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Volumn 201, Issue , 2015, Pages 17-26

A comparative study of digital RT-PCR and RT-qPCR for quantification of Hepatitis A virus and Norovirus in lettuce and water samples

Author keywords

HAV; Lettuce; NoV; RT dPCR; RT qPCR; Water

Indexed keywords

COMPLEMENTARY DNA; DRINKING WATER; VIRUS RNA;

EID: 84923330734     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2015.02.006     Document Type: Article
Times cited : (94)

References (40)
  • 1
    • 0035133921 scopus 로고    scopus 로고
    • Diagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses
    • Atmar R.L., Estes M.K. Diagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses. Clin. Microbiol. Rev. 2001, 14:15-37.
    • (2001) Clin. Microbiol. Rev. , vol.14 , pp. 15-37
    • Atmar, R.L.1    Estes, M.K.2
  • 3
    • 67349135284 scopus 로고    scopus 로고
    • Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number
    • Bhat S., Herrmann J., Armishaw P., Corbisier P., Emslie K.R. Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number. Anal. Bioanal. Chem. 2009, 394:457-467.
    • (2009) Anal. Bioanal. Chem. , vol.394 , pp. 457-467
    • Bhat, S.1    Herrmann, J.2    Armishaw, P.3    Corbisier, P.4    Emslie, K.R.5
  • 4
    • 78650024192 scopus 로고    scopus 로고
    • Simultaneous recovery of bacteria and viruses from contaminated water and spinach by a filtration method
    • Brassard J., Guévremont É., Gagné M.J., Lamoureux L. Simultaneous recovery of bacteria and viruses from contaminated water and spinach by a filtration method. Int. J. Food Microbiol. 2011, 144:565-568.
    • (2011) Int. J. Food Microbiol. , vol.144 , pp. 565-568
    • Brassard, J.1    Guévremont, É.2    Gagné, M.J.3    Lamoureux, L.4
  • 5
    • 14044265394 scopus 로고    scopus 로고
    • Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction
    • Bustin S.A., Nolan T. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J. Biomol. Tech. 2004, 15:155-166.
    • (2004) J. Biomol. Tech. , vol.15 , pp. 155-166
    • Bustin, S.A.1    Nolan, T.2
  • 6
    • 33751243056 scopus 로고    scopus 로고
    • Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus
    • Cannon J.L., Papafragkou E., Park G.W., Osborne J., Jaykus L.A., Vinjé J. Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus. J. Food Prot. 2006, 69:2761-2765.
    • (2006) J. Food Prot. , vol.69 , pp. 2761-2765
    • Cannon, J.L.1    Papafragkou, E.2    Park, G.W.3    Osborne, J.4    Jaykus, L.A.5    Vinjé, J.6
  • 7
    • 33745152691 scopus 로고    scopus 로고
    • Development, evaluation and standardization of a real time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples
    • Costafreda M.I., Bosch A., Pinto R.M. Development, evaluation and standardization of a real time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples. Appl. Environ. Microbiol. 2006, 72:3846-3855.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3846-3855
    • Costafreda, M.I.1    Bosch, A.2    Pinto, R.M.3
  • 8
    • 84879165866 scopus 로고    scopus 로고
    • Comparison of two extraction methods for the detection of hepatitis A virus in lettuces using the murine norovirus as a process control
    • Coudray C., Merle G., Martin-Latil S., Guillier L., Perelle S. Comparison of two extraction methods for the detection of hepatitis A virus in lettuces using the murine norovirus as a process control. J. Virol. Methods 2013, 193:96-102.
    • (2013) J. Virol. Methods , vol.193 , pp. 96-102
    • Coudray, C.1    Merle, G.2    Martin-Latil, S.3    Guillier, L.4    Perelle, S.5
  • 9
    • 0023263622 scopus 로고
    • Development of a plaque assay for a cytopathic, rapidly replicating isolate of hepatitis A virus
    • Cromeans T., Sobsey M.D., Fields H.A. Development of a plaque assay for a cytopathic, rapidly replicating isolate of hepatitis A virus. J. Med. Virol. 1987, 22:45-56.
    • (1987) J. Med. Virol. , vol.22 , pp. 45-56
    • Cromeans, T.1    Sobsey, M.D.2    Fields, H.A.3
  • 10
    • 84887039225 scopus 로고    scopus 로고
    • Tolerance of droplet-digital PCR vs real-time quantitative PCR to inhibitory substances
    • Dingle T.C., Sedlak R.H., Cook L., Jerome K.R. Tolerance of droplet-digital PCR vs real-time quantitative PCR to inhibitory substances. Clin. Chem. 2013, 59:1670-1672.
    • (2013) Clin. Chem. , vol.59 , pp. 1670-1672
    • Dingle, T.C.1    Sedlak, R.H.2    Cook, L.3    Jerome, K.R.4
  • 11
    • 51449098381 scopus 로고    scopus 로고
    • Mathematical analysis of copy number variation in a DNA sample using digital PCR on a nanofluidic device
    • Dube S., Qin J., Ramakrishnan R. Mathematical analysis of copy number variation in a DNA sample using digital PCR on a nanofluidic device. PLoS One 2008, 3(8):e2876.
    • (2008) PLoS One , vol.3 , Issue.8 , pp. e2876
    • Dube, S.1    Qin, J.2    Ramakrishnan, R.3
  • 12
    • 84890431032 scopus 로고    scopus 로고
    • Multiplex real-time RT-qPCR for the detection of Norovirus in bottled and tap water using murine norovirus as a process control
    • Hennechart-Collette C., Martin-Latil S., Guillier L., Perelle S. Multiplex real-time RT-qPCR for the detection of Norovirus in bottled and tap water using murine norovirus as a process control. J. Appl. Microbiol. 2014, 116:179-190.
    • (2014) J. Appl. Microbiol. , vol.116 , pp. 179-190
    • Hennechart-Collette, C.1    Martin-Latil, S.2    Guillier, L.3    Perelle, S.4
  • 13
    • 84869020196 scopus 로고    scopus 로고
    • Low-level detection and quantitation of cellular HIV-1 DNA and 2-LTR circles using droplet digital PCR
    • Henrich T.J., Gallien S., Li J.Z., Pereyra F., Kuritzkes D.R. Low-level detection and quantitation of cellular HIV-1 DNA and 2-LTR circles using droplet digital PCR. J. Virol. Methods 2012, 186:68-72.
    • (2012) J. Virol. Methods , vol.186 , pp. 68-72
    • Henrich, T.J.1    Gallien, S.2    Li, J.Z.3    Pereyra, F.4    Kuritzkes, D.R.5
  • 16
    • 73349109125 scopus 로고    scopus 로고
    • Hollow-fiber ultrafiltration for the concentration and simultaneous recovery of multiple pathogens in contaminated foods
    • Kim H.Y., Park H.J., Ko G. Hollow-fiber ultrafiltration for the concentration and simultaneous recovery of multiple pathogens in contaminated foods. J. Food Prot. 2009, 72:2547-2552.
    • (2009) J. Food Prot. , vol.72 , pp. 2547-2552
    • Kim, H.Y.1    Park, H.J.2    Ko, G.3
  • 17
    • 79551544664 scopus 로고    scopus 로고
    • Noroviruses: the leading cause of gastroenteritis worldwide
    • Koo H.L., Ajami N., Atmar R.L., DuPont H.L. Noroviruses: the leading cause of gastroenteritis worldwide. Discov. Med. 2010, 10:61-70.
    • (2010) Discov. Med. , vol.10 , pp. 61-70
    • Koo, H.L.1    Ajami, N.2    Atmar, R.L.3    DuPont, H.L.4
  • 18
    • 84892564532 scopus 로고    scopus 로고
    • Environmental persistence and transfer of enteric viruses
    • Kotwal G., Cannon J.L. Environmental persistence and transfer of enteric viruses. Curr. Opin. Virol. 2014, 4C:37-43.
    • (2014) Curr. Opin. Virol. , vol.4 C , pp. 37-43
    • Kotwal, G.1    Cannon, J.L.2
  • 20
    • 77954758685 scopus 로고    scopus 로고
    • International standardization of a method for detection of human pathogenic viruses in molluscan shellfish
    • Lees D., CEN WG6 TAG4 International standardization of a method for detection of human pathogenic viruses in molluscan shellfish. Food Environ. Virol. 2010, 2:146-155.
    • (2010) Food Environ. Virol. , vol.2 , pp. 146-155
    • Lees, D.1    CEN WG6, TAG42
  • 21
    • 0026069630 scopus 로고
    • Antigenic and genetic variation in cytopathic hepatitis A virus variants arising during persistent infection: evidence for genetic recombination
    • Lemon S.M., Murphy P.C., Shields P.A., Ping L.H., Feinstone S.M., Cromeans T., Jansen R.W. Antigenic and genetic variation in cytopathic hepatitis A virus variants arising during persistent infection: evidence for genetic recombination. J. Virol. 1991, 65:2056-2065.
    • (1991) J. Virol. , vol.65 , pp. 2056-2065
    • Lemon, S.M.1    Murphy, P.C.2    Shields, P.A.3    Ping, L.H.4    Feinstone, S.M.5    Cromeans, T.6    Jansen, R.W.7
  • 22
    • 84861004071 scopus 로고    scopus 로고
    • Comparison of two extraction methods for the detection of hepatitis A virus in semi-dried tomatoes and murine norovirus as a process control by duplex RT-qPCR
    • Martin-Latil S., Hennechart Collette C., Guillier L., Perelle S. Comparison of two extraction methods for the detection of hepatitis A virus in semi-dried tomatoes and murine norovirus as a process control by duplex RT-qPCR. Food Microbiol. 2012, 31:246-253.
    • (2012) Food Microbiol. , vol.31 , pp. 246-253
    • Martin-Latil, S.1    Hennechart Collette, C.2    Guillier, L.3    Perelle, S.4
  • 24
    • 84893906065 scopus 로고    scopus 로고
    • Method for HEV detection in raw pig liver products and its implementation for naturally contaminated food
    • Martin-Latil S., Hennechart-Collette C., Guillier L., Perelle S. Method for HEV detection in raw pig liver products and its implementation for naturally contaminated food. Int. J. Food Microbiol. 2014, 176:1-8.
    • (2014) Int. J. Food Microbiol. , vol.176 , pp. 1-8
    • Martin-Latil, S.1    Hennechart-Collette, C.2    Guillier, L.3    Perelle, S.4
  • 26
    • 84877062339 scopus 로고    scopus 로고
    • Quantitative analysis of food and feed samples with droplet digital PCR
    • Morisset D., Štebih D., Milavec M., Gruden K., Žel J. Quantitative analysis of food and feed samples with droplet digital PCR. PLoS One 2013, 8:e62583.
    • (2013) PLoS One , vol.8 , pp. e62583
    • Morisset, D.1    Štebih, D.2    Milavec, M.3    Gruden, K.4    Žel, J.5
  • 28
    • 60849117521 scopus 로고    scopus 로고
    • Use of a robotic RNA purification protocol based on the NucliSens® easyMAG™ for real-time RT-PCR detection of hepatitis A virus in bottled water
    • Perelle S., Cavellini L., Burger C., Blaise-Boisseau S., Hennechart-Collette C., Merle G., Fach P. Use of a robotic RNA purification protocol based on the NucliSens® easyMAG™ for real-time RT-PCR detection of hepatitis A virus in bottled water. J. Virol. Methods 2009, 157:80-83.
    • (2009) J. Virol. Methods , vol.157 , pp. 80-83
    • Perelle, S.1    Cavellini, L.2    Burger, C.3    Blaise-Boisseau, S.4    Hennechart-Collette, C.5    Merle, G.6    Fach, P.7
  • 30
    • 84894901261 scopus 로고    scopus 로고
    • One-step RT-droplet digital PCR: a breakthrough in the quantification of waterborne RNA viruses
    • Rački N., Morisset D., Gutierrez-Aguirre I., Ravnikar M. One-step RT-droplet digital PCR: a breakthrough in the quantification of waterborne RNA viruses. Anal. Bioanal. Chem. 2014, 406:661-667.
    • (2014) Anal. Bioanal. Chem. , vol.406 , pp. 661-667
    • Rački, N.1    Morisset, D.2    Gutierrez-Aguirre, I.3    Ravnikar, M.4
  • 31
    • 34347360835 scopus 로고    scopus 로고
    • Hepatitis A virus detection in food: current and future prospects
    • Sánchez G., Bosch A., Pintó R.M. Hepatitis A virus detection in food: current and future prospects. Lett. Appl. Microbiol. 2007, 45:1-5.
    • (2007) Lett. Appl. Microbiol. , vol.45 , pp. 1-5
    • Sánchez, G.1    Bosch, A.2    Pintó, R.M.3
  • 32
    • 84884478678 scopus 로고    scopus 로고
    • Evaluation of digital PCR for absolute RNA quantification
    • Sanders R., Mason D.J., Foy C.A., Huggett J.F. Evaluation of digital PCR for absolute RNA quantification. PLoS One 2013, 8:e75296.
    • (2013) PLoS One , vol.8 , pp. e75296
    • Sanders, R.1    Mason, D.J.2    Foy, C.A.3    Huggett, J.F.4
  • 35
    • 78149408527 scopus 로고    scopus 로고
    • Evaluation of a norovirus detection methodology for soft red fruits
    • Stals A., Baert L., Van Coillie E., Uyttendaele M. Evaluation of a norovirus detection methodology for soft red fruits. Food Microbiol. 2011, 28:52-58.
    • (2011) Food Microbiol. , vol.28 , pp. 52-58
    • Stals, A.1    Baert, L.2    Van Coillie, E.3    Uyttendaele, M.4
  • 36
    • 84862151028 scopus 로고    scopus 로고
    • Evaluation of four virus recovery methods for detecting noroviruses on fresh lettuce, sliced ham, and frozen raspberries
    • Summa M., von Bonsdorff C.H., Maunula L. Evaluation of four virus recovery methods for detecting noroviruses on fresh lettuce, sliced ham, and frozen raspberries. J. Virol. Methods 2012, 183:154-160.
    • (2012) J. Virol. Methods , vol.183 , pp. 154-160
    • Summa, M.1    von Bonsdorff, C.H.2    Maunula, L.3
  • 40
    • 33646718792 scopus 로고    scopus 로고
    • Murine norovirus: a model system to study norovirus biology and pathogenesis
    • Wobus C.E., Thackray L.B., Virgin H.W. Murine norovirus: a model system to study norovirus biology and pathogenesis. J. Virol. 2006, 80:5104-5112.
    • (2006) J. Virol. , vol.80 , pp. 5104-5112
    • Wobus, C.E.1    Thackray, L.B.2    Virgin, H.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.