-
1
-
-
84871699564
-
Promoter-proximal pausing of RNA polymerase II: Emerging roles in metazoans
-
doi: 10.1038/nrg3293
-
Adelman K, Lis JT. 2012. Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat Rev Genet 13:720-31. doi: 10.1038/nrg3293.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 720-731
-
-
Adelman, K.1
Lis, J.T.2
-
2
-
-
33645530936
-
High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome
-
doi: 10.1101/gad.1400206
-
Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI. 2006. High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev 20:848-57. doi: 10.1101/gad.1400206.
-
(2006)
Genes Dev
, vol.20
, pp. 848-857
-
-
Alekseyenko, A.A.1
Larschan, E.2
Lai, W.R.3
Park, P.J.4
Kuroda, M.I.5
-
3
-
-
78751516220
-
A global analysis of C. elegans trans-splicing
-
doi: 10.1101/gr.113811.110
-
Allen MA, Hillier LW, Waterston RH, Blumenthal T. 2011. A global analysis of C. elegans trans-splicing. Genome Res 21:255-64. doi: 10.1101/gr.113811.110.
-
(2011)
Genome Res
, vol.21
, pp. 255-264
-
-
Allen, M.A.1
Hillier, L.W.2
Waterston, R.H.3
Blumenthal, T.4
-
4
-
-
77958471357
-
Differential expression analysis for sequence count data
-
doi: 10.1186/gb-2010-11-10-r106
-
Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11:R106. doi: 10.1186/gb-2010-11-10-r106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
5
-
-
84877810334
-
Condensin, cohesin and the control of chromatin states
-
doi: 10.1016/j.gde.2012.11.004
-
Aragon L, Martinez-Perez E, Merkenschlager M. 2013. Condensin, cohesin and the control of chromatin states. Curr Opin Genet Dev 23:204-11. doi: 10.1016/j.gde.2012.11.004.
-
(2013)
Curr Opin Genet Dev
, vol.23
, pp. 204-211
-
-
Aragon, L.1
Martinez-Perez, E.2
Merkenschlager, M.3
-
6
-
-
84866150222
-
Condensin II promotes the formation of chromosome territories by inducing axial compaction of polyploid interphase chromosomes
-
doi: 10.1371/journal.pgen.1002873
-
Bauer CR, Hartl TA, Bosco G. 2012. Condensin II promotes the formation of chromosome territories by inducing axial compaction of polyploid interphase chromosomes. PLOS GENET 8:e1002873. doi: 10.1371/journal.pgen.1002873.
-
(2012)
PLOS GENET
, vol.8
-
-
Bauer, C.R.1
Hartl, T.A.2
Bosco, G.3
-
7
-
-
64249139132
-
RNA Pol II accumulates at promoters of growth genes during developmental arrest
-
doi: 10.1126/science.1169628
-
Baugh LR, Demodena J, Sternberg PW. 2009. RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science 324:92-4. doi: 10.1126/science.1169628.
-
(2009)
Science
, vol.324
, pp. 92-94
-
-
Baugh, L.R.1
Demodena, J.2
Sternberg, P.W.3
-
8
-
-
84878146196
-
Trans-splicing and operons in C. elegans
-
doi: 10.1895/wormbook.1.5.2
-
Blumenthal T. 2012. Trans-splicing and operons in C. elegans. WormBook 1-11. doi: 10.1895/wormbook.1.5.2.
-
(2012)
WormBook
, pp. 1-11
-
-
Blumenthal, T.1
-
9
-
-
9444251068
-
Condensin restructures chromosomes in preparation for meiotic divisions
-
doi: 10.1083/jcb.200408061
-
Chan RC, Severson AF, Meyer BJ. 2004. Condensin restructures chromosomes in preparation for meiotic divisions. J Cell Biol 167:613-25. doi: 10.1083/jcb.200408061.
-
(2004)
J Cell Biol
, vol.167
, pp. 613-625
-
-
Chan, R.C.1
Severson, A.F.2
Meyer, B.J.3
-
10
-
-
84879308632
-
The Landscape of RNA Polymerase II Transcription Initiation In C. Elegans Reveals Promoter and Enhancer Architectures
-
advance online publication. doi: 10.1101/gr.153668.112
-
Chen RA, Down TA, Stempor P, Chen QB, Egelhofer TA, Hillier LW, et al. 2013. The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures. Genome Res advance online publication. doi: 10.1101/gr.153668.112.
-
(2013)
Genome Res
-
-
Chen, R.A.1
Down, T.A.2
Stempor, P.3
Chen, Q.B.4
Egelhofer, T.A.5
Hillier, L.W.6
-
11
-
-
0028104856
-
DPY-27: A chromosome condensation protein homolog that regulates C. elegans dosage compensation through association with the X chromosome
-
doi: 10.1016/0092-8674(94)90255-0
-
Chuang PT, Albertson DG, Meyer BJ. 1994. DPY-27: a chromosome condensation protein homolog that regulates C. elegans dosage compensation through association with the X chromosome. Cell 79:459-74. doi: 10.1016/0092-8674(94)90255-0.
-
(1994)
Cell
, vol.79
, pp. 459-474
-
-
Chuang, P.T.1
Albertson, D.G.2
Meyer, B.J.3
-
12
-
-
84855940430
-
Dosage compensation in Drosophila melanogaster: Epigenetic fine-tuning of chromosome-wide transcription
-
doi: 10.1038/nrg3124
-
Conrad T, Akhtar A. 2012. Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription. Nat Rev Genet 13:123-34. doi: 10.1038/nrg3124.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 123-134
-
-
Conrad, T.1
Akhtar, A.2
-
13
-
-
84858207725
-
The MOF chromobarrel domain controls genome-wide H4K16 acetylation and spreading of the MSL complex
-
doi: 10.1016/j. devcel.2011.12.016
-
Conrad T, Cavalli FM, Holz H, Hallacli E, Kind J, Ilik I, et al. 2012a. The MOF chromobarrel domain controls genome-wide H4K16 acetylation and spreading of the MSL complex. Dev Cell 22:610-24. doi: 10.1016/j. devcel.2011.12.016.
-
(2012)
Dev Cell
, vol.22
, pp. 610-624
-
-
Conrad, T.1
Cavalli, F.M.2
Holz, H.3
Hallacli, E.4
Kind, J.5
Ilik, I.6
-
14
-
-
84864837861
-
Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters
-
doi: 10.1126/science.1221428
-
Conrad T, Cavalli FM, Vaquerizas JM, Luscombe NM, Akhtar A. 2012b. Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters. Science 337:742-6. doi: 10.1126/science.1221428.
-
(2012)
Science
, vol.337
, pp. 742-746
-
-
Conrad, T.1
Cavalli, F.M.2
Vaquerizas, J.M.3
Luscombe, N.M.4
Akhtar, A.5
-
15
-
-
84868139307
-
Defining the status of RNA polymerase at promoters
-
doi: 10.1016/j.celrep.2012.08.034
-
Core LJ, Waterfall JJ, Gilchrist DA, Fargo DC, Kwak H, Adelman K, et al. 2012. Defining the status of RNA polymerase at promoters. Cell Rep 2:1025-35. doi: 10.1016/j.celrep.2012.08.034.
-
(2012)
Cell Rep
, vol.2
, pp. 1025-1035
-
-
Core, L.J.1
Waterfall, J.J.2
Gilchrist, D.A.3
Fargo, D.C.4
Kwak, H.5
Adelman, K.6
-
16
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
doi: 10.1126/science.1162228
-
Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-8. doi: 10.1126/science.1162228.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
17
-
-
58149159531
-
Three distinct condensin complexes control C. elegans chromosome dynamics
-
doi: 10.1016/j.cub.2008.12.006
-
Csankovszki G, Collette K, Spahl K, Carey J, Snyder M, Petty E, et al. 2009. Three distinct condensin complexes control C. elegans chromosome dynamics. Curr Biol 19:9-19. doi: 10.1016/j.cub.2008.12.006.
-
(2009)
Curr Biol
, vol.19
, pp. 9-19
-
-
Csankovszki, G.1
Collette, K.2
Spahl, K.3
Carey, J.4
Snyder, M.5
Petty, E.6
-
18
-
-
0033546359
-
Dosage compensation proteins targeted to X chromosomes by a determinant of hermaphrodite fate
-
doi: 10.1126/science.284.5421.1800
-
Dawes HE, Berlin DS, Lapidus DM, Nusbaum C, Davis TL, Meyer BJ. 1999. Dosage compensation proteins targeted to X chromosomes by a determinant of hermaphrodite fate. Science 284:1800-4. doi: 10.1126/science.284.5421.1800.
-
(1999)
Science
, vol.284
, pp. 1800-1804
-
-
Dawes, H.E.1
Berlin, D.S.2
Lapidus, D.M.3
Nusbaum, C.4
Davis, T.L.5
Meyer, B.J.6
-
19
-
-
84876420573
-
Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation
-
doi: 10.1016/j.devcel.2013.01.028
-
Deng X, Berletch JB, Ma W, Nguyen DK, Hiatt JB, Noble WS, et al. 2013. Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation. Dev Cell 25:55-68. doi: 10.1016/j.devcel.2013.01.028.
-
(2013)
Dev Cell
, vol.25
, pp. 55-68
-
-
Deng, X.1
Berletch, J.B.2
Ma, W.3
Nguyen, D.K.4
Hiatt, J.B.5
Noble, W.S.6
-
20
-
-
82255192364
-
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster
-
doi: 10.1038/ng.948
-
Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, et al. 2011. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nat Genet 43:1179-85. doi: 10.1038/ng.948.
-
(2011)
Nat Genet
, vol.43
, pp. 1179-1185
-
-
Deng, X.1
Hiatt, J.B.2
Nguyen, D.K.3
Ercan, S.4
Sturgill, D.5
Hillier, L.W.6
-
21
-
-
84870174108
-
Dosage compensation of the sex chromosomes
-
doi: 10.1146/annurev-genet-110711-155454
-
Disteche CM. 2012. Dosage compensation of the sex chromosomes. Ann Rev Genetics 46:537-60. doi: 10.1146/annurev-genet-110711-155454.
-
(2012)
Ann Rev Genetics
, vol.46
, pp. 537-560
-
-
Disteche, C.M.1
-
22
-
-
71849116882
-
The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence
-
doi: 10.1016/j.cub.2009.09.047
-
Ercan S, Dick LL, Lieb JD. 2009. The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence. Curr Biol 19:1777-87. doi: 10.1016/j.cub.2009.09.047.
-
(2009)
Curr Biol
, vol.19
, pp. 1777-1787
-
-
Ercan, S.1
Dick, L.L.2
Lieb, J.D.3
-
23
-
-
60549115605
-
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs
-
doi: 10.1038/nature07759
-
Fejes-Toth F, Sotirova V, Sachidanandam R, Assaf G, Hannon GJ, Kapranov P, et al. 2009. Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. Nature 457:1028-32. doi: 10.1038/nature07759.
-
(2009)
Nature
, vol.457
, pp. 1028-1032
-
-
Fejes-Toth, F.1
Sotirova, V.2
Sachidanandam, R.3
Assaf, G.4
Hannon, G.J.5
Kapranov, P.6
-
24
-
-
84876343896
-
Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters
-
doi: 10.1126/science.1231815
-
Ferrari F, Jung YL, Kharchenko PV, Plachetka A, Alekseyenko AA, Kuroda MI, et al. 2013. Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters". Science 340:273. doi: 10.1126/science.1231815.
-
(2013)
Science
, vol.340
, pp. 273
-
-
Ferrari, F.1
Jung, Y.L.2
Kharchenko, P.V.3
Plachetka, A.4
Alekseyenko, A.A.5
Kuroda, M.I.6
-
25
-
-
67649206510
-
Drosophila dosage compensation: A complex voyage to the X chromosome
-
doi: 10.1242/dev.029645
-
Gelbart ME, Kuroda MI. 2009. Drosophila dosage compensation: a complex voyage to the X chromosome. Development 136:1399-410. doi: 10.1242/dev.029645.
-
(2009)
Development
, vol.136
, pp. 1399-1410
-
-
Gelbart, M.E.1
Kuroda, M.I.2
-
26
-
-
33645520163
-
Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex
-
doi: 10.1101/gad.1399406
-
Gilfillan GD, Straub T, de Wit E, Greil F, Lamm R, van Steensel B, et al. 2006. Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev 20:858-70. doi: 10.1101/gad.1399406.
-
(2006)
Genes Dev
, vol.20
, pp. 858-870
-
-
Gilfillan, G.D.1
Straub, T.2
de Wit, E.3
Greil, F.4
Lamm, R.5
van Steensel, B.6
-
27
-
-
33646556092
-
Pause sites promote transcriptional termination of mammalian RNA polymerase II
-
doi: 10.1128/mcb.26.10.3986-3996.2006
-
Gromak N, West S, Proudfoot NJ. 2006. Pause sites promote transcriptional termination of mammalian RNA polymerase II. Mol Cell Biol 26:3986-96. doi: 10.1128/mcb.26.10.3986-3996.2006.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 3986-3996
-
-
Gromak, N.1
West, S.2
Proudfoot, N.J.3
-
28
-
-
84871593032
-
CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors
-
doi: 10.1016/j.cell.2012.11.023
-
Gu W, Lee HC, Chaves D, Youngman EM, Pazour GJ, Conte D Jnr, et al. 2012. CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors. Cell 151:1488-500. doi: 10.1016/j.cell.2012.11.023.
-
(2012)
Cell
, vol.151
, pp. 1488-1500
-
-
Gu, W.1
Lee, H.C.2
Chaves, D.3
Youngman, E.M.4
Pazour, G.J.5
Conte Jr., D.6
-
29
-
-
0037087623
-
C. elegans condensin promotes mitotic chromosome architecture, centromere organization, and sister chromatid segregation during mitosis and meiosis
-
doi: 10.1101/gad.968302
-
Hagstrom KA, Holmes VF, Cozzarelli NR, Meyer BJ. 2002. C. elegans condensin promotes mitotic chromosome architecture, centromere organization, and sister chromatid segregation during mitosis and meiosis. Genes Dev 16:729-42. doi: 10.1101/gad.968302.
-
(2002)
Genes Dev
, vol.16
, pp. 729-742
-
-
Hagstrom, K.A.1
Holmes, V.F.2
Cozzarelli, N.R.3
Meyer, B.J.4
-
30
-
-
0030891858
-
mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila
-
doi: 10.1093/emboj/16.8.2054
-
Hilfiker A, Hilfiker-Kleiner D, Pannuti A, Lucchesi JC. 1997. mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila. EMBO J 16:2054-60. doi: 10.1093/emboj/16.8.2054.
-
(1997)
EMBO J
, vol.16
, pp. 2054-2060
-
-
Hilfiker, A.1
Hilfiker-Kleiner, D.2
Pannuti, A.3
Lucchesi, J.C.4
-
31
-
-
84864752050
-
Condensins: Universal organizers of chromosomes with diverse functions
-
doi: 10.1101/gad.194746.112
-
Hirano T. 2012. Condensins: universal organizers of chromosomes with diverse functions. Genes Dev 26:1659-78. doi: 10.1101/gad.194746.112.
-
(2012)
Genes Dev
, vol.26
, pp. 1659-1678
-
-
Hirano, T.1
-
32
-
-
0027943721
-
A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro
-
doi: 10.1016/0092-8674(94)90254-2
-
Hirano T, Mitchison TJ. 1994. A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro. Cell 79:449-58. doi: 10.1016/0092-8674(94)90254-2.
-
(1994)
Cell
, vol.79
, pp. 449-458
-
-
Hirano, T.1
Mitchison, T.J.2
-
33
-
-
77956024408
-
Genome-wide translational profiling by ribosome footprinting
-
doi: 10.1016/s0076-6879(10)70006-9
-
Ingolia NT. 2010. Genome-wide translational profiling by ribosome footprinting. Methods Enzymol 470:119-42. doi: 10.1016/s0076-6879(10)70006-9.
-
(2010)
Methods Enzymol
, vol.470
, pp. 119-142
-
-
Ingolia, N.T.1
-
34
-
-
78650972252
-
Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
-
doi: 10.1038/nature09616
-
Jan CH, Friedman RC, Ruby JG, Bartel DP. 2011. Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs. Nature 469:97-101. doi: 10.1038/nature09616.
-
(2011)
Nature
, vol.469
, pp. 97-101
-
-
Jan, C.H.1
Friedman, R.C.2
Ruby, J.G.3
Bartel, D.P.4
-
35
-
-
61849176032
-
A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome
-
doi: 10.1101/gad.1751109
-
Jans J, Gladden JM, Ralston EJ, Pickle CS, Michel AH, Pferdehirt RR, et al. 2009. A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome. Genes Dev 23:602-18. doi: 10.1101/gad.1751109.
-
(2009)
Genes Dev
, vol.23
, pp. 602-618
-
-
Jans, J.1
Gladden, J.M.2
Ralston, E.J.3
Pickle, C.S.4
Michel, A.H.5
Pferdehirt, R.R.6
-
36
-
-
84862781818
-
New and Xisting regulatory mechanisms of X chromosome inactivation
-
doi: 10.1016/j.gde.2012.02.007
-
Jeon Y, Sarma K, Lee JT. 2012. New and Xisting regulatory mechanisms of X chromosome inactivation. Curr Opin Genet Dev 22:62-71. doi: 10.1016/j.gde.2012.02.007.
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 62-71
-
-
Jeon, Y.1
Sarma, K.2
Lee, J.T.3
-
37
-
-
84874509629
-
Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
-
doi: 10.1186/1471-2164-14-150
-
Jue NK, Murphy MB, Kasowitz SD, Qureshi SM, Obergfell CJ, Elsisi S, et al. 2013. Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach. BMC Genomics 14:150. doi: 10.1186/1471-2164-14-150.
-
(2013)
BMC Genomics
, vol.14
, pp. 150
-
-
Jue, N.K.1
Murphy, M.B.2
Kasowitz, S.D.3
Qureshi, S.M.4
Obergfell, C.J.5
Elsisi, S.6
-
38
-
-
77149174487
-
Regulation of gene expression via the core promoter and the basal transcriptional machinery
-
doi: 10.1016/j.ydbio.2009.08.009
-
Juven-Gershon T, Kadonaga JT. 2010. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Dev Biol 339:225-9. doi: 10.1016/j.ydbio.2009.08.009.
-
(2010)
Dev Biol
, vol.339
, pp. 225-229
-
-
Juven-Gershon, T.1
Kadonaga, J.T.2
-
39
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
doi: 10.1126/science.1138341
-
Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, et al. 2007. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316:1484-8. doi: 10.1126/science.1138341.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
-
40
-
-
0030874421
-
ATP-dependent positive supercoiling of DNA by 13S condensin: A biochemical implication for chromosome condensation
-
doi: 10.1016/S0092-8674(00)80524-3
-
Kimura K, Hirano T. 1997. ATP-dependent positive supercoiling of DNA by 13S condensin: a biochemical implication for chromosome condensation. Cell 90:625-34. doi: 10.1016/S0092-8674(00)80524-3.
-
(1997)
Cell
, vol.90
, pp. 625-634
-
-
Kimura, K.1
Hirano, T.2
-
41
-
-
84874175008
-
Precise maps of RNA polymerase reveal how promoters direct initiation and pausing
-
doi: 10.1126/science.1229386
-
Kwak H, Fuda NJ, Core LJ, Lis JT. 2013. Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science 339:950-3. doi: 10.1126/science.1229386.
-
(2013)
Science
, vol.339
, pp. 950-953
-
-
Kwak, H.1
Fuda, N.J.2
Core, L.J.3
Lis, J.T.4
-
42
-
-
79952259260
-
X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila
-
doi: 10.1038/nature09757
-
Larschan E, Bishop EP, Kharchenko PV, Core LJ, Lis JT, Park PJ, et al. 2011. X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature 471:115-8. doi: 10.1038/nature09757.
-
(2011)
Nature
, vol.471
, pp. 115-118
-
-
Larschan, E.1
Bishop, E.P.2
Kharchenko, P.V.3
Core, L.J.4
Lis, J.T.5
Park, P.J.6
-
43
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
doi: 10.1126/science.1065062
-
Lau NC, Lim LP, Weinstein EG, Bartel DP. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294:858-62. doi: 10.1126/science.1065062.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
44
-
-
62749132272
-
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
-
doi: 10.1186/1471-2164-10-37
-
Lefrancois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, et al. 2009. Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing. BMC Genomics 10:37. doi: 10.1186/1471-2164-10-37.
-
(2009)
BMC Genomics
, vol.10
, pp. 37
-
-
Lefrancois, P.1
Euskirchen, G.M.2
Auerbach, R.K.3
Rozowsky, J.4
Gibson, T.5
Yellman, C.M.6
-
45
-
-
33645516399
-
X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila
-
doi: 10.1101/gad.377506
-
Legube G, McWeeney SK, Lercher MJ, Akhtar A. 2006. X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila. Genes Dev 20:871-83. doi: 10.1101/gad.377506.
-
(2006)
Genes Dev
, vol.20
, pp. 871-883
-
-
Legube, G.1
McWeeney, S.K.2
Lercher, M.J.3
Akhtar, A.4
-
46
-
-
84863955476
-
Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation
-
doi: 10.1073/pnas.1201816109
-
Lin F, Xing K, Zhang J, He X. 2012. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proc Natl Acad Sci USA 109:11752-7. doi: 10.1073/pnas.1201816109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 11752-11757
-
-
Lin, F.1
Xing, K.2
Zhang, J.3
He, X.4
-
47
-
-
77954847055
-
The landscape of C. elegans 3'UTRs
-
doi: 10.1126/science.1191244
-
Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak SD, et al. 2010. The landscape of C. elegans 3'UTRs. Science 329:432-5. doi: 10.1126/science.1191244.
-
(2010)
Science
, vol.329
, pp. 432-435
-
-
Mangone, M.1
Manoharan, A.P.2
Thierry-Mieg, D.3
Thierry-Mieg, J.4
Han, T.5
Mackowiak, S.D.6
-
48
-
-
84867152375
-
Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans
-
doi: 10.1101/gr.133587.111
-
Maxwell CS, Antoshechkin I, Kurhanewicz N, Belsky JA, Baugh LR. 2012. Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans. Genome Res 22:1920-9. doi: 10.1101/gr.133587.111.
-
(2012)
Genome Res
, vol.22
, pp. 1920-1929
-
-
Maxwell, C.S.1
Antoshechkin, I.2
Kurhanewicz, N.3
Belsky, J.A.4
Baugh, L.R.5
-
49
-
-
70349464655
-
Condensins regulate meiotic DNA break distribution, thus crossover frequency, by controlling chromosome structure
-
doi: 10.1016/j.cell.2009.07.035
-
Mets DG, Meyer BJ. 2009. Condensins regulate meiotic DNA break distribution, thus crossover frequency, by controlling chromosome structure. Cell 139:73-86. doi: 10.1016/j.cell.2009.07.035.
-
(2009)
Cell
, vol.139
, pp. 73-86
-
-
Mets, D.G.1
Meyer, B.J.2
-
50
-
-
77952240927
-
Targeting X chromosomes for repression
-
doi: 10.1016/j. gde.2010.03.008
-
Meyer BJ. 2010. Targeting X chromosomes for repression. Curr Opin Genet Dev 20:179-89. doi: 10.1016/j. gde.2010.03.008.
-
(2010)
Curr Opin Genet Dev
, vol.20
, pp. 179-189
-
-
Meyer, B.J.1
-
51
-
-
78751535249
-
Identification of transcription start sites of trans-spliced genes: Uncovering unusual operon arrangements
-
doi: 10.1261/rna.2447111
-
Morton JJ, Blumenthal T. 2011. Identification of transcription start sites of trans-spliced genes: uncovering unusual operon arrangements. RNA 17:327-37. doi: 10.1261/rna.2447111.
-
(2011)
RNA
, vol.17
, pp. 327-337
-
-
Morton, J.J.1
Blumenthal, T.2
-
52
-
-
74549132843
-
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
-
doi: 10.1126/science.1181421
-
Nechaev S, Fargo DC, Dos Santos G, Liu L, Gao Y, Adelman K. 2010. Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327:335-8. doi: 10.1126/science.1181421.
-
(2010)
Science
, vol.327
, pp. 335-338
-
-
Nechaev, S.1
Fargo, D.C.2
dos Santos, G.3
Liu, L.4
Gao, Y.5
Adelman, K.6
-
53
-
-
79952225478
-
An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression
-
doi: 10.1101/gad.2016011
-
Pferdehirt RR, Kruesi WS, Meyer BJ. 2011. An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression. Genes Dev 25:499-515. doi: 10.1101/gad.2016011.
-
(2011)
Genes Dev
, vol.25
, pp. 499-515
-
-
Pferdehirt, R.R.1
Kruesi, W.S.2
Meyer, B.J.3
-
54
-
-
84878533141
-
Condensin: Crafting the chromosome landscape
-
doi: 10.1007/s00412-013-0405-1
-
Piazza I, Haering CH, Rutkowska A. 2013. Condensin: crafting the chromosome landscape. Chromosoma 122:175-90. doi: 10.1007/s00412-013-0405-1.
-
(2013)
Chromosoma
, vol.122
, pp. 175-190
-
-
Piazza, I.1
Haering, C.H.2
Rutkowska, A.3
-
55
-
-
84870703302
-
Mutations in the transcription elongation factor SPT5 disrupt a reporter for dosage compensation in Drosophila
-
doi: 10.1371/journal.pgen.1003073
-
Prabhakaran M, Kelley RL. 2012. Mutations in the transcription elongation factor SPT5 disrupt a reporter for dosage compensation in Drosophila. PLOS GENET 8:e1003073. doi: 10.1371/journal.pgen.1003073.
-
(2012)
PLOS GENET
, vol.8
-
-
Prabhakaran, M.1
Kelley, R.L.2
-
56
-
-
0027166316
-
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes
-
doi: 10.1073/pnas.90.17.7923
-
Rasmussen EB, Lis JT. 1993. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. Proc Natl Acad Sci USA 90:7923-7. doi: 10.1073/pnas.90.17.7923.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 7923-7927
-
-
Rasmussen, E.B.1
Lis, J.T.2
-
57
-
-
84858165145
-
Genome-wide structure and organization of eukaryotic pre-initiation complexes
-
doi: 10.1038/nature10799
-
Rhee HS, Pugh BF. 2012. Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483:295-301. doi: 10.1038/nature10799.
-
(2012)
Nature
, vol.483
, pp. 295-301
-
-
Rhee, H.S.1
Pugh, B.F.2
-
58
-
-
57849140661
-
Divergent transcription from active promoters
-
doi: 10.1126/science.1162253
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, et al. 2008. Divergent transcription from active promoters. Science 322:1849-51. doi: 10.1126/science.1162253.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
-
59
-
-
0035943734
-
Linking global histone acetylation to the transcription enhancement of X-chromosomal genes in Drosophila males
-
doi: 10.1074/jbc.C100351200
-
Smith ER, Allis CD, Lucchesi JC. 2001. Linking global histone acetylation to the transcription enhancement of X-chromosomal genes in Drosophila males. J Biol Chem 276:31483-6. doi: 10.1074/jbc.C100351200.
-
(2001)
J Biol Chem
, vol.276
, pp. 31483-31486
-
-
Smith, E.R.1
Allis, C.D.2
Lucchesi, J.C.3
-
60
-
-
35748962754
-
Model-based analysis of two-color arrays (MA2C)
-
doi: 10.1186/gb-2007-8-8-r178
-
Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, et al. 2007. Model-based analysis of two-color arrays (MA2C). Genome Biology 8:R178. doi: 10.1186/gb-2007-8-8-r178.
-
(2007)
Genome Biology
, vol.8
-
-
Song, J.S.1
Johnson, W.E.2
Zhu, X.3
Zhang, X.4
Li, W.5
Manrai, A.K.6
-
61
-
-
84876343896
-
Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters
-
doi: 10.1126/science.1231895
-
Straub T, Becker PB. 2013. Comment on "Drosophila dosage compensation involves enhanced Pol II recruitment to male X-linked promoters". Science 340:273. doi: 10.1126/science.1231895.
-
(2013)
Science
, vol.340
, pp. 273
-
-
Straub, T.1
Becker, P.B.2
-
62
-
-
77952563068
-
Condensin and cohesin complexity: The expanding repertoire of functions
-
doi: 10.1038/nrg2794
-
Wood AJ, Severson AF, Meyer BJ. 2010. Condensin and cohesin complexity: the expanding repertoire of functions. Nat Rev Genet 11:391-404. doi: 10.1038/nrg2794.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 391-404
-
-
Wood, A.J.1
Severson, A.F.2
Meyer, B.J.3
-
63
-
-
79959864524
-
The RING finger protein MSL2 in the MOF complex is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation
-
doi: 10.1016/j.molcel.2011.05.015
-
Wu L, Zee BM, Wang Y, Garcia BA, Dou Y. 2011. The RING finger protein MSL2 in the MOF complex is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation. Mol Cell 43:132-44. doi: 10.1016/j.molcel.2011.05.015.
-
(2011)
Mol Cell
, vol.43
, pp. 132-144
-
-
Wu, L.1
Zee, B.M.2
Wang, Y.3
Garcia, B.A.4
Dou, Y.5
-
64
-
-
78649458548
-
RNA sequencing shows no dosage compensation of the active X-chromosome
-
doi: 10.1038/ng.711
-
Xiong Y, Chen X, Chen Z, Wang X, Shi S, Zhang J, et al. 2010. RNA sequencing shows no dosage compensation of the active X-chromosome. Nat Genet 42:1043-7. doi: 10.1038/ng.711.
-
(2010)
Nat Genet
, vol.42
, pp. 1043-1047
-
-
Xiong, Y.1
Chen, X.2
Chen, Z.3
Wang, X.4
Shi, S.5
Zhang, J.6
-
65
-
-
84872393129
-
Transcription elongation factors DSIF and NELF: Promoter-proximal pausing and beyond
-
doi: 10.1016/j.bbagrm.2012.11.007
-
Yamaguchi Y, Shibata H, Handa H. 2013. Transcription elongation factors DSIF and NELF: promoter-proximal pausing and beyond. Biochim Biophys Acta 1829:98-104. doi: 10.1016/j.bbagrm.2012.11.007.
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 98-104
-
-
Yamaguchi, Y.1
Shibata, H.2
Handa, H.3
-
66
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
doi: 10.1016/S0092-8674(00)80713-8
-
Yamaguchi Y, Takagi T, Wada T, Yano K, Furuya A, Sugimoto S, et al. 1999. NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97:41-51. doi: 10.1016/S0092-8674(00)80713-8.
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
-
67
-
-
77649225979
-
Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response
-
doi: 10.1371/journal.pgen.1000848
-
Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, et al. 2010. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. PLOS GENET 6:e1000848. doi: 10.1371/journal.pgen.1000848.
-
(2010)
PLOS GENET
, vol.6
-
-
Zhong, M.1
Niu, W.2
Lu, Z.J.3
Sarov, M.4
Murray, J.I.5
Janette, J.6
|