-
1
-
-
0344338368
-
Gene gating: A hypothesis
-
PMID:3866238
-
Blobel G. Gene gating: a hypothesis. Proc Nat Acad Sci U S A 1985; 82:8527-9; PMID:3866238; http://dx.doi.org/10.1073/pnas.82.24.8527
-
(1985)
Proc Nat Acad Sci U S A
, vol.82
, pp. 8527-8529
-
-
Blobel, G.1
-
2
-
-
84875190221
-
Genome architecture: Domain organization of interphase chromosomes
-
PMID:23498936
-
Bickmore WA, van Steensel B. Genome architecture: domain organization of interphase chromosomes. Cell 2013; 152:1270-84; PMID:23498936; http://dx.doi.org/10.1016/j.cell.2013.02.001
-
(2013)
Cell
, vol.152
, pp. 1270-1284
-
-
Bickmore, W.A.1
Van Steensel, B.2
-
3
-
-
84857684893
-
Structure, function and dynamics of nuclear subcompartments
-
PMID:22227228
-
Cardoso MC, Schneider K, Martin RM, Leonhardt H. Structure, function and dynamics of nuclear subcompartments. Curr Opin Cell Biol 2012; 24:79-85; PMID:22227228; http://dx.doi.org/10.1016/j.ceb. 2011.12.009
-
(2012)
Curr Opin Cell Biol
, vol.24
, pp. 79-85
-
-
Cardoso, M.C.1
Schneider, K.2
Martin, R.M.3
Leonhardt, H.4
-
4
-
-
84875200698
-
Functional implications of genome topology
-
PMID:23463314
-
Cavalli G, Misteli T. Functional implications of genome topology. Nat Struct Mol Biol 2013; 20:290-9; PMID:23463314; http://dx.doi.org/10.1038/nsmb.2474
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 290-299
-
-
Cavalli, G.1
Misteli, T.2
-
5
-
-
84877831606
-
Chromatin organization: Form to function
-
PMID:23274160
-
de Graaf CA, van Steensel B. Chromatin organization: form to function. Curr Opin Genet Dev 2013; 23:185-90; PMID:23274160; http://dx.doi.org/10.1016/j.gde.2012.11.011
-
(2013)
Curr Opin Genet Dev
, vol.23
, pp. 185-190
-
-
De Graaf, C.A.1
Van Steensel, B.2
-
6
-
-
77954457349
-
Chromosome territories
-
PMID:20300217
-
Cremer T, Cremer M. Chromosome territories. Cold Spring Harb Perspect Biol 2010; 2:a003889; PMID:20300217; http://dx.doi.org/10.1101/cshpers pect.a003889
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
-
-
Cremer, T.1
Cremer, M.2
-
7
-
-
78650113662
-
Nuclear architecture in developmental biology and cell specialisation
-
PMID:21366985
-
Cremer T, Zakhartchenko V. Nuclear architecture in developmental biology and cell specialisation. Reprod, Fert Dev 2011; 23:94-106; PMID:21366985; http://dx.doi.org/10.1071/RD10249
-
(2011)
Reprod, Fert Dev
, vol.23
, pp. 94-106
-
-
Cremer, T.1
Zakhartchenko, V.2
-
8
-
-
84872975354
-
Chromatin structure outside and inside the nucleus
-
PMID:23348669
-
Ghirlando R, Felsenfeld G. Chromatin structure outside and inside the nucleus. Biopolymers 2013; 99:225-32; PMID:23348669; http://dx.doi.org/10.1002/bip.22157
-
(2013)
Biopolymers
, vol.99
, pp. 225-232
-
-
Ghirlando, R.1
Felsenfeld, G.2
-
9
-
-
84876838711
-
The hierarchy of the 3D genome
-
PMID:23473598
-
Gibcus JH, Dekker J. The hierarchy of the 3D genome. Mol Cell 2013; 49:773-82; PMID:23473598; http://dx.doi.org/10.1016/j.molcel.2013.02.011
-
(2013)
Mol Cell
, vol.49
, pp. 773-782
-
-
Gibcus, J.H.1
Dekker, J.2
-
10
-
-
77952936833
-
Chromatin dynamics
-
PMID:20462379
-
Hubner MR, Spector DL. Chromatin dynamics. Annu Rev Biophys 2010; 39:471-89; PMID:20462379; http://dx.doi.org/10.1146/annurev. biophys.093008.131348
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 471-489
-
-
Hubner, M.R.1
Spector, D.L.2
-
11
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
-
PMID:17230197
-
Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat Rev Genet 2007; 8:104-15; PMID:17230197; http://dx.doi.org/10.1038/nrg2041
-
(2007)
Nat Rev Genet
, vol.8
, pp. 104-115
-
-
Lanctot, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
12
-
-
79953162695
-
Locking the genome: Nuclear organization and cell fate
-
PMID:21345665
-
Meister P, Mango SE, Gasser SM. Locking the genome: nuclear organization and cell fate. Curr Opin Genet Dev 2011; 21:167-74; PMID:21345665; http://dx.doi.org/10.1016/j.gde.2011.01.023
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 167-174
-
-
Meister, P.1
Mango, S.E.2
Gasser, S.M.3
-
13
-
-
1442288553
-
The spatial organization of the genome in mammalian cells
-
PMID:15196468
-
Pederson T. The spatial organization of the genome in mammalian cells. Curr Opin Genet Dev 2004; 14:203-9; PMID:15196468; http://dx.doi.org/10.1016/j.gde.2004.02.008
-
(2004)
Curr Opin Genet Dev
, vol.14
, pp. 203-209
-
-
Pederson, T.1
-
14
-
-
84855219582
-
A view of the chromatin landscape
-
PMID:22172345
-
Rapkin LM, Anchel DR, Li R, Bazett-Jones DP. A view of the chromatin landscape. Micron 2012; 43:150-8; PMID:22172345; http://dx.doi.org/10.1016/j.micron.2011.11.007
-
(2012)
Micron
, vol.43
, pp. 150-158
-
-
Rapkin, L.M.1
Anchel, D.R.2
Li, R.3
Bazett-Jones, D.P.4
-
15
-
-
84870367830
-
ChIAPET analysis of transcriptional chromatin interactions
-
PMID:22926262
-
Zhang J, Poh HM, Peh SQ, Sia YY, Li G, Mulawadi FH, Goh Y, Fullwood MJ, Sung WK, Ruan X, et al. ChIAPET analysis of transcriptional chromatin interactions. Methods 2012; 58:289-99; PMID:22926262; http://dx.doi.org/10.1016/j.ymeth.2012.08.009
-
(2012)
Methods
, vol.58
, pp. 289-299
-
-
Zhang, J.1
Poh, H.M.2
Peh, S.Q.3
Sia, Y.Y.4
Li, G.5
Mulawadi, F.H.6
Goh, Y.7
Fullwood, M.J.8
Sung, W.K.9
Ruan, X.10
-
16
-
-
77956272401
-
Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo
-
PMID:20479880
-
Ahmed K, Dehghani H, Rugg-Gunn P, Fussner E, Rossant J, Bazett-Jones DP. Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo. PloS One 2010; 5: e10531; PMID:20479880; http://dx.doi.org/10.1371/journal.pone.0010531
-
(2010)
Plos One
, vol.5
-
-
Ahmed, K.1
Dehghani, H.2
Rugg-Gunn, P.3
Fussner, E.4
Rossant, J.5
Bazett-Jones, D.P.6
-
17
-
-
84867671385
-
3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development
-
PMID:23095683
-
Aguirre-Lavin T, Adenot P, Bonnet-Garnier A, Lehmann G, Fleurot R, Boulesteix C, Debey P, Beaujean N. 3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development. BMC Dev Biol 2012; 12:30; PMID:23095683; http://dx.doi.org/10.1186/1471-213X-12-30
-
(2012)
BMC Dev Biol
, vol.12
, pp. 30
-
-
Aguirre-Lavin, T.1
Adenot, P.2
Bonnet-Garnier, A.3
Lehmann, G.4
Fleurot, R.5
Boulesteix, C.6
Debey, P.7
Beaujean, N.8
-
18
-
-
68849091134
-
Reprogramming of active and repressive histone modifications following nuclear transfer with rabbit mesenchymal stem cells and adult fibroblasts
-
PMID:19508112
-
Brero A, Hao R, Schieker M, Wierer M, Wolf E, Cremer T, Zakhartchenko V. Reprogramming of active and repressive histone modifications following nuclear transfer with rabbit mesenchymal stem cells and adult fibroblasts. Cloning Stem Cells 2009; 11:319-29; PMID:19508112; http://dx.doi.org/10.1089/clo.2008.0083
-
(2009)
Cloning Stem Cells
, vol.11
, pp. 319-329
-
-
Brero, A.1
Hao, R.2
Schieker, M.3
Wierer, M.4
Wolf, E.5
Cremer, T.6
Zakhartchenko, V.7
-
19
-
-
67349252324
-
Changes of higher order chromatin arrangements during major genome activation in bovine preimplantation embryos
-
PMID:19254712
-
Koehler D, Zakhartchenko V, Froenicke L, Stone G, Stanyon R, Wolf E, Cremer T, Brero A. Changes of higher order chromatin arrangements during major genome activation in bovine preimplantation embryos. Exp Cell Res 2009; 315:2053-63; PMID:19254712; http://dx.doi.org/10.1016/j.yexcr. 2009.02.016
-
(2009)
Exp Cell Res
, vol.315
, pp. 2053-2063
-
-
Koehler, D.1
Zakhartchenko, V.2
Froenicke, L.3
Stone, G.4
Stanyon, R.5
Wolf, E.6
Cremer, T.7
Brero, A.8
-
20
-
-
34248162957
-
Epigenomic differentiation in mouse preimplantation nuclei of biparental, parthenote and cloned embryos
-
PMID:17447149
-
Merico V, Barbieri J, Zuccotti M, Joffe B, Cremer T, Redi CA, Solovei I, Garagna S. Epigenomic differentiation in mouse preimplantation nuclei of biparental, parthenote and cloned embryos. Chromosome Res: Int J Mol Supramol Evolut Aspects Chromosome Biol 2007; 15:341-60; PMID:17447149
-
(2007)
Chromosome Res: Int J Mol Supramol Evolut Aspects Chromosome Biol
, vol.15
, pp. 341-360
-
-
Merico, V.1
Barbieri, J.2
Zuccotti, M.3
Joffe, B.4
Cremer, T.5
Redi, C.A.6
Solovei, I.7
Garagna, S.8
-
21
-
-
84861665776
-
5-Methylcytosine and 5-hydroxymethylcytosine spatiotemporal profiles in the mouse zygote
-
PMID:22693592
-
Salvaing J, Aguirre-Lavin T, Boulesteix C, Lehmann G, Debey P, Beaujean N. 5-Methylcytosine and 5-hydroxymethylcytosine spatiotemporal profiles in the mouse zygote. PloS One 2012; 7:e38156; PMID:22693592; http://dx.doi.org/10.1371/journal. pone.0038156
-
(2012)
Plos One
, vol.7
-
-
Salvaing, J.1
Aguirre-Lavin, T.2
Boulesteix, C.3
Lehmann, G.4
Debey, P.5
Beaujean, N.6
-
22
-
-
84874045078
-
Heterochromatin reprogramming in rabbit embryos after fertilization, intra-, and inter-species SCNT correlates with preimplantation development
-
PMID:23221012
-
Yang CX, Liu Z, Fleurot R, Adenot P, Duranthon V, Vignon X, Zhou Q, Renard JP, Beaujean N. Heterochromatin reprogramming in rabbit embryos after fertilization, intra-, and inter-species SCNT correlates with preimplantation development. Reproduction 2013; 145:149-59; PMID:23221012; http://dx.doi.org/10.1530/REP-11-0421
-
(2013)
Reproduction
, vol.145
, pp. 149-159
-
-
Yang, C.X.1
Liu, Z.2
Fleurot, R.3
Adenot, P.4
Duranthon, V.5
Vignon, X.6
Zhou, Q.7
Renard, J.P.8
Beaujean, N.9
-
23
-
-
18044364584
-
Cell-by-cell dissection of gene expression and chromosomal interactions reveals consequences of nuclear reorganization
-
PMID:15737020
-
Harmon B, Sedat J. Cell-by-cell dissection of gene expression and chromosomal interactions reveals consequences of nuclear reorganization. PLoS Biol 2005; 3:e67; PMID:15737020; http://dx.doi.org/10.1371/journal.pbio.0030067
-
(2005)
Plos Biol
, vol.3
-
-
Harmon, B.1
Sedat, J.2
-
24
-
-
2942679507
-
Form follows function: The genomic organization of cellular differentiation
-
PMID:15198979
-
Kosak ST, Groudine M. Form follows function: The genomic organization of cellular differentiation. Genes Development 2004; 18:1371-84; PMID:15198979; http://dx.doi.org/10.1101/gad.1209304
-
(2004)
Genes Development
, vol.18
, pp. 1371-1384
-
-
Kosak, S.T.1
Groudine, M.2
-
25
-
-
34249693566
-
Quantitative monitoring of pluripotency gene activation after somatic cloning in cattle
-
PMID:17314316
-
Wuensch A, Habermann FA, Kurosaka S, Klose R, Zakhartchenko V, Reichenbach HD, Sinowatz F, McLaughlin KJ, Wolf E. Quantitative monitoring of pluripotency gene activation after somatic cloning in cattle. Biol Reprod 2007; 76:983-91; PMID:17314316; http://dx.doi.org/10.1095/biolreprod.106.058776
-
(2007)
Biol Reprod
, vol.76
, pp. 983-991
-
-
Wuensch, A.1
Habermann, F.A.2
Kurosaka, S.3
Klose, R.4
Zakhartchenko, V.5
Reichenbach, H.D.6
Sinowatz, F.7
McLaughlin, K.J.8
Wolf, E.9
-
26
-
-
67651172792
-
Gene expression during minor genome activation in preimplantation bovine development
-
PMID:19501393
-
Kanka J, Kepkova K, Nemcova L. Gene expression during minor genome activation in preimplantation bovine development. Theriogenology 2009; 72:572-83; PMID:19501393; http://dx.doi.org/10.1016/j. theriogenology.2009.04.014
-
(2009)
Theriogenology
, vol.72
, pp. 572-583
-
-
Kanka, J.1
Kepkova, K.2
Nemcova, L.3
-
27
-
-
84896496137
-
Fine mapping of genome activation in bovine embryos by RNA sequencing
-
PMID:24591639
-
Graf A, Krebs S, Zakhartchenko V, Schwalb B, Blum H, Wolf E. Fine mapping of genome activation in bovine embryos by RNA sequencing. Proc Nat Acad Sci U S A 2014; 111:4139-44; PMID:24591639
-
(2014)
Proc Nat Acad Sci U S A
, vol.111
, pp. 4139-4144
-
-
Graf, A.1
Krebs, S.2
Zakhartchenko, V.3
Schwalb, B.4
Blum, H.5
Wolf, E.6
-
28
-
-
70350023619
-
The maternal-to-zygotic transition: A play in two acts
-
PMID:19700615
-
Tadros W, Lipshitz HD. The maternal-to-zygotic transition: a play in two acts. Development 2009; 136:3033-42; PMID:19700615; http://dx.doi.org/10.1242/dev.033183
-
(2009)
Development
, vol.136
, pp. 3033-3042
-
-
Tadros, W.1
Lipshitz, H.D.2
-
29
-
-
84881173034
-
The maternal to zygotic transition in mammals
-
PMID:23352575
-
Li L, Lu X, Dean J. The maternal to zygotic transition in mammals. Mol Aspects Med 2013; 34:919-38; PMID:23352575; http://dx.doi.org/10.1016/j.mam.2013.01.003
-
(2013)
Mol Aspects Med
, vol.34
, pp. 919-938
-
-
Li, L.1
Lu, X.2
Dean, J.3
-
30
-
-
35648937652
-
Gene expression in the in vitro-produced preimplantation bovine embryos
-
PMID:17967215
-
Badr H, Bongioni G, Abdoon AS, Kandil O, Puglisi R. Gene expression in the in vitro-produced preimplantation bovine embryos. Zygote 2007; 15:355-67; PMID:17967215; http://dx.doi.org/10.1017/S0967199407004315
-
(2007)
Zygote
, vol.15
, pp. 355-367
-
-
Badr, H.1
Bongioni, G.2
Abdoon, A.S.3
Kandil, O.4
Puglisi, R.5
-
31
-
-
0022871030
-
Autoradiographic detection of the earliest stage of [3H]-uridine incorporation into the cow embryo
-
PMID:2436695
-
Camous S, Kopecny V, Flechon JE. Autoradiographic detection of the earliest stage of [3H]-uridine incorporation into the cow embryo. Biol Cell 1986; 58:195-200; PMID:2436695; http://dx.doi.org/10.1111/j.1768-322X.1986.tb00506.x
-
(1986)
Biol Cell
, vol.58
, pp. 195-200
-
-
Camous, S.1
Kopecny, V.2
Flechon, J.E.3
-
32
-
-
0034137048
-
Zygotic and embryonic gene expression in cow: A review of timing and mechanisms of early gene expression as compared with other species
-
PMID:10840878
-
Memili E, First NL. Zygotic and embryonic gene expression in cow: a review of timing and mechanisms of early gene expression as compared with other species. Zygote 2000; 8:87-96; PMID:10840878; http://dx.doi.org/10.1017/S0967199400000861
-
(2000)
Zygote
, vol.8
, pp. 87-96
-
-
Memili, E.1
First, N.L.2
-
33
-
-
34248651844
-
Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos
-
PMID:17142320
-
Misirlioglu M, Page GP, Sagirkaya H, Kaya A, Parrish JJ, First NL, Memili E. Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. Proc Nat Acad Sci U S A 2006; 103:18905-10; PMID:17142320; http://dx.doi.org/10.1073/pnas.0608247103
-
(2006)
Proc Nat Acad Sci U S A
, vol.103
, pp. 18905-18910
-
-
Misirlioglu, M.1
Page, G.P.2
Sagirkaya, H.3
Kaya, A.4
Parrish, J.J.5
First, N.L.6
Memili, E.7
-
34
-
-
62449265067
-
Unveiling the bovine embryo transcriptome during the maternal-to-embryonic transition
-
PMID:18987256
-
Vigneault C, Gravel C, Vallee M, McGraw S, Sirard MA. Unveiling the bovine embryo transcriptome during the maternal-to-embryonic transition. Reproduction 2009; 137:245-57; PMID:18987256; http://dx.doi.org/10.1530/REP-08-0079
-
(2009)
Reproduction
, vol.137
, pp. 245-257
-
-
Vigneault, C.1
Gravel, C.2
Vallee, M.3
McGraw, S.4
Sirard, M.A.5
-
35
-
-
84921925234
-
Positional changes of a pluripotency marker gene during structural reorganization of fibroblast nuclei in cloned early bovine embryos
-
(Under Review)
-
Popken J, Koehler D, Brero A, Wuensch A, Guengoer T, Thormeyer T, Wolf E, Cremer T, Zakhartchenko V. Positional changes of a pluripotency marker gene during structural reorganization of fibroblast nuclei in cloned early bovine embryos. Nucleus 2014 5: 6.; http://dx.doi.org/10.4161/19491034.2014.979712 (Under Review)
-
(2014)
Nucleus
, vol.5
, pp. 6
-
-
Popken, J.1
Koehler, D.2
Brero, A.3
Wuensch, A.4
Guengoer, T.5
Thormeyer, T.6
Wolf, E.7
Cremer, T.8
Zakhartchenko, V.9
-
36
-
-
80052409661
-
Functional nuclear organization of transcription and DNA replication: A topographical marriage between chromatin domains and the interchromatin compartment
-
PMID:21467142
-
Markaki Y, Gunkel M, Schermelleh L, Beichmanis S, Neumann J, Heidemann M, Leonhardt H, Eick D, Cremer C, Cremer T. Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. Cold Spring Harbor Symposia Quant Biol 2010; 75:475-92; PMID:21467142; http://dx.doi.org/10.1101/sqb.2010.75.042
-
(2010)
Cold Spring Harbor Symposia Quant Biol
, vol.75
, pp. 475-492
-
-
Markaki, Y.1
Gunkel, M.2
Schermelleh, L.3
Beichmanis, S.4
Neumann, J.5
Heidemann, M.6
Leonhardt, H.7
Eick, D.8
Cremer, C.9
Cremer, T.10
-
37
-
-
84859845974
-
The potential of 3DFISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture
-
PMID:22508100
-
Markaki Y, Smeets D, Fiedler S, Schmid VJ, Schermelleh L, Cremer T, Cremer M. The potential of 3DFISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture. BioEssays: News Reviews Mol Cell Dev Biology 2012; 34:412-26; PMID:22508100; http://dx.doi.org/10.1002/bies.201100176
-
(2012)
Bioessays: News Reviews Mol Cell Dev Biology
, vol.34
, pp. 412-426
-
-
Markaki, Y.1
Smeets, D.2
Fiedler, S.3
Schmid, V.J.4
Schermelleh, L.5
Cremer, T.6
Cremer, M.7
-
38
-
-
70349847560
-
Revealing the high-resolution threedimensional network of chromatin and interchromatin space: A novel electron-microscopic approach to reconstructing nuclear architecture
-
PMID:19731052
-
Rouquette J, Genoud C, Vazquez-Nin GH, Kraus B, Cremer T, Fakan S. Revealing the high-resolution threedimensional network of chromatin and interchromatin space: a novel electron-microscopic approach to reconstructing nuclear architecture. Chromosome Res: Int J Mol Supramol Evol Aspects Chromosome Biol 2009; 17:801-10; PMID:19731052; http://dx.doi.org/10.1007/s10577-009-9070-x
-
(2009)
Chromosome Res: Int J Mol Supramol Evol Aspects Chromosome Biol
, vol.17
, pp. 801-810
-
-
Rouquette, J.1
Genoud, C.2
Vazquez-Nin, G.H.3
Kraus, B.4
Cremer, T.5
Fakan, S.6
-
39
-
-
84934437931
-
Correlative microscopy of individual cells: Sequential application of microscopic systems with increasing resolution to study the nuclear landscape
-
PMID:23980016
-
Huebner B, Cremer T, Neumann J. Correlative microscopy of individual cells: sequential application of microscopic systems with increasing resolution to study the nuclear landscape. Methods Mol Biol 2013; 1042:299-336; PMID:23980016; http://dx.doi.org/10.1007/978-1-62703-526-2_21
-
(2013)
Methods Mol Biol
, vol.1042
, pp. 299-336
-
-
Huebner, B.1
Cremer, T.2
Neumann, J.3
-
40
-
-
84900824181
-
Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci
-
PMID:25057298
-
Smeets D, Markaki Y, Schmid VJ, Kraus F, Tattermusch A, Cerase A, Sterr M, Fiedler S, Demmerle J, Popken J, et al. Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci. Epigenetics Chromatin 2014; 7:8; PMID:25057298; http://dx.doi.org/10.1186/1756-8935-7-8
-
(2014)
Epigenetics Chromatin
, vol.7
, pp. 8
-
-
Smeets, D.1
Markaki, Y.2
Schmid, V.J.3
Kraus, F.4
Tattermusch, A.5
Cerase, A.6
Sterr, M.7
Fiedler, S.8
Demmerle, J.9
Popken, J.10
-
41
-
-
77954457057
-
Functional nuclear architecture studied by microscopy: Present and future
-
PMID:20630466
-
Rouquette J, Cremer C, Cremer T, Fakan S. Functional nuclear architecture studied by microscopy: present and future. Int Rev Cell Mol Biol 2010; 282:1-90; PMID:20630466; http://dx.doi.org/10.1016/S1937-6448(10)82001-5
-
(2010)
Int Rev Cell Mol Biol
, vol.282
, pp. 1-90
-
-
Rouquette, J.1
Cremer, C.2
Cremer, T.3
Fakan, S.4
-
42
-
-
0033758019
-
Chromosome territories, interchromatin domain compartment, and nuclearmatrix: An integrated view of the functional nuclear architecture
-
PMID:11186332
-
Cremer T, Kreth G, Koester H, Fink RH, Heintzmann R, Cremer M, Solovei I, Zink D, Cremer C. Chromosome territories, interchromatin domain compartment, and nuclearmatrix: an integrated view of the functional nuclear architecture. Crit Rev Eukaryotic Gene Exp 2000; 10:179-212; PMID:11186332; http://dx.doi.org/10.1615/CritRevEukarGeneExpr.v10.i2.60
-
(2000)
Crit Rev Eukaryotic Gene Exp
, vol.10
, pp. 179-212
-
-
Cremer, T.1
Kreth, G.2
Koester, H.3
Fink, R.H.4
Heintzmann, R.5
Cremer, M.6
Solovei, I.7
Zink, D.8
Cremer, C.9
-
43
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
PMID:11283701
-
Cremer T, Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2001; 2:292-301; PMID:11283701; http://dx.doi.org/10.1038/35066075
-
(2001)
Nat Rev Genet
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
44
-
-
77953107225
-
Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells
-
PMID:20453848
-
Mor A, Suliman S, Ben-Yishay R, Yunger S, Brody Y, Shav-Tal Y. Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells. Nat Cell Biol 2010; 12:543-52; PMID:20453848; http://dx.doi.org/10.1038/ncb2056
-
(2010)
Nat Cell Biol
, vol.12
, pp. 543-552
-
-
Mor, A.1
Suliman, S.2
Ben-Yishay, R.3
Yunger, S.4
Brody, Y.5
Shav-Tal, Y.6
-
45
-
-
0032917782
-
Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection
-
PMID:9880337
-
Cmarko D, Verschure PJ, Martin TE, Dahmus ME, Krause S, Fu XD, van Driel R, Fakan S. Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection. Mol Biol Cell 1999; 10:211-23; PMID:9880337; http://dx.doi.org/10.1091/mbc.10.1.211
-
(1999)
Mol Biol Cell
, vol.10
, pp. 211-223
-
-
Cmarko, D.1
Verschure, P.J.2
Martin, T.E.3
Dahmus, M.E.4
Krause, S.5
Fu, X.D.6
Van Driel, R.7
Fakan, S.8
-
46
-
-
84865724519
-
Dynamic organization of transcription compartments is dependent on functional nuclear architecture
-
PMID:23009834
-
Maharana S, Sharma D, Shi X, Shivashankar GV. Dynamic organization of transcription compartments is dependent on functional nuclear architecture. Biophys J 2012; 103:851-9; PMID:23009834; http://dx.doi.org/10.1016/j.bpj.2012.06.036
-
(2012)
Biophys J
, vol.103
, pp. 851-859
-
-
Maharana, S.1
Sharma, D.2
Shi, X.3
Shivashankar, G.V.4
-
47
-
-
78651421795
-
Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei
-
PMID:21056558
-
Niedojadlo J, Perret-Vivancos C, Kalland KH, Cmarko D, Cremer T, van Driel R, Fakan S. Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei. Exp Cell Res 2011; 317:433-44; PMID:21056558; http://dx.doi.org/10.1016/j.yexcr.2010.10.026
-
(2011)
Exp Cell Res
, vol.317
, pp. 433-444
-
-
Niedojadlo, J.1
Perret-Vivancos, C.2
Kalland, K.H.3
Cmarko, D.4
Cremer, T.5
Van Driel, R.6
Fakan, S.7
-
48
-
-
0034329469
-
Fine structural in situ analysis of nascent DNA movement following DNA replication
-
PMID:11035926
-
Jaunin F, Visser AE, Cmarko D, Aten JA, Fakan S. Fine structural in situ analysis of nascent DNA movement following DNA replication. Exp Cell Res 2000; 260:313-23; PMID:11035926; http://dx.doi.org/10.1006/excr.2000.4999
-
(2000)
Exp Cell Res
, vol.260
, pp. 313-323
-
-
Jaunin, F.1
Visser, A.E.2
Cmarko, D.3
Aten, J.A.4
Fakan, S.5
-
49
-
-
78650304236
-
Charting histone modifications and the functional organization of mammalian genomes
-
PMID:21116306
-
Zhou VW, Goren A, Bernstein BE. Charting histone modifications and the functional organization of mammalian genomes. Nat Rev Genet 2011; 12:7-18; PMID:21116306; http://dx.doi.org/10.1038/nrg2905
-
(2011)
Nat Rev Genet
, vol.12
, pp. 7-18
-
-
Zhou, V.W.1
Goren, A.2
Bernstein, B.E.3
-
50
-
-
0017349967
-
Mithramycin and DIPI: A pair of fluorochromes specific for GC-and AT-rich DNA respectively
-
PMID:67077
-
Schnedl W, Breitenbach M, Stranzinger G. Mithramycin and DIPI: a pair of fluorochromes specific for GC-and AT-rich DNA respectively. Hum Genet 1977; 36:299-305; PMID:67077; http://dx.doi.org/10.1007/BF00446280
-
(1977)
Hum Genet
, vol.36
, pp. 299-305
-
-
Schnedl, W.1
Breitenbach, M.2
Stranzinger, G.3
-
52
-
-
0035046196
-
TO-PRO-3 is an optimal fluorescent dye for nuclear counterstaining in dual-colour FISH on paraffin sections
-
PMID:11405057
-
Bink K, Walch A, Feuchtinger A, Eisenmann H, Hutzler P, Hofler H, Werner M. TO-PRO-3 is an optimal fluorescent dye for nuclear counterstaining in dual-colour FISH on paraffin sections. Histochem Cell Biol 2001; 115:293-9; PMID:11405057
-
(2001)
Histochem Cell Biol
, vol.115
, pp. 293-299
-
-
Bink, K.1
Walch, A.2
Feuchtinger, A.3
Eisenmann, H.4
Hutzler, P.5
Hofler, H.6
Werner, M.7
-
53
-
-
0141613756
-
Phosphorylation of serine 10 in histone H3, what for?
-
PMID:12917355
-
Prigent C, Dimitrov S. Phosphorylation of serine 10 in histone H3, what for? J Cell Sci 2003; 116:3677-85; PMID:12917355; http://dx.doi.org/10.1242/jcs.00735
-
(2003)
J Cell Sci
, vol.116
, pp. 3677-3685
-
-
Prigent, C.1
Dimitrov, S.2
-
54
-
-
0025045682
-
The major phosphorylation site of nucleophosmin (B23) is phosphorylated by a nuclear kinase II
-
PMID:2400401
-
Chan PK, Liu QR, Durban E. The major phosphorylation site of nucleophosmin (B23) is phosphorylated by a nuclear kinase II. Biochem J 1990; 270:549-52; PMID:2400401
-
(1990)
Biochem J
, vol.270
, pp. 549-552
-
-
Chan, P.K.1
Liu, Q.R.2
Durban, E.3
-
55
-
-
85037975938
-
Optics far beyond the diffraction limit
-
In: Traeger F, ed., Berlin,: Springer
-
Cremer C. Optics far beyond the diffraction limit. In: Traeger F, ed. Springer Handbook of Lasers and Optics, Berlin,: Springer, 2012:1359-97.
-
(2012)
Springer Handbook of Lasers and Optics
, pp. 1359-1397
-
-
Cremer, C.1
-
56
-
-
77954995399
-
A guide to super-resolution fluorescence microscopy
-
PMID:20643879
-
Schermelleh L, Heintzmann R, Leonhardt H. A guide to super-resolution fluorescence microscopy. J Cell Biol 2010; 190:165-75; PMID:20643879; http://dx.doi.org/10.1083/jcb.201002018
-
(2010)
J Cell Biol
, vol.190
, pp. 165-175
-
-
Schermelleh, L.1
Heintzmann, R.2
Leonhardt, H.3
-
57
-
-
84864680102
-
Formation of nuclear heterochromatin: The nucleolar point of view
-
PMID:22735386
-
Guetg C, Santoro R. Formation of nuclear heterochromatin: the nucleolar point of view. Epigenetics: Off J DNA Methylation Soc 2012; 7:811-4; PMID:22735386; http://dx.doi.org/10.4161/epi.21072
-
(2012)
Epigenetics: Off J DNA Methylation Soc
, vol.7
, pp. 811-814
-
-
Guetg, C.1
Santoro, R.2
-
58
-
-
77950375276
-
Initial genomics of the human nucleolus
-
PMID:20361057
-
Nemeth A, Conesa A, Santoyo-Lopez J, Medina I, Montaner D, Peterfia B, Solovei I, Cremer T, Dopazo J, Langst G. Initial genomics of the human nucleolus. PLoS Genet 2010; 6:e1000889; PMID:20361057; http://dx.doi.org/10.1371/journal.pgen.1000889
-
(2010)
Plos Genet
, vol.6
-
-
Nemeth, A.1
Conesa, A.2
Santoyo-Lopez, J.3
Medina, I.4
Montaner, D.5
Peterfia, B.6
Solovei, I.7
Cremer, T.8
Dopazo, J.9
Langst, G.10
-
59
-
-
30044435641
-
Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones
-
PMID:16215742
-
Zinner R, Albiez H, Walter J, Peters AH, Cremer T, Cremer M. Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones. Histochem Cell Biol 2006; 125:3-19; PMID:16215742; http://dx.doi.org/10.1007/s00418-005-0049-1
-
(2006)
Histochem Cell Biol
, vol.125
, pp. 3-19
-
-
Zinner, R.1
Albiez, H.2
Walter, J.3
Peters, A.H.4
Cremer, T.5
Cremer, M.6
-
60
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
PMID:18172162
-
Mitchell JA, Fraser P. Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev 2008; 22:20-5; PMID:18172162; http://dx.doi.org/10.1101/gad.454008
-
(2008)
Genes Dev
, vol.22
, pp. 20-25
-
-
Mitchell, J.A.1
Fraser, P.2
-
61
-
-
79955084061
-
Heterochromatin establishment in the context of genome-wide epigenetic reprogramming
-
PMID:21497937
-
Probst AV, Almouzni G. Heterochromatin establishment in the context of genome-wide epigenetic reprogramming. Trends Genet: TIG 2011; 27:177-85; PMID:21497937; http://dx.doi.org/10.1016/j. tig.2011.02.002
-
(2011)
Trends Genet: TIG
, vol.27
, pp. 177-185
-
-
Probst, A.V.1
Almouzni, G.2
-
62
-
-
0025883336
-
Immunoelectron microscopic localization of small nuclear ribonucleoproteins during bovine early embryogenesis
-
PMID:1834097
-
Kopecny V, Fakan S, Pavlok A, Pivko J, Grafenau P, Biggiogera M, Leser G, Martin TE. Immunoelectron microscopic localization of small nuclear ribonucleoproteins during bovine early embryogenesis. Mol Reprod Dev 1991; 29:209-19; PMID:1834097; http://dx.doi.org/10.1002/mrd.1080290302
-
(1991)
Mol Reprod Dev
, vol.29
, pp. 209-219
-
-
Kopecny, V.1
Fakan, S.2
Pavlok, A.3
Pivko, J.4
Grafenau, P.5
Biggiogera, M.6
Leser, G.7
Martin, T.E.8
-
63
-
-
84864297655
-
Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation
-
PMID:22795131
-
Chandra T, Kirschner K, Thuret JY, Pope BD, Ryba T, Newman S, Ahmed K, Samarajiwa SA, Salama R, Carroll T, et al. Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation. Mol Cell 2012; 47:203-14; PMID:22795131; http://dx.doi.org/10.1016/j.molcel.2012.06.010
-
(2012)
Mol Cell
, vol.47
, pp. 203-214
-
-
Chandra, T.1
Kirschner, K.2
Thuret, J.Y.3
Pope, B.D.4
Ryba, T.5
Newman, S.6
Ahmed, K.7
Samarajiwa, S.A.8
Salama, R.9
Carroll, T.10
-
64
-
-
77953231674
-
Remodeling of nuclear architecture by the thiodioxoxpiperazine metabolite chaetocin
-
PMID:20302859
-
Illner D, Zinner R, Handtke V, Rouquette J, Strickfaden H, Lanctot C, Conrad M, Seiler A, Imhof A, Cremer T, et al. Remodeling of nuclear architecture by the thiodioxoxpiperazine metabolite chaetocin. Exp Cell Res 2010; 316:1662-80; PMID:20302859; http://dx.doi.org/10.1016/j.yexcr.2010.03.008
-
(2010)
Exp Cell Res
, vol.316
, pp. 1662-1680
-
-
Illner, D.1
Zinner, R.2
Handtke, V.3
Rouquette, J.4
Strickfaden, H.5
Lanctot, C.6
Conrad, M.7
Seiler, A.8
Imhof, A.9
Cremer, T.10
-
65
-
-
0031829142
-
Onset of transcription in bovine oocytes and preimplantation embryos
-
PMID:9712315
-
Memili E, Dominko T, First NL. Onset of transcription in bovine oocytes and preimplantation embryos. Mol Reprod Dev 1998; 51:36-41; PMID:9712315; http://dx.doi.org/10.1002/(SICI)1098-2795(199809)51:1%3c36::AID-MRD4%3e3.0.CO;2-X
-
(1998)
Mol Reprod Dev
, vol.51
, pp. 36-41
-
-
Memili, E.1
Dominko, T.2
First, N.L.3
-
66
-
-
84889005653
-
Transcription factories: Genome organization and gene regulation
-
PMID:23597155
-
Papantonis A, Cook PR. Transcription factories: genome organization and gene regulation. Chem Rev 2013; 113:8683-705; PMID:23597155; http://dx.doi.org/10.1021/cr300513p
-
(2013)
Chem Rev
, vol.113
, pp. 8683-8705
-
-
Papantonis, A.1
Cook, P.R.2
-
67
-
-
84888991588
-
The RNA polymerase II carboxyterminal domain (CTD) code
-
PMID:23952966
-
Eick D, Geyer M. The RNA polymerase II carboxyterminal domain (CTD) code. Chem Rev 2013; 113:8456-90; PMID:23952966; http://dx.doi.org/10.1021/cr400071f
-
(2013)
Chem Rev
, vol.113
, pp. 8456-8490
-
-
Eick, D.1
Geyer, M.2
-
68
-
-
84872405841
-
Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription
-
PMID:22982363
-
Heidemann M, Hintermair C, Voss K, Eick D. Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription. Biochimica et Biophysica Acta 2013; 1829:55-62; PMID:22982363; http://dx.doi.org/10.1016/j.bbagrm.2012.08.013
-
(2013)
Biochimica Et Biophysica Acta
, vol.1829
, pp. 55-62
-
-
Heidemann, M.1
Hintermair, C.2
Voss, K.3
Eick, D.4
-
69
-
-
84882628481
-
The origin and impact of embryonic aneuploidy
-
PMID:23620267
-
Fragouli E, Alfarawati S, Spath K, Jaroudi S, Sarasa J, Enciso M, Wells D. The origin and impact of embryonic aneuploidy. Hum Genet 2013; 132:1001-13; PMID:23620267; http://dx.doi.org/10.1007/s00439-013-1309-0
-
(2013)
Hum Genet
, vol.132
, pp. 1001-1013
-
-
Fragouli, E.1
Alfarawati, S.2
Spath, K.3
Jaroudi, S.4
Sarasa, J.5
Enciso, M.6
Wells, D.7
-
70
-
-
84882314374
-
Effects of oocyte quality, incubation time and maturation environment on the number of chromosomal abnormalities in IVF-derived early bovine embryos
-
PMID:23182337
-
Demyda-Peyras S, Dorado J, Hidalgo M, Anter J, De Luca L, Genero E, Moreno-Millan M. Effects of oocyte quality, incubation time and maturation environment on the number of chromosomal abnormalities in IVF-derived early bovine embryos. Reprod Fertility Dev 2013; 25:1077-84; PMID:23182337; http://dx.doi.org/10.1071/RD12140
-
(2013)
Reprod Fertility Dev
, vol.25
, pp. 1077-1084
-
-
Demyda-Peyras, S.1
Dorado, J.2
Hidalgo, M.3
Anter, J.4
De Luca, L.5
Genero, E.6
Moreno-Millan, M.7
-
71
-
-
20244377029
-
A high proportion of bovine blastocysts produced in vitro are mixoploid
-
PMID:10330080
-
Viuff D, Rickords L, Offenberg H, Hyttel P, Avery B, Greve T, Olsaker I, Williams JL, Callesen H, Thomsen PD. A high proportion of bovine blastocysts produced in vitro are mixoploid. Biol Reprod 1999; 60:1273-8; PMID:10330080; http://dx.doi.org/10.1095/biolreprod60.6.1273
-
(1999)
Biol Reprod
, vol.60
, pp. 1273-1278
-
-
Viuff, D.1
Rickords, L.2
Offenberg, H.3
Hyttel, P.4
Avery, B.5
Greve, T.6
Olsaker, I.7
Williams, J.L.8
Callesen, H.9
Thomsen, P.D.10
-
72
-
-
79960651564
-
Cell arrest and cell death in mammalian preimplantation development: Lessons from the bovine model
-
PMID:21811561
-
Leidenfrost S, Boelhauve M, Reichenbach M, Gungor T, Reichenbach HD, Sinowatz F, Wolf E, Habermann FA. Cell arrest and cell death in mammalian preimplantation development: lessons from the bovine model. PloS One 2011; 6:e22121; PMID:21811561; http://dx.doi.org/10.1371/journal.pone.0022121
-
(2011)
Plos One
, vol.6
-
-
Leidenfrost, S.1
Boelhauve, M.2
Reichenbach, M.3
Gungor, T.4
Reichenbach, H.D.5
Sinowatz, F.6
Wolf, E.7
Habermann, F.A.8
-
74
-
-
64249139170
-
Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution
-
PMID:19379699
-
Solovei I, Kreysing M, Lanctot C, Kosem S, Peichl L, Cremer T, Guck J, Joffe B. Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution. Cell 2009; 137:356-68; PMID:19379699; http://dx.doi.org/10.1016/j.cell.2009.01.052
-
(2009)
Cell
, vol.137
, pp. 356-368
-
-
Solovei, I.1
Kreysing, M.2
Lanctot, C.3
Kosem, S.4
Peichl, L.5
Cremer, T.6
Guck, J.7
Joffe, B.8
-
75
-
-
33646021963
-
Long-range directional movement of an interphase chromosome site
-
PMID:16631592
-
Chuang CH, Carpenter AE, Fuchsova B, Johnson T, de Lanerolle P, Belmont AS. Long-range directional movement of an interphase chromosome site. Curr Biol 2006; 16:825-31; PMID:16631592; http://dx.doi.org/10.1016/j.cub.2006.03.059
-
(2006)
Curr Biol
, vol.16
, pp. 825-831
-
-
Chuang, C.H.1
Carpenter, A.E.2
Fuchsova, B.3
Johnson, T.4
De Lanerolle, P.5
Belmont, A.S.6
-
76
-
-
34548210885
-
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
-
PMID:17622196
-
Osborne CS, Chakalova L, Mitchell JA, Horton A, Wood AL, Bolland DJ, Corcoran AE, Fraser P. Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. PLoS Biol 2007; 5:e192; PMID:17622196; http://dx.doi.org/10.1371/journal. pbio.0050192
-
(2007)
Plos Biol
, vol.5
-
-
Osborne, C.S.1
Chakalova, L.2
Mitchell, J.A.3
Horton, A.4
Wood, A.L.5
Bolland, D.J.6
Corcoran, A.E.7
Fraser, P.8
-
77
-
-
84881255212
-
Spatial dynamics of chromosome translocations in living cells
-
PMID:23929981
-
Roukos V, Voss TC, Schmidt CK, Lee S, Wangsa D, Misteli T. Spatial dynamics of chromosome translocations in living cells. Science 2013; 341:660-4; PMID:23929981; http://dx.doi.org/10.1126/science.1237150
-
(2013)
Science
, vol.341
, pp. 660-664
-
-
Roukos, V.1
Voss, T.C.2
Schmidt, C.K.3
Lee, S.4
Wangsa, D.5
Misteli, T.6
-
78
-
-
84934434510
-
The non-random repositioning of whole chromosomes and individual gene loci in interphase nuclei and its relevance in disease, infection, aging, and aancer
-
In: Schirmer EC, de las Heras JI, eds., New York: Springer
-
Bridger JM, Arican-Gotkas H, Foster H, Godwin L, Harvey A, Kill IR, Knight M, Mehta IS, Ahmed M. The non-random repositioning of whole chromosomes and individual gene loci in interphase nuclei and its relevance in disease, infection, aging, and aancer. In: Schirmer EC, de las Heras JI, eds. Cancer Biology and the Nuclear Envelope, New York: Springer, 2014, 263-79.
-
(2014)
Cancer Biology and the Nuclear Envelope
, pp. 263-279
-
-
Bridger, J.M.1
Arican-Gotkas, H.2
Foster, H.3
Godwin, L.4
Harvey, A.5
Kill, I.R.6
Knight, M.7
Mehta, I.S.8
Ahmed, M.9
-
79
-
-
80051590194
-
Farnesyltransferase inhibitor treatment restores chromosome territory positions and active chromosome dynamics in Hutchinson-Gilford progeria syndrome cells
-
PMID:21838864
-
Mehta IS, Eskiw CH, Arican HD, Kill IR, Bridger JM. Farnesyltransferase inhibitor treatment restores chromosome territory positions and active chromosome dynamics in Hutchinson-Gilford progeria syndrome cells. Genome Biol 2011; 12:R74; PMID:21838864; http://dx.doi.org/10.1186/gb-2011-12-8-r74
-
(2011)
Genome Biol
, vol.12
, pp. R74
-
-
Mehta, I.S.1
Eskiw, C.H.2
Arican, H.D.3
Kill, I.R.4
Bridger, J.M.5
-
80
-
-
77954457403
-
4D chromatin dynamics in cycling cells: Theodor boveri’s hypotheses revisited
-
PMID:21327076
-
Strickfaden H, Zunhammer A, van Koningsbruggen S, Kohler D, Cremer T. 4D chromatin dynamics in cycling cells: theodor boveri’s hypotheses revisited. Nucleus 2010; 1:284-97; PMID:21327076; http://dx.doi.org/10.4161/nucl.1.3.11969
-
(2010)
Nucleus
, vol.1
, pp. 284-297
-
-
Strickfaden, H.1
Zunhammer, A.2
Van Koningsbruggen, S.3
Kohler, D.4
Cremer, T.5
-
81
-
-
0037416135
-
Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages
-
PMID:12604593
-
Walter J, Schermelleh L, Cremer M, Tashiro S, Cremer T. Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages. J Cell Biol 2003; 160:685-97; PMID:12604593; http://dx.doi.org/10.1083/jcb.200211103
-
(2003)
J Cell Biol
, vol.160
, pp. 685-697
-
-
Walter, J.1
Schermelleh, L.2
Cremer, M.3
Tashiro, S.4
Cremer, T.5
-
82
-
-
84871693479
-
Local nucleosome dynamics facilitate chromatin accessibility in living mammalian cells
-
PMID:23246002
-
Hihara S, Pack CG, Kaizu K, Tani T, Hanafusa T, Nozaki T, Takemoto S, Yoshimi T, Yokota H, Imamoto N, et al. Local nucleosome dynamics facilitate chromatin accessibility in living mammalian cells. Cell Rep 2012; 2:1645-56; PMID:23246002; http://dx.doi.org/10.1016/j.celrep.2012.11.008
-
(2012)
Cell Rep
, vol.2
, pp. 1645-1656
-
-
Hihara, S.1
Pack, C.G.2
Kaizu, K.3
Tani, T.4
Hanafusa, T.5
Nozaki, T.6
Takemoto, S.7
Yoshimi, T.8
Yokota, H.9
Imamoto, N.10
-
83
-
-
0032750068
-
Quantitative motion analysis of subchromosomal foci in living cells using four-dimensional microscopy
-
PMID:10545385
-
Bornfleth H, Edelmann P, Zink D, Cremer T, Cremer C. Quantitative motion analysis of subchromosomal foci in living cells using four-dimensional microscopy. Biophys J 1999; 77:2871-86; PMID:10545385; http://dx.doi.org/10.1016/S0006-3495(99)77119-5
-
(1999)
Biophys J
, vol.77
, pp. 2871-2886
-
-
Bornfleth, H.1
Edelmann, P.2
Zink, D.3
Cremer, T.4
Cremer, C.5
-
84
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
PMID:22495300
-
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012; 485:376-80; PMID:22495300; http://dx.doi.org/10.1038/nature11082
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
85
-
-
84865987955
-
The genome: An isochore ensemble and its evolution
-
PMID:22954213
-
Bernardi G. The genome: an isochore ensemble and its evolution. Ann N Y Acad Sci 2012; 1267:31-4; PMID:22954213; http://dx.doi.org/10.1111/j.1749-6632.2012.06591.x
-
(2012)
Ann N Y Acad Sci
, vol.1267
, pp. 31-34
-
-
Bernardi, G.1
-
86
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
PMID:19815776
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009; 326:289-93; PMID:19815776; http://dx.doi.org/10.1126/science.1181369
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
87
-
-
77951183112
-
Measurement of replication structures at the nanometer scale using super-resolution light microscopy
-
PMID:19864256
-
Baddeley D, Chagin VO, Schermelleh L, Martin S, Pombo A, Carlton PM, Gahl A, Domaing P, Birk U, Leonhardt H, et al. Measurement of replication structures at the nanometer scale using super-resolution light microscopy. Nucleic Acids Res 2010; 38:e8; PMID:19864256; http://dx.doi.org/10.1093/nar/gkp901
-
(2010)
Nucleic Acids Res
, vol.38
, pp. e8
-
-
Baddeley, D.1
Chagin, V.O.2
Schermelleh, L.3
Martin, S.4
Pombo, A.5
Carlton, P.M.6
Gahl, A.7
Domaing, P.8
Birk, U.9
Leonhardt, H.10
-
88
-
-
33751258576
-
Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks
-
PMID:17115328
-
Albiez H, Cremer M, Tiberi C, Vecchio L, Schermelleh L, Dittrich S, Kupper K, Joffe B, Thormeyer T, von Hase J, et al. Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks. Chromosome Res: Int J Mol Supramol Evol Aspects Chromosome Biol 2006; 14:707-33; PMID:17115328; http://dx.doi.org/10.1007/s10577-006-1086-x
-
(2006)
Chromosome Res: Int J Mol Supramol Evol Aspects Chromosome Biol
, vol.14
, pp. 707-733
-
-
Albiez, H.1
Cremer, M.2
Tiberi, C.3
Vecchio, L.4
Schermelleh, L.5
Dittrich, S.6
Kupper, K.7
Joffe, B.8
Thormeyer, T.9
Von Hase, J.10
-
89
-
-
84866165052
-
Chromosomes without a 30-nm chromatin fiber
-
PMID:22825571
-
Joti Y, Hikima T, Nishino Y, Kamada F, Hihara S, Takata H, Ishikawa T, Maeshima K. Chromosomes without a 30-nm chromatin fiber. Nucleus 2012; 3:404-10; PMID:22825571; http://dx.doi.org/10.4161/nucl.21222
-
(2012)
Nucleus
, vol.3
, pp. 404-410
-
-
Joti, Y.1
Hikima, T.2
Nishino, Y.3
Kamada, F.4
Hihara, S.5
Takata, H.6
Ishikawa, T.7
Maeshima, K.8
-
90
-
-
58149401194
-
Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
-
PMID:19064912
-
Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, Dubochet J. Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc Nat Acad Sci U S A 2008; 105:19732-7; PMID:19064912; http://dx.doi.org/10.1073/pnas.0810057105
-
(2008)
Proc Nat Acad Sci U S A
, vol.105
, pp. 19732-19737
-
-
Eltsov, M.1
Maclellan, K.M.2
Maeshima, K.3
Frangakis, A.S.4
Dubochet, J.5
-
91
-
-
0033593366
-
Compartmentalization of interphase chromosomes observed in simulation and experiment
-
PMID:9887267
-
Munkel C, Eils R, Dietzel S, Zink D, Mehring C, Wedemann G, Cremer T, Langowski J. Compartmentalization of interphase chromosomes observed in simulation and experiment. J Mol Biol 1999; 285:1053-65; PMID:9887267; http://dx.doi.org/10.1006/jmbi.1998.2361
-
(1999)
J Mol Biol
, vol.285
, pp. 1053-1065
-
-
Munkel, C.1
Eils, R.2
Dietzel, S.3
Zink, D.4
Mehring, C.5
Wedemann, G.6
Cremer, T.7
Langowski, J.8
-
92
-
-
2142772663
-
Radial arrangement of chromosome territories in human cell nuclei: A computer model approach based on gene density indicates a probabilistic global positioning code
-
PMID:15111398
-
Kreth G, Finsterle J, von Hase J, Cremer M, Cremer C. Radial arrangement of chromosome territories in human cell nuclei: a computer model approach based on gene density indicates a probabilistic global positioning code. Biophys J 2004; 86:2803-12; PMID:15111398; http://dx.doi.org/10.1016/S0006-3495(04)74333-7
-
(2004)
Biophys J
, vol.86
, pp. 2803-2812
-
-
Kreth, G.1
Finsterle, J.2
Von Hase, J.3
Cremer, M.4
Cremer, C.5
-
93
-
-
11144321432
-
Organization of chromatin in the interphase mammalian cell
-
PMID:15629642
-
Dehghani H, Dellaire G, Bazett-Jones DP. Organization of chromatin in the interphase mammalian cell. Micron 2005; 36:95-108; PMID:15629642; http://dx.doi.org/10.1016/j.micron.2004.10.003
-
(2005)
Micron
, vol.36
, pp. 95-108
-
-
Dehghani, H.1
Dellaire, G.2
Bazett-Jones, D.P.3
-
94
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
PMID:16623600
-
Branco MR, Pombo A. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 2006; 4:e138; PMID:16623600; http://dx.doi.org/10.1371/journal.pbio.0040138
-
(2006)
Plos Biol
, vol.4
-
-
Branco, M.R.1
Pombo, A.2
-
95
-
-
79952279926
-
The fractal globule as a model of chromatin architecture in the cell
-
PMID:21274616
-
Mirny LA. The fractal globule as a model of chromatin architecture in the cell. Chromosome Res: Int J Mol Supramol Evol Aspects Chromosome Biol 2011; 19:37-51; PMID:21274616; http://dx.doi.org/10.1007/s10577-010-9177-0
-
(2011)
Chromosome Res: Int J Mol Supramol Evol Aspects Chromosome Biol
, vol.19
, pp. 37-51
-
-
Mirny, L.A.1
-
96
-
-
84893398836
-
From a melt of rings to chromosome territories: The role of topological constraints in genome folding
-
PMID:24472896
-
Halverson JD, Smrek J, Kremer K, Grosberg AY. From a melt of rings to chromosome territories: the role of topological constraints in genome folding. Rep Prog Phys Phys Soc 2014; 77:022601; PMID:24472896; http://dx.doi.org/10.1088/0034-4885/77/2/022601
-
(2014)
Rep Prog Phys Phys Soc
, vol.77
-
-
Halverson, J.D.1
Smrek, J.2
Kremer, K.3
Grosberg, A.Y.4
-
97
-
-
84891122605
-
How chromatin looping and nuclear envelope attachment affect genome organization in eukaryotic cell nuclei
-
PMID:24380599
-
Jerabek H, Heermann D. How chromatin looping and nuclear envelope attachment affect genome organization in eukaryotic cell nuclei. Int Rev Cell Mol Biol 2014; 307:351-81; PMID:24380599; http://dx.doi.org/10.1016/B978-0-12-800046-5.00010-2
-
(2014)
Int Rev Cell Mol Biol
, vol.307
, pp. 351-381
-
-
Jerabek, H.1
Heermann, D.2
-
98
-
-
84904172931
-
Chromatin as dynamic 10-nm fibers
-
PMID:24737122
-
Maeshima K, Imai R, Tamura S, Nozaki T. Chromatin as dynamic 10-nm fibers. Chromosoma 2014; 123:225-37; PMID:24737122; http://dx.doi.org/10.1007/s00412-014-0460-2
-
(2014)
Chromosoma
, vol.123
, pp. 225-237
-
-
Maeshima, K.1
Imai, R.2
Tamura, S.3
Nozaki, T.4
-
99
-
-
84981488759
-
A polymer model explains the complexity of large-scale chromatin folding
-
PMID:23823730
-
Barbieri M, Fraser J, Lavitas LM, Chotalia M, Dostie J, Pombo A, Nicodemi M. A polymer model explains the complexity of large-scale chromatin folding. Nucleus 2013; 4:267-73; PMID:23823730; http://dx.doi.org/10.4161/nucl.25432
-
(2013)
Nucleus
, vol.4
, pp. 267-273
-
-
Barbieri, M.1
Fraser, J.2
Lavitas, L.M.3
Chotalia, M.4
Dostie, J.5
Pombo, A.6
Nicodemi, M.7
-
100
-
-
84891118506
-
Chapter one-the nuclear physique
-
Pederson T. Chapter one-the nuclear physique. Int Rev Cell Mol Biol. 2014; 307:1-13. doi: 10.1016/B978-0-12-800046-5.00001-1
-
(2014)
Int Rev Cell Mol Biol
, vol.307
, pp. 1-13
-
-
Pederson, T.1
-
101
-
-
84906085756
-
Preface. New models of the cell nucleus: Crowding, entropic forces, phase separation, and fractals
-
PMID:24380603
-
Hancock R, Jeon KW. Preface. New models of the cell nucleus: crowding, entropic forces, phase separation, and fractals. Int Rev Cell Mol Biol 2014; 307:13; PMID:24380603
-
(2014)
Int Rev Cell Mol Biol
, vol.307
, pp. 13
-
-
Hancock, R.1
Jeon, K.W.2
-
102
-
-
84903373858
-
Geometry of the nucleus: A perspective on gene expression regulation
-
PMID:24981829
-
Woringer M, Darzacq X, Izeddin I. Geometry of the nucleus: a perspective on gene expression regulation. Curr Opin Chem Biol 2014; 20C:112-9; PMID:24981829; http://dx.doi.org/10.1016/j.cbpa.2014.05.009
-
(2014)
Curr Opin Chem Biol
, vol.20
, pp. 112-119
-
-
Woringer, M.1
Darzacq, X.2
Izeddin, I.3
-
103
-
-
84878060807
-
Resolution enhancement techniques in microscopy
-
Cremer C, Masters BR. Resolution enhancement techniques in microscopy. EPJ H 2013; 38:281-344; http://dx.doi.org/10.1140/epjh/e2012-20060-1
-
(2013)
EPJ H
, vol.38
, pp. 281-344
-
-
Cremer, C.1
Masters, B.R.2
-
104
-
-
84883053039
-
Fluorescence microscopy-a historical and technical perspective
-
PMID:23585290
-
Renz M. Fluorescence microscopy-a historical and technical perspective. Cytometry A 2013; 83:767-79; PMID:23585290; http://dx.doi.org/10.1002/cyto.a.22295
-
(2013)
Cytometry A
, vol.83
, pp. 767-779
-
-
Renz, M.1
-
105
-
-
84894063115
-
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
-
PMID:24360272
-
Chen B, Gilbert LA, Cimini BA, Schnitzbauer J, Zhang W, Li GW, Park J, Blackburn EH, Weissman JS, Qi LS, et al. Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell 2013; 155:1479-91; PMID:24360272; http://dx.doi.org/10.1016/j.cell.2013.12.001
-
(2013)
Cell
, vol.155
, pp. 1479-1491
-
-
Chen, B.1
Gilbert, L.A.2
Cimini, B.A.3
Schnitzbauer, J.4
Zhang, W.5
Li, G.W.6
Park, J.7
Blackburn, E.H.8
Weissman, J.S.9
Qi, L.S.10
-
106
-
-
84891363606
-
Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors
-
PMID:24324157
-
Ma H, Reyes-Gutierrez P, Pederson T. Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors. Proc Nat Acad Sci U S A 2013; 110:21048-53; PMID:24324157; http://dx.doi.org/10.1073/pnas.1319097110
-
(2013)
Proc Nat Acad Sci U S A
, vol.110
, pp. 21048-21053
-
-
Ma, H.1
Reyes-Gutierrez, P.2
Pederson, T.3
-
107
-
-
84904015641
-
Single molecule localization microscopy of the distribution of chromatin using Hoechst and DAPI fluorescent probes
-
PMID:24945151
-
Szczurek AT, Prakash K, Lee HK, Zurek-Biesiada DJ, Best G, Hagmann M, Dobrucki JW, Cremer C, Birk U. Single molecule localization microscopy of the distribution of chromatin using Hoechst and DAPI fluorescent probes. Nucleus 2014; 5:331-340; PMID:24945151; http://dx.doi.org/10.4161/nucl.29564
-
(2014)
Nucleus
, vol.5
, pp. 331-340
-
-
Szczurek, A.T.1
Prakash, K.2
Lee, H.K.3
Zurek-Biesiada, D.J.4
Best, G.5
Hagmann, M.6
Dobrucki, J.W.7
Cremer, C.8
Birk, U.9
-
108
-
-
84896393806
-
Single-molecule super-resolution light-sheet microscopy. Chemphyschem
-
PMID:24615819
-
Hu YS, Zimmerley M, Li Y, Watters R, Cang H. Single-molecule super-resolution light-sheet microscopy. Chemphyschem: Eur J Chem Phys Phys Chem 2014; 15:577-86; PMID:24615819; http://dx.doi.org/10.1002/cphc.201300732
-
(2014)
Eur J Chem Phys Phys Chem
, vol.15
, pp. 577-586
-
-
Hu, Y.S.1
Zimmerley, M.2
Li, Y.3
Watters, R.4
Cang, H.5
-
109
-
-
84870498171
-
Correlative fluorescence and EFTEM imaging of the organized components of the mammalian nucleus
-
PMID:23086887
-
Kruhlak MJ. Correlative fluorescence and EFTEM imaging of the organized components of the mammalian nucleus. Methods Mol Biol 2013; 950:397-416; PMID:23086887
-
(2013)
Methods Mol Biol
, vol.950
, pp. 397-416
-
-
Kruhlak, M.J.1
-
110
-
-
84885617426
-
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
-
PMID:24067610
-
Nagano T, Lubling Y, Stevens TJ, Schoenfelder S, Yaffe E, Dean W, Laue ED, Tanay A, Fraser P. Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. Nature 2013; 502:59-64; PMID:24067610; http://dx.doi.org/10.1038/nature12593
-
(2013)
Nature
, vol.502
, pp. 59-64
-
-
Nagano, T.1
Lubling, Y.2
Stevens, T.J.3
Schoenfelder, S.4
Yaffe, E.5
Dean, W.6
Laue, E.D.7
Tanay, A.8
Fraser, P.9
-
111
-
-
9744256229
-
Isolation of nascent messenger RNA from mouse preimplantation embryos
-
PMID:15286032
-
Kageyama S, Nagata M, Aoki F. Isolation of nascent messenger RNA from mouse preimplantation embryos. Biol Reprod 2004; 71:1948-55; PMID:15286032; http://dx.doi.org/10.1095/biolreprod.104.031906
-
(2004)
Biol Reprod
, vol.71
, pp. 1948-1955
-
-
Kageyama, S.1
Nagata, M.2
Aoki, F.3
-
112
-
-
0035163212
-
Electric field-mediated BrUTP uptake by mouse oocytes, eggs, and embryos
-
PMID:11139229
-
Waksmundzka M, Debey P. Electric field-mediated BrUTP uptake by mouse oocytes, eggs, and embryos. Mol Reprod Dev 2001; 58:173-9; PMID:11139229; http://dx.doi.org/10.1002/1098-2795(200102)58:2%3c173::AID-MRD6%3e3.0.CO;2-2
-
(2001)
Mol Reprod Dev
, vol.58
, pp. 173-179
-
-
Waksmundzka, M.1
Debey, P.2
|