690 scopus 로고    scopus 로고
    • Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs
    • Yang Z, Dong D, Zhang Z, Crabbe MJ, Wang L, Zhong Y. 2012. Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs. BMC Genomics 13: S14.
    • (2012) BMC Genomics , vol.13
    • Yang, Z.1    Dong, D.2    Zhang, Z.3    Crabbe, M.J.4    Wang, L.5    Zhong, Y.6
  • 73
    • 79957992660 scopus 로고    scopus 로고
    • A decline in p38 MAPKsignaling underlies immunosenescence in Caenorhabditis elegans
    • Youngman MJ, Rogers ZN, Kim DH. 2011. A decline in p38 MAPKsignaling underlies immunosenescence in Caenorhabditis elegans. PLoS Genet 7: e1002082.
    • (2011) PLoS Genet , vol.7
    • Youngman, M.J.1    Rogers, Z.N.2    Kim, D.H.3
  • 75
    • 0034610286 scopus 로고    scopus 로고
    • Genome-wide study of aging and oxidative stress response in Drosophila melanogaster
    • Zou S, Meadows S, Sharp L, Jan LY, Jan YN. 2000. Genome-wide study of aging and oxidative stress response in Drosophila melanogaster. Proc Natl Acad Sci 97: 13726-13731.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 13726-13731
    • Zou, S.1    Meadows, S.2    Sharp, L.3    Jan, L.Y.4    Jan, Y.N.5


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