Comparison of two extraction methods for the detection of hepatitis A virus in semi-dried tomatoes and murine norovirus as a process control by duplex RT-qPCR

Food Microbiology

Volumn 31, Issue 2, 2012, Pages 246-253

  Martin Latil, Sandra ^a   Hennechart Collette, Catherine ^a   Guillier, Laurent ^a   Perelle, Sylvie ^a  

^a French Agency for Food   (France)

Author keywords

Hepatitis A virus; Murine norovirus; Process control; RT qPCR; Semi dried tomatoes

Indexed keywords

ARTICLE; COMPARATIVE STUDY; FOOD CONTAMINATION; FRUIT; GENETICS; HEPATITIS A; HEPATITIS A VIRUS; HUMAN; ISOLATION AND PURIFICATION; LIQUID LIQUID EXTRACTION; METHODOLOGY; NOROVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STANDARD; TOMATO; ULTRACENTRIFUGATION; VIROLOGY;

FOOD CONTAMINATION; FRUIT; HEPATITIS A; HEPATITIS A VIRUS; HUMANS; LIQUID-LIQUID EXTRACTION; LYCOPERSICON ESCULENTUM; NOROVIRUS; REFERENCE STANDARDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; ULTRACENTRIFUGATION;

HEPATITIS A VIRUS; LYCOPERSICON ESCULENTUM; MURINE NOROVIRUS; NOROVIRUS; RNA VIRUSES;

EID: 84861004071     PISSN: 07400020     EISSN: 10959998     Source Type: Journal    
DOI: 10.1016/j.fm.2012.03.007     Document Type: Article

References (38)

1. Anonymous Hepatitis A Outbreak in Australia 2009 November 13, [Internet], National Travel Health Network and Centre, [cited 2010 March 25]. Available from:. http://www.nathnac.org/pro/clinical_updates/hepatitisaoutbreakaustralia_131109healthprofessionals.htm.
2. Baert L., Mattison K., Loisy-Hamon F., Harlow J., Martyres A., Lebeau B., Stals A., Van Coillie E., Herman L., Uyttendaele M. Review: norovirus prevalence in Belgian, Canadian and French fresh produce: a threat to human health?. International Journal of Food Microbiology 2011, 151:261-269.
3. Beuchat L.R. Vectors and conditions for preharvest contamination of fruits and vegetables capable of causing enteric diseases. British Food Journal 2006, 108:38-53.
4. Blaise-Boisseau S., Hennechart-Collette C., Guillier L., Perelle S. Duplex real-time qRT-PCR for the detection of hepatitis A virus in water and raspberries using the MS2 bacteriophage as a process control. Journal of Virological Methods 2010, 166:48-53.
5. Butot S., Putallaz T., Sánchez G. Procedure for rapid concentration and detection of enteric viruses from berries and vegetables. Applied and Environmental Microbiology 2007, 73:186-192.
6. Cannon J.L., Papafragkou E., Park G.W., Osborne J., Jaykus L.A., Vinjé J. Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus. Journal of Food Protection 2006, 69:2761-2765.
7. Costafreda M.I., Bosch A., Pinto R.M. Development, evaluation and standardization of a real time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples. Applied and Environmental Microbiology 2006, 72:3846-3855.
8. Cromeans T., Sobsey M.D., Fields H.A. Development of a plaque assay for a cytopathic, rapidly replicating isolate of hepatitis A virus. Journal of Medical Virology 1987, 22:45-56.
9. D'Agostino M., Cook N., Rodriguez-Lazaro D., Rutjes S. Nucleic acid amplification-based methods for detection of enteric viruses: definition of controls and interpretation of results. Food and Environmental Virology 2011, 3:55-60.
10. Di Pasquale S., Paniconi M., De Medici D., Suffredini E., Croci L. Duplex real time PCR for the detection of hepatitis A virus in shellfish using feline calicivirus as a process control. Journal of Virological Methods 2010, 163:96-100.
11. Di Pasquale S., Paniconi M., Auricchio B., Orefice L., Schultz A.C., De Medici D. Comparison of different concentration methods for the detection of hepatitis A virus and calicivirus from bottled natural mineral waters. Journal of Virological Methods 2010, 165:57-63.
12. Dubois E., Hennechart C., Deboosère N., Merle G., Legeay O., Burger C., Le Calvé M., Lombard B., Ferré V., Traoré O. Intra-laboratory validation of a concentration method adapted for the enumeration of infectious F-specific RNA coliphage, enterovirus, and hepatitis A virus from inoculated leaves of salad vegetables. International Journal of Food Microbiology 2006, 108:164-171.
13. Dubois E., Hennechart C., Merle G., Burger C., Hmila N., Ruelle S., Perelle S., Ferré V. Detection and quantification by real-time RT-PCR of hepatitis A virus from inoculated tap waters, salad vegetables, and soft fruits: characterization of the method performances. International Journal of Food Microbiology 2007, 117:141-149.
14. Fraisse A., Temmam S., Deboosere N., Guillier L., Delobel A., Maris P., Vialette M., Morin T., Perelle S. Comparison of chlorine and peroxyacetic-based disinfectant to inactivate Feline calicivirus, Murine norovirus and Hepatitis A virus on lettuce. International Journal of Food Microbiology 2011, 151:98-104.
15. Gallot C., Grout L., Roque-Afonso A.-M., Couturier E., Carrillo-Santisteve P., Pouey J., Letort M.-J., Hoppe S., Capdepon P., Saint-Martin S., De Valk H., Vaillant V. Hepatitis A associated with semidried tomatoes, France, 2010. Emerging Infectious Diseases 2011, 17:566-567.
16. Hernández F., Monge R., Jiménez C., Taylor L. Rotavirus and hepatitis A virus in market lettuce (Latuca sativa) in Costa Rica. International Journal of Food Microbiology 1997, 37:221-223.
17. Karst S.M., Wobus C.E., Lay M., Davidson J., Virgin H.W. STAT1-dependent innate immunity to a Norwalk-like virus. Science 2003, 299:1575-1578.
18. Koopmans M., Duizer E. Foodborne viruses: an emerging problem. International Journal of Food Microbiology 2004, 90:23-41.
19. Koopmans M., von Bonsdorff C.H., Vinjé J., de Medici D., Monroe S. Foodborne viruses. FEMS Microbiology Reviews 2002, 26:187-205.
20. Lacey, S., Tracy, L., Hammond, R., Revill, P., Donnan, E., Lalor, K., Bowden, S., 2009. Hepatitis A virus outbreak: molecular epidemiology indicates a common source. The 5th TEPHINET Southeast Asia and Western Pacific Bi-Regional Scientific Conference; November 2-6, Seoul, Korea.
21. Le Guyader F.S., Parnaudeau S., Schaeffer J., Bosch A., Loisy F., Pommepuy M., Atmar R.L. Detection and quantification of norovirus in shellfish. Applied and Environmental Microbiology 2009, 75:618-624.
22. Lees D., CEN WG6 TAG4 International standardization of a method for detection of human pathogenic viruses in molluscan shellfish. Food Environmental Virology 2010, 2:146-155.
23. Lemon S.M., Murphy P.C., Shields P.A., Ping L.H., Feinstone S.M., Cromeans T., Jansen R.W. Antigenic and genetic variation in cytopathic hepatitis A virus variants arising during persistent infection: evidence for genetic recombination. Journal of Virology 1991, 65:2056-2065.
24. Loisy F., Atmar R.L., Guillon P., Le Cann P., Pommepuy M., Le Guyader F.S. Real-time RT-PCR for norovirus screening in shellfish. Journal of Virological Methods 2005, 123:1-7.
25. Mattison K., Brassard J., Gagné M.J., Ward P., Houde A., Lessard L., Simard C., Shukla A., Pagotto F., Jones T.H., Trottier Y.L. The feline calicivirus as a sample process control for the detection of food and waterborne RNA viruses. International Journal of Food Microbiology 2009, 132:73-77.
26. Petrignani M., Verhoef L., van Hunen R., Swaan C., van Steenbergen J., Boxman I., Ober H.J., Vennema H., Koopmans M. A possible foodborne outbreak of hepatitis A in the Netherlands, January-February 2010. Euro Surveill 2010, 15(11). pii: 19512.
27. Petrignani M., Harms M., Verhoef L., van Hunen R., Swaan C., van Steenbergen J., Boxman I., Peran i Sala R., Ober H., Vennema H., Koopmans M., van Pelt W. Update: a food-borne outbreak of hepatitis A in the Netherlands related to semi-dried tomatoes in oil, January-February 2010. Euro Surveill 2010, 15(20). pii: 19572.
28. Rolfe K.J., Parmar S., Mururi D., Wreghitt T.G., Jalal H., Zhang H., Curran M.D. An internally controlled, one-step, real-time RT-PCR assay for norovirus detection and genogrouping. Journal of Clinical Virology 2007, 39:318-321.
29. Rosenblum L.S., Mirkin I.R., Allen D.T., Safford S., Hadler S.C. A multifocal outbreak of hepatitis A traced to commercially distributed lettuce. American Journal of Public Health 1990, 80:1075-1079.
30. Sánchez G., Bosch A., Pintó R.M. Hepatitis A virus detection in food: current and future prospects. Letters in Applied Microbiology 2007, 45:1-5.
31. Stals A., Baert L., De Keuckelaere A., Van Coillie E., Uyttendaele M. Evaluation of a norovirus detection methodology for ready-to-eat foods. International Journal of Food Microbiology 2011, 145:420-425.
32. Stals A., Baert L., Jasson V., Van Coillie E., Uyttendaele M. Screening of fruit products for norovirus and the difficulty of interpreting positive PCR results. Journal of Food Protection 2011, 74:425-431.
33. Stals A., Baert L., Van Coillie E., Uyttendaele M. Evaluation of a norovirus detection methodology for soft red fruits. Food Microbiology 2011, 28:52-58.
34. Tichopad A., Dilger M., Schwarz G., Plaffl M.W. Standardized determination of real-time PCR efficiency from a single reaction set-up. Nucleic Acids Research 2003, 31(20):e122. Erratum in: Nucleic Acids Research 2003. 31(22), 6688.
35. Ward P., Poitras E., Leblanc D., Letellier A., Brassard J., Plante D., Houde A. Comparative analysis of different TaqMan real-time RT-PCR assays for the detection of swine Hepatitis E virus and integration of Feline calicivirus as internal control. Journal of Applied Microbiology 2009, 106:1360-1369.
36. Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Applied and Environmental Microbiology 1997, 63:3741-3751.
37. Wobus C.E., Karst S.M., Thackray L.B., Chang K.O., Sosnovtsev S.V., Belliot G., Krug A., Mackenzie J.M., Green K.Y., Virgin H.W. Replication of norovirus in cell culture reveals a tropism for dendritic cells and macrophages. PLoS Biology 2004, 2:e432.
38. Wobus C.E., Thackray L.B., Virgin H.W. Murine norovirus: a model system to study norovirus biology and pathogenesis. Journal of Virology 2006, 80:5104-5112.