International standardisation of a method for detection of human pathogenic viruses in molluscan shellfish

Food and Environmental Virology

Volumn 2, Issue 3, 2010, Pages 146-155

  Lees, David ^a  

^a CENTRE FOR ENVIRONMENT   (United Kingdom)

Author keywords

Detection; Hepatitis A virus; Method; Norovirus; Shellfish; Standard

Indexed keywords

ARTICLE; CALCULATION; DNA PURIFICATION; ENZYME LINKED IMMUNOSORBENT ASSAY; EXTRACTION; GASTROENTERITIS; HEPATITIS A VIRUS; HUMAN; LAW; METHODOLOGY; NONHUMAN; NOROVIRUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUALITATIVE ANALYSIS; QUALITY CONTROL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION; SHELLFISH; STANDARDIZATION; VALIDATION PROCESS; VIRUS DETECTION;

HEPATITIS A VIRUS; NOROVIRUS;

EID: 77954758685     PISSN: 18670334     EISSN: 18670342     Source Type: Journal    
DOI: 10.1007/s12560-010-9042-5     Document Type: Article

References (52)

1. Anon. (2004a). Corrigendum to Regulation (EC) No 854/2004 of the European Parliament and of the Council of 29 April 2004 laying down specific rules for the organisation of official controls on products of animal origin intended for human consumption. Official Journal of the European Union, L226, 83-127.
2. Anon. (2004b). Commission Regulation (EC) No 882/2004 of the European Parliament and of the Council of 29th April 2004 on official controls performed to ensure verification of compliance with feed and food law, animal health and animal welfare rules. Official Journal of the European Union, L191, 1-52.
3. Anon. (2005). Commission Regulation (EC) No 2073/2005 of the European Parliament and of the Council of 15th November 2005 on microbiological criteria for foodstuffs. Official Journal of the European Union, L338, 1-26.
4. Atmar, R. L., Neill, F. H., Romalde, J. L., Le Guyader, F., Woodley, C. M., Metcalf, T. G., et al. (1995). Detection of norwalk virus and hepatitis a virus in shellfish tissues with the pcr. Applied and Environmental Microbiology, 61, 3014-3018.
5. Boom, R., Sol, C. J. A., Salimans, M. M. M., Jansen, C. L., Wertheim van Dillen, P. M. E., & van der Noordaa, J. (1990). Rapid and simple method for purification of nucleic acids. Journal of Clinical Microbiology, 28, 495-503.
6. Bosch, A., Abad, F. X., Gajardo, R., & Pintó, R. M. (1994). Should shellfish be purified before public consumption? The Lancet, 344, 1024-1025.
7. Bosch, A., Sanchez, G., Le Guyader, F., Vanaclocha, H., Haugarreau, L., & Pinto, R. M. (2001a). Human enteric viruses in coquina clams associated with a large hepatitis A outbreak. Water Science and Technology, 43(2001), 61-65.
8. Bosch, A., Sánchez, G., Le Guyader, F., Vanaclocha, H., Haugarreau, L., & Pintó, R. M. (2001b). Human enteric viruses in Coquina clams associated with a large hepatitis A outbreak. Water Science and Technology, 43, 61-65.
9. Boxman, I. L. A., Tilburg, J. J. H. C., te Loeke, N. A. J. M., Vennema, H., Jonker, K., de Boer, E., et al. (2006). Detection of noroviruses in shellfish in the Netherlands. International Journal of Food Microbiology, 108, 391-396.
10. Cheng, P. K. C., Wong, D. K. K., Chung, T. W. H., & Lim, W. W. L. (2005). Norovirus contamination found in oysters worldwide. Journal of Medical Virology, 76, 593-597.
11. Chironna, M., Germinario, C., Demedici, D., Fiore, A., DiPasquale, S., Quarto, M., et al. (2002). Detection of hepatitis A virus in mussels from different sources marketed in Puglia region (South Italy). International Journal of Food Microbiology, 75, 11-18.
12. Conaty, S., Bird, P., Bell, G., Kraa, E., Grohmann, G., & McAnulty, J. M. (2000). Hepatitis A in New South Wales, Australia, from consumption of oysters: The first reported outbreak. Epidemiology and Infection, 124, 121-130.
13. Costafreda, M. I., Bosch, A., & Pintó, R. M. (2006). Development, evaluation, and standardization of a real-time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples. Applied and Environmental Microbiology, 72(6), 3846-3855.
14. Costantini, V., Loisy, F., Joens, L., Le Guyader, F. S., & Saif, L. J. (2006). Human and animal enteric caliciviruses in oysters from different coastal regions of the United States. Applied and Environmental Microbiology, 72, 1800-1809.
15. da Silva, A. K., Le Saux, J. C., Parnaudeau, S., Pommepuy, M., Elimelech, M., & Le Guyader, F. S. (2007). Evaluation of removal of noroviruses during wastewater treatment, using Real-Time Reverse Transcription-PCR: Different behaviors of genogroups I and II. Applied and Environmental Microbiology, 73, 7891-7897.
16. Doyle, A., Barataud, D., Gallay, A., Thiolet, J. M., Le Guyager, S., Kohli, E., et al. (2004). Norovirus foodborne outbreaks associated with the consumption of oysters from the Etang de Thau, France, December. Euro Surveillance, 9, 24-26.
17. Flannery, J., Keaveney, S., & Doré, W. (2009). Use of FRNA bacteriophages to indicate the risk of norovirus contamination in irish oysters. Journal of Food Protection, 72, 2358-2362.
18. Formiga-Cruz, M., Tofiño-Quesada, G., Bofill-Mas, S., Lees, D. N., Henshilwood, K., Allard, A. K., et al. (2002). Distribution of human virus contamination in shellfish from different growing areas in Greece, Spain, Sweden, and the United Kingdom. Applied and Environmental Microbiology, 68(12), 5990-5998.
19. Green, J., Henshilwood, K., Gallimore, C. I., Brown, D. W. G., & Lees, D. N. (1998). A nested reverse transcriptase pcr assay for detection of small round-structured viruses in environmentally contaminated molluscan shellfish. Applied and Environmental Microbiology, 64, 858-863.
20. ISO 16140: 2003. Microbiology of food and animal feeding stuffs-protocol for the validation of alternative methods.
21. ISO 20837: 2006. Microbiology of food and animal feeding stuffs-polymerase chain reaction (PCR) for the detection of food-borne pathogens-requirements for sample preparation for qualitative detection.
22. ISO 20838: 2006. Microbiology of food and animal feeding stuffs-polymerase chain reaction (PCR) for the detection of food-borne pathogens-requirements for amplification and detection for qualitative methods.
23. ISO 22174: 2005. Microbiology of food and animal feeding stuffs-polymerase chain reaction (PCR) for the detection of food-borne pathogens-general requirements and definitions.
24. ISO/DIS 22118. Microbiology of food and animal feeding stuffs-polymerase chain reaction (PCR) for the detection of food-borne pathogens-performance characteristics of molecular detection methods.
25. ISO/DIS 22119. Microbiology of food and animal feeding stuffs-real-time polymerase chain reaction (PCR) for the detection of food-borne pathogens-general requirements and definitions.
26. Jothikumar, N., Lowther, J. A., Henshilwood, K., Lees, D. N., Hill, V. R., & Vinjé, J. (2005). Rapid and sensitive detection of noroviruses by using TaqMan-based one-step reverse transcription-PCR assays and application to naturally contaminated shellfish samples. Applied and Environmental Microbiology, 71(4), 1870-1875.
27. Kageyama, T., Kojima, S., Shinohara, M., Uchida, K., Fukushi, S., Hoshino, F. B., et al. (2003). Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. Journal of Clinical Microbiology, 41(4), 1548-1557.
28. Keaveney, S., Flannery, J., Guilfoyle, F., & Dore, W. (2009). Preliminary results from a survey of oyster production areas in Ireland for norovirus. In Proceedings of the 6th international conference on molluscan shellfish safety, New Zealand 2007. The Royal Society of New Zealand.
29. Le Guyader, F. S., Bon, F., DeMedici, D., Parnaudeau, S., Bertome, A., et al. (2006a). Detection of noroviruses in an international gastroenteritis outbreak linked to oyster consumption. Journal of Clinical Microbiology, 44, 3878-3882.
30. Le Guyader, F., Haugarreau, L., Miossec, L., Dubois, E., & Pommepuy, M. (2000). Three-year study to assess human enteric viruses in shellfish. Applied and Environmental Microbiology, 66(8), 3241-3248.
31. Le Guyader, F. S., Le Saux, J. C., Ambert-Balay, K., Krol, J., Serais, O., Parnaudeau, S., et al. (2008). Aichi virus, norovirus, astrovirus, enterovirus, and rotavirus involved in clinical cases from a French oyster-related gastroenteritis outbreak. Journal of Clinical Microbiology, 46, 4011-4017.
32. Le Guyader, F. S., Loisy, F., Atmar, R. L., Hutson, A. M., Estes, M. K., Ruvoen-Clouet, N., et al. (2006b). Norwalk virus specific binding to oyster digestive tissues. Emerging Infectious Diseases, 12, 931-936.
33. Le Guyader, F. S., Neill, F. H., Dubois, E., Bon, F., Loisy, F., Kohli, E., et al. (2003). A semi-quantitative approach to estimate Norwalk-like virus contamination of oysters implicated in an outbreak. International Journal of Food Microbiology, 87, 107-112.
34. Le Guyader, F. S., Parnaudeau, S., Schaeffer, J., Bosch, A., Loisy, F., Pommepuy, M., et al. (2009). Detection and quantification of noroviruses in shellfish. Applied and Environmental Microbiology, 75, 618-624.
35. Lees, D. N. (2000). Viruses and bivalve shellfish. International Journal of Food Microbiology, 59, 81-116.
36. Loisy, F., Atmar, R. L., Guillon, P., LeCann, P., Pommepuy, M., & Le Guyader, F. S. (2005). Real-time RT-PCR for norovirus screening in shellfish. Journal of Virological Methods, 123, 1-7.
37. Lowther, J. A., Avant, J. M., Gizynski, K., Rangdale, R. E., & Lees, D. N. (2010). Comparison between quantitative real-time reverse transcription PCR results for norovirus in oysters and self-reported gastroenteric illness in restaurant customers. Journal of Food Protection, 73, 305-311.
38. Lowther, J. A., Henshilwood, K., & Lees, D. N. (2008). Determination of norovirus contamination in oysters from two commercial harvesting areas over an extended period, using semiquantitative real-time reverse transcription PCR. Journal of Food Protection, 71, 1427-1433.
39. Metcalf, T. G., Moulton, E., & Eckerson, D. (1980). Improved method and test strategy for recovery of enteric viruses from shellfish. Applied and Environmental Microbiology, 39, 141-152.
40. Nishida, T., Kimura, H., Saitoh, M., Shinohara, M., Kato, M., et al. (2003). Detection, quantitation, and phylogenic analysis of noroviruses in Japanese oysters. Applied and Environmental Microbiology, 69, 5782-5786.
41. Pintó, R. M., Costafreda, M. I., & Bosch, A. (2009). Risk assessment in shellfish-borne outbreaks of hepatitis A. Applied and Environmental Microbiology, 75, 7350-7355.
42. Potasman, I., Paz, A., & Odeh, M. (2002). Infectious outbreaks associated with bivalve shellfish consumption: A worldwide perspective. Clinical Infectious Disease, 35, 921-928.
43. Romalde, J. L., Estes, M. K., Szucs, G., Atmar, R. L., Woodley, C. M., & Metcalf, T. G. (1994). In situ detection of hepatitis A virus in cell cultures and shellfish tissues. Applied and Environmental Microbiology, 60, 1921-1926.
44. Sánchez, G., Pintó, R. M., Vanaclocha, H., & Bosch, A. (2002). Molecular characterization of hepatitis A virus isolates from a transcontinental shellfish-borne outbreak. Journal of Clinical Microbiology, 40, 4148-4155.
45. Shieh, Y. C., Khudyakov, Y. E., Xia, G., Ganova-Raeva, L. M., Khambaty, F. M., Woods, J. W., et al. (2007). Molecular confirmation of oysters as the vector for hepatitis A in a 2005 multistate outbreak. Journal of Food Protection, 70, 145-150.
46. Shieh, Y. C., Monroe, S., Fankhauser, R. L., Langlois, G. W., Burkhardt, W., & Baric, R. S. (2000). Detection of Norwalk-like virus in shellfish implicated in illness. The Journal of Infectious Diseases, 181(5), 1523-1874.
47. Simmons, G., Garbutt, C., Hewitt, J., & Greening, G. (2007). A New Zealand outbreak of norovirus gastroenteritis linked to the consumption of imported raw Korean oysters. New Zealand Medical Journal, 120, U2773.
48. Svraka, S., Duizer, E., Vennema, H., de Bruin, E., van der Veer, B., Dorresteijn, B., et al. (2007). Etiological role of viruses in outbreaks of acute gastroenteritis in The Netherlands from 1994 through 2005. Journal of Clinical Microbiology, 45, 1389-1394.
49. Thompson, M., Ellison, S. L. R., & Wood, R. (2002). Harmonized guidelines for single laboratory validation of methods of analysis (IUPAC technical report). Pure and Applied Chemistry, 74(5), 835-855.
50. Vilarino, M. L., Le Guyader, F. S., Polo, D., Schaeffer, J., Krol, J., & Romalde, J. L. (2009). Assessment of human enteric viruses in cultured and wild bivalve molluscs. International Microbiology, 12, 145-151.
51. Westrell, T., Dusch, V., Ethelberg, S., Harris, J., Hjertqvist, M., Jourdan-da Silva, N., Koller, A., Lenglet, A., Lisby, M., & Vold, L. (2010). Norovirus outbreaks linked to oyster consumption in the United Kingdom, Norway, France, Sweden and Denmark, 2010. Euro Surveill, 15, pii: 19524.
52. Wheeler, J. G., Sethi, D., Cowden, J. M., Wall, P. G., Rodrigues, L. C., Tompkins, D. S., et al. (1999). Study of infectious intestinal disease in England: Rates in the community, presenting to general practice, and reported to national surveillance. BMJ, 318, 1046-1050.