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Volumn 18, Issue 9, 2011, Pages 977-983

Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3; LYSINE; METHYLTRANSFERASE; PROTEIN HYPB; RNA POLYMERASE II; UNCLASSIFIED DRUG;

EID: 80052445151     PISSN: 15459993     EISSN: 15459985     Source Type: Journal    
DOI: 10.1038/nsmb.2123     Document Type: Article
Times cited : (198)

References (59)
  • 2
    • 33846025127 scopus 로고    scopus 로고
    • Dynamic Regulation of Histone Lysine Methylation by Demethylases
    • DOI 10.1016/j.molcel.2006.12.010, PII S1097276506008689
    • Shi, Y. & Whetstine, J.R. Dynamic regulation of histone lysine methylation by demethylases. Mol. Cell 25, 1-14 (2007). (Pubitemid 46049067)
    • (2007) Molecular Cell , vol.25 , Issue.1 , pp. 1-14
    • Shi, Y.1    Whetstine, J.R.2
  • 3
    • 0037147121 scopus 로고    scopus 로고
    • Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
    • DOI 10.1074/jbc.M209294200
    • Li, J., Moazed, D. & Gygi, S.P. Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation. J. Biol. Chem. 277, 49383-49388 (2002). (Pubitemid 36014370)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.51 , pp. 49383-49388
    • Li, J.1    Moazed, D.2    Gygi, S.P.3
  • 4
    • 0037512273 scopus 로고    scopus 로고
    • The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II
    • DOI 10.1074/jbc.M212134200
    • Li, B., Howe, L., Anderson, S., Yates, J.R. III & Workman, J.L. The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J. Biol. Chem. 278, 8897-8903 (2003). (Pubitemid 36800365)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.11 , pp. 8897-8903
    • Li, B.1    Howe, L.2    Anderson, S.3    Yates III, J.R.4    Workman, J.L.5
  • 7
    • 29144468972 scopus 로고    scopus 로고
    • Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to pol II elongation
    • DOI 10.1016/j.molcel.2005.11.021, PII S1097276505018083
    • Joshi, A.A. & Struhl, K. Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol. Cell 20, 971-978 (2005). (Pubitemid 41814885)
    • (2005) Molecular Cell , vol.20 , Issue.6 , pp. 971-978
    • Joshi, A.A.1    Struhl, K.2
  • 8
    • 27744587302 scopus 로고    scopus 로고
    • Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
    • Keogh, M.C. et al. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123, 593-605 (2005).
    • (2005) Cell , vol.123 , pp. 593-605
    • Keogh, M.C.1
  • 9
    • 34249099730 scopus 로고    scopus 로고
    • Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
    • DOI 10.1126/science.1139004
    • Li, B. et al. Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316, 1050-1054 (2007). (Pubitemid 46799495)
    • (2007) Science , vol.316 , Issue.5827 , pp. 1050-1054
    • Li, B.1    Gogol, M.2    Carey, M.3    Lee, D.4    Seidel, C.5    Workman, J.L.6
  • 10
    • 34249874030 scopus 로고    scopus 로고
    • Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
    • DOI 10.1101/gad.1539307
    • Li, B. et al. Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes Dev. 21, 1422-1430 (2007). (Pubitemid 46871044)
    • (2007) Genes and Development , vol.21 , Issue.11 , pp. 1422-1430
    • Li, B.1    Gogol, M.2    Carey, M.3    Pattenden, S.G.4    Seidel, C.5    Workman, J.L.6
  • 11
    • 38549139593 scopus 로고    scopus 로고
    • Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation
    • DOI 10.1038/sj.emboj.7601967, PII 7601967
    • Edmunds, J.W., Mahadevan, L.C. & Clayton, A.L. Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation. EMBO J. 27, 406-420 (2008). (Pubitemid 351161656)
    • (2008) EMBO Journal , vol.27 , Issue.2 , pp. 406-420
    • Edmunds, J.W.1    Mahadevan, L.C.2    Clayton, A.L.3
  • 12
    • 61349098460 scopus 로고    scopus 로고
    • Differential chromatin marking of introns and expressed exons by H3K36me3
    • Kolasinska-Zwierz, P. et al. Differential chromatin marking of introns and expressed exons by H3K36me3. Nat. Genet. 41, 376-381 (2009).
    • (2009) Nat. Genet. , vol.41 , pp. 376-381
    • Kolasinska-Zwierz, P.1
  • 13
    • 70350013550 scopus 로고    scopus 로고
    • Biased chromatin signatures around polyadenylation sites and exons
    • Spies, N., Nielsen, C.B., Padgett, R.A. & Burge, C.B. Biased chromatin signatures around polyadenylation sites and exons. Mol. Cell 36, 245-254 (2009).
    • (2009) Mol. Cell , vol.36 , pp. 245-254
    • Spies, N.1    Nielsen, C.B.2    Padgett, R.A.3    Burge, C.B.4
  • 14
    • 69949124307 scopus 로고    scopus 로고
    • Nucleosome positioning as a determinant of exon recognition
    • Tilgner, H. et al. Nucleosome positioning as a determinant of exon recognition. Nat. Struct. Mol. Biol. 16, 996-1001 (2009).
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 996-1001
    • Tilgner, H.1
  • 15
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • Schwartz, S., Meshorer, E. & Ast, G. Chromatin organization marks exon-intron structure. Nat. Struct. Mol. Biol. 16, 990-995 (2009).
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 16
    • 70349333201 scopus 로고    scopus 로고
    • Nucleosomes are well positioned in exons and carry characteristic histone modifications
    • Andersson, R., Enroth, S., Rada-Iglesias, A., Wadelius, C. & Komorowski, J. Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res. 19, 1732-1741 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1732-1741
    • Andersson, R.1    Enroth, S.2    Rada-Iglesias, A.3    Wadelius, C.4    Komorowski, J.5
  • 17
    • 78649836342 scopus 로고    scopus 로고
    • Reciprocal intronic and exonic histone modification regions in humans
    • Huff, J.T., Plocik, A.M., Guthrie, C. & Yamamoto, K.R. Reciprocal intronic and exonic histone modification regions in humans. Nat. Struct. Mol. Biol. 17, 1495-1499 (2010).
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 1495-1499
    • Huff, J.T.1    Plocik, A.M.2    Guthrie, C.3    Yamamoto, K.R.4
  • 19
    • 63149192174 scopus 로고    scopus 로고
    • Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing
    • Schor, I.E., Rascovan, N., Pelisch, F., Allo, M. & Kornblihtt, A.R. Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing. Proc. Natl. Acad. Sci. USA 106, 4325-4330 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 4325-4330
    • Schor, I.E.1    Rascovan, N.2    Pelisch, F.3    Allo, M.4    Kornblihtt, A.R.5
  • 20
    • 67650299463 scopus 로고    scopus 로고
    • Control of alternative splicing through siRNA-mediated transcriptional gene silencing
    • Alló, M. et al. Control of alternative splicing through siRNA-mediated transcriptional gene silencing. Nat. Struct. Mol. Biol. 16, 717-724 (2009).
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 717-724
    • Alló, M.1
  • 21
    • 79952364016 scopus 로고    scopus 로고
    • Histone H3 lysine 9 trimethylation and HP1gamma favor inclusion of alternative exons
    • Saint-André, V., Batsche, E., Rachez, C. & Muchardt, C. Histone H3 lysine 9 trimethylation and HP1gamma favor inclusion of alternative exons. Nat. Struct. Mol. Biol. 18, 337-344 (2011).
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 337-344
    • Saint-André, V.1    Batsche, E.2    Rachez, C.3    Muchardt, C.4
  • 22
    • 36249027156 scopus 로고    scopus 로고
    • Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
    • Sims, R.J. III et al. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell 28, 665-676 (2007).
    • (2007) Mol. Cell , vol.28 , pp. 665-676
    • Sims Iii, R.J.1
  • 23
    • 77149175671 scopus 로고    scopus 로고
    • Regulation of alternative splicing by histone modifications
    • Luco, R.F. et al. Regulation of alternative splicing by histone modifications. Science 327, 996-1000 (2010).
    • (2010) Science , vol.327 , pp. 996-1000
    • Luco, R.F.1
  • 24
    • 79961022267 scopus 로고    scopus 로고
    • Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
    • published online doi:10.1038/nsmb.2085 17 July
    • Koch, F. et al. Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat. Struct. Mol. Biol. published online, doi:10.1038/nsmb.2085 (17 July 2011).
    • (2011) Nat. Struct. Mol. Biol.
    • Koch, F.1
  • 25
    • 33847070442 scopus 로고    scopus 로고
    • The Role of Chromatin during Transcription
    • DOI 10.1016/j.cell.2007.01.015, PII S0092867407001092
    • Li, B., Carey, M. & Workman, J.L. The role of chromatin during transcription. Cell 128, 707-719 (2007). (Pubitemid 46273570)
    • (2007) Cell , vol.128 , Issue.4 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 29
    • 34447098370 scopus 로고    scopus 로고
    • A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
    • DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
    • Guenther, M.G., Levine, S.S., Boyer, L.A., Jaenisch, R. & Young, R.A. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130, 77-88 (2007). (Pubitemid 47031323)
    • (2007) Cell , vol.130 , Issue.1 , pp. 77-88
    • Guenther, M.G.1    Levine, S.S.2    Boyer, L.A.3    Jaenisch, R.4    Young, R.A.5
  • 30
    • 70349813779 scopus 로고    scopus 로고
    • Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome
    • van Werven, F.J., van Teeffelen, H.A., Holstege, F.C. & Timmers, H.T. Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat. Struct. Mol. Biol. 16, 1043-1048 (2009).
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 1043-1048
    • Van Werven, F.J.1    Van Teeffelen, H.A.2    Holstege, F.C.3    Timmers, H.T.4
  • 31
    • 77951920690 scopus 로고    scopus 로고
    • C-Myc regulates transcriptional pause release
    • Rahl, P.B. et al. c-Myc regulates transcriptional pause release. Cell 141, 432-445 (2010).
    • (2010) Cell , vol.141 , pp. 432-445
    • Rahl, P.B.1
  • 34
    • 50849145126 scopus 로고    scopus 로고
    • Tissue-specific splicing factor gene expression signatures
    • Grosso, A.R. et al. Tissue-specific splicing factor gene expression signatures. Nucleic Acids Res. 36, 4823-4832 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 4823-4832
    • Grosso, A.R.1
  • 38
    • 33748351186 scopus 로고    scopus 로고
    • Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells
    • DOI 10.1038/nsmb1135, PII NSMB1135
    • Listerman, I., Sapra, A.K. & Neugebauer, K.M. Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat. Struct. Mol. Biol. 13, 815-822 (2006). (Pubitemid 44338776)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.9 , pp. 815-822
    • Listerman, I.1    Sapra, A.K.2    Neugebauer, K.M.3
  • 39
    • 68849084041 scopus 로고    scopus 로고
    • Meayamycin inhibits pre-messenger RNA splicing and exhibits picomolar activity against multidrug-resistant cells
    • Albert, B.J. et al. Meayamycin inhibits pre-messenger RNA splicing and exhibits picomolar activity against multidrug-resistant cells. Mol. Cancer Ther. 8, 2308-2318 (2009).
    • (2009) Mol. Cancer Ther. , vol.8 , pp. 2308-2318
    • Albert, B.J.1
  • 40
    • 0028090567 scopus 로고
    • Physical isolation of nascent RNA chains transcribed by RNA polymerase II: Evidence for cotranscriptional splicing
    • Wuarin, J. & Schibler, U. Physical isolation of nascent RNA chains transcribed by RNA polymerase II: evidence for cotranscriptional splicing. Mol. Cell. Biol. 14, 7219-7225 (1994). (Pubitemid 24326386)
    • (1994) Molecular and Cellular Biology , vol.14 , Issue.11 , pp. 7219-7225
    • Wuarin, J.1    Schibler, U.2
  • 41
    • 40649095272 scopus 로고    scopus 로고
    • Molecular Dissection of Mammalian RNA Polymerase II Transcriptional Termination
    • DOI 10.1016/j.molcel.2007.12.019, PII S1097276508000373
    • West, S., Proudfoot, N.J. & Dye, M.J. Molecular dissection of mammalian RNA polymerase II transcriptional termination. Mol. Cell 29, 600-610 (2008). (Pubitemid 351374683)
    • (2008) Molecular Cell , vol.29 , Issue.5 , pp. 600-610
    • West, S.1    Proudfoot, N.J.2    Dye, M.J.3
  • 42
    • 33644856084 scopus 로고    scopus 로고
    • Exon tethering in transcription by RNA polymerase II
    • DOI 10.1016/j.molcel.2006.01.032, PII S1097276506000803
    • Dye, M.J., Gromak, N. & Proudfoot, N.J. Exon tethering in transcription by RNA polymerase II. Mol. Cell 21, 849-859 (2006). (Pubitemid 43376134)
    • (2006) Molecular Cell , vol.21 , Issue.6 , pp. 849-859
    • Dye, M.J.1    Gromak, N.2    Proudfoot, N.J.3
  • 43
    • 70349125488 scopus 로고    scopus 로고
    • Co-transcriptional splicing of constitutive and alternative exons
    • Pandya-Jones, A. & Black, D.L. Co-transcriptional splicing of constitutive and alternative exons. RNA 15, 1896-1908 (2009).
    • (2009) RNA , vol.15 , pp. 1896-1908
    • Pandya-Jones, A.1    Black, D.L.2
  • 44
    • 79851472312 scopus 로고    scopus 로고
    • The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing
    • Brody, Y. et al. The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing. PLoS Biol. 9, e1000573 (2011).
    • (2011) PLoS Biol. , vol.9
    • Brody, Y.1
  • 45
    • 27444436367 scopus 로고    scopus 로고
    • Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase
    • Sun, X.J. et al. Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase. J. Biol. Chem. 280, 35261-35271 (2005).
    • (2005) J. Biol. Chem. , vol.280 , pp. 35261-35271
    • Sun, X.J.1
  • 46
    • 0038931747 scopus 로고    scopus 로고
    • Coupling of signal transduction to alternative premRNA splicing by a composite splice regulator
    • Konig, H., Ponta, H. & Herrlich, P. Coupling of signal transduction to alternative premRNA splicing by a composite splice regulator. EMBO J. 17, 2904-2913 (1998).
    • (1998) EMBO J. , vol.17 , pp. 2904-2913
    • Konig, H.1    Ponta, H.2    Herrlich, P.3
  • 47
    • 30044441988 scopus 로고    scopus 로고
    • The human SWI/SNF subunit Brm is a regulator of alternative splicing
    • DOI 10.1038/nsmb1030
    • Batsche, E., Yaniv, M. & Muchardt, C. The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat. Struct. Mol. Biol. 13, 22-29 (2006). (Pubitemid 43049398)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.1 , pp. 22-29
    • Batsche, E.1    Yaniv, M.2    Muchardt, C.3
  • 48
    • 16244384503 scopus 로고    scopus 로고
    • A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation
    • DOI 10.1128/MCB.25.8.3305-3316.2005
    • Kizer, K.O. et al. A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol. Cell. Biol. 25, 3305-3316 (2005). (Pubitemid 40464330)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.8 , pp. 3305-3316
    • Kizer, K.O.1    Phatnani, H.P.2    Shibata, Y.3    Hall, H.4    Greenleaf, A.L.5    Strahl, B.D.6
  • 50
    • 33644869317 scopus 로고    scopus 로고
    • 36 methylation to transcription
    • DOI 10.1074/jbc.C500423200
    • Vojnic, E., Simon, B., Strahl, B.D., Sattler, M. & Cramer, P. Structure and carboxylterminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription. J. Biol. Chem. 281, 13-15 (2006). (Pubitemid 43671156)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.1 , pp. 13-15
    • Vojnic, E.1    Simon, B.2    Strahl, B.D.3    Sattler, M.4    Cramer, P.5
  • 51
    • 70249104647 scopus 로고    scopus 로고
    • Defining mechanisms that regulate RNA polymerase II transcription in vivo
    • Fuda, N.J., Ardehali, M.B. & Lis, J.T. Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature 461, 186-192 (2009).
    • (2009) Nature , vol.461 , pp. 186-192
    • Fuda, N.J.1    Ardehali, M.B.2    Lis, J.T.3
  • 52
    • 44449158814 scopus 로고    scopus 로고
    • Splicing, transcription, and chromatin: A ménage a trois
    • DOI 10.1016/j.gde.2008.01.006, PII S0959437X08000105
    • Allemand, E., Batsche, E. & Muchardt, C. Splicing, transcription, and chromatin: a menage a trois. Curr. Opin. Genet. Dev. 18, 145-151 (2008). (Pubitemid 351756536)
    • (2008) Current Opinion in Genetics and Development , vol.18 , Issue.2 , pp. 145-151
    • Allemand, E.1    Batsche, E.2    Muchardt, C.3
  • 53
    • 0019937022 scopus 로고
    • Terminal differentiation of murine erythroleukemia cells: Physical stabilization of end-stage cells
    • DOI 10.1083/jcb.93.2.390
    • Volloch, V. & Housman, D. Terminal differentiation of murine erythroleukemia cells: physical stabilization of end-stage cells. J. Cell Biol. 93, 390-394 (1982). (Pubitemid 12014129)
    • (1982) Journal of Cell Biology , vol.93 , Issue.2 , pp. 390-394
    • Volloch, V.1    Housman, D.2
  • 55
    • 75549089967 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: Update 2010
    • Rhead, B. et al. The UCSC Genome Browser database: update 2010. Nucleic Acids Res. 38, D613-D619 (2010).
    • (2010) Nucleic Acids Res. , vol.38
    • Rhead, B.1
  • 56
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix GeneChip data at the probe level
    • DOI 10.1093/bioinformatics/btg405
    • Gautier, L., Cope, L., Bolstad, B.M. & Irizarry, R.A. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20, 307-315 (2004). (Pubitemid 38262761)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 57
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • DOI 10.1038/35078107
    • Elbashir, S.M. et al. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411, 494-498 (2001). (Pubitemid 32494397)
    • (2001) Nature , vol.411 , Issue.6836 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 58
    • 78650445002 scopus 로고    scopus 로고
    • A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination
    • de Almeida, S.F., Garcia-Sacristan, A., Custodio, N. & Carmo-Fonseca, M. A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination. Nucleic Acids Res. 38, 8015-8026 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 8015-8026
    • De Almeida, S.F.1    Garcia-Sacristan, A.2    Custodio, N.3    Carmo-Fonseca, M.4


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