메뉴 건너뛰기




Volumn 5, Issue 4, 2014, Pages 331-340

Single molecule localization microscopy of the distribution of chromatin using hoechst and DAPI fluorescent probes

Author keywords

Blinking; Chromatin; DAPI; DNA; dSTORM; Fluorescence microscopy; Hoechst; Localization microscopy; Nucleus; Photoconversion; SMLM; SPDM; Super resolution microscopy

Indexed keywords

4 [5 (4 METHYL 1 PIPERAZINYL) [2, 5' BI 1H BENZIMIDAZOL] 2' YL] PHENOL; 4', 6 DIAMIDINO 2 PHENYLINDOLE; BISBENZIMIDE; FLUORESCENT DYE; GREEN FLUORESCENT PROTEIN; HOE 33342; UNCLASSIFIED DRUG; CHROMATIN;

EID: 84904015641     PISSN: 19491034     EISSN: 19491042     Source Type: Journal    
DOI: 10.4161/nucl.29564     Document Type: Article
Times cited : (67)

References (42)
  • 1
    • 80052409661 scopus 로고    scopus 로고
    • Functional nuclear organization of transcription and DNA replication: A topographical marriage between chromatin domains and the interchromatin compartment
    • PMID:21467142;
    • Markaki Y, Gunkel M, Schermelleh L, Beichmanis S, Neumann J, Heidemann M, Leonhardt H, Eick D, Cremer C, Cremer T. Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. Cold Spring Harb Symp Quant Biol 2010; 75:475-92; PMID:21467142; http://dx.doi.org/10.1101/sqb.2010.75.042
    • (2010) Cold Spring Harb Symp Quant Biol , vol.75 , pp. 475-492
    • Markaki, Y.1    Gunkel, M.2    Schermelleh, L.3    Beichmanis, S.4    Neumann, J.5    Heidemann, M.6    Leonhardt, H.7    Eick, D.8    Cremer, C.9    Cremer, T.10
  • 2
    • 77958569747 scopus 로고    scopus 로고
    • Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP-histones
    • PMID:20856676;
    • Matsuda A, Shao L, Boulanger J, Kervrann C, Carlton PM, Kner P, Agard D, Sedat JW. Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP-histones. PLoS One 2010; 5:e12768; PMID:20856676; http://dx.doi.org/10.1371/journal.pone.0012768
    • (2010) PLoS One , vol.5
    • Matsuda, A.1    Shao, L.2    Boulanger, J.3    Kervrann, C.4    Carlton, P.M.5    Kner, P.6    Agard, D.7    Sedat, J.W.8
  • 4
    • 79952207463 scopus 로고    scopus 로고
    • DNA and chromatin imaging with super-resolution fluorescence microscopy based on single-molecule localization
    • PMID: 21184489
    • Flors C. DNA and chromatin imaging with super-resolution fluorescence microscopy based on single-molecule localization. Biopolymers 2011; 95:290-7; PMID: 21184489; http://dx.doi.org/10.1002/bip.21574
    • (2011) Biopolymers , vol.95 , pp. 290-297
    • Flors, C.1
  • 5
    • 80052803313 scopus 로고    scopus 로고
    • Binding-activated localization microscopy of DNA structures
    • PMID:21838238;
    • Schoen I, Ries J, Klotzsch E, Ewers H, Vogel V. Binding-activated localization microscopy of DNA structures. Nano Lett 2011; 11:4008-11; PMID:21838238; http://dx.doi.org/10.1021/nl2025954
    • (2011) Nano Lett , vol.11 , pp. 4008-4011
    • Schoen, I.1    Ries, J.2    Klotzsch, E.3    Ewers, H.4    Vogel, V.5
  • 6
    • 80755189345 scopus 로고    scopus 로고
    • Single-molecule-based super-resolution images in the presence of multiple fluorophores
    • PMID:22003850;
    • Simonson PD, Rothenberg E, Selvin PR. Single-molecule-based super-resolution images in the presence of multiple fluorophores. Nano Lett 2011; 11:5090-6; PMID:22003850; http://dx.doi.org/10.1021/nl203560r
    • (2011) Nano Lett , vol.11 , pp. 5090-5096
    • Simonson, P.D.1    Rothenberg, E.2    Selvin, P.R.3
  • 7
    • 84857032212 scopus 로고    scopus 로고
    • Super-resolution fluorescence imaging of chromosomal DNA
    • PMID:22226957;
    • Zessin PJM, Finan K, Heilemann M. Super-resolution fluorescence imaging of chromosomal DNA. J Struct Biol 2012; 177:344-8; PMID:22226957; http://dx.doi.org/10.1016/j.jsb.2011.12.015
    • (2012) J Struct Biol , vol.177 , pp. 344-348
    • Zessin, P.J.M.1    Finan, K.2    Heilemann, M.3
  • 8
    • 84886439987 scopus 로고    scopus 로고
    • DNA damage signaling, impairment of cell cycle progression, and apoptosis triggered by 5-ethynyl-2′-deoxyuridine incorporated into DNA
    • PMID: 24115313
    • Zhao H, Halicka HD, Li J, Biela E, Berniak K, Dobrucki J, Darzynkiewicz Z. DNA damage signaling, impairment of cell cycle progression, and apoptosis triggered by 5-ethynyl-2′-deoxyuridine incorporated into DNA. Cytometry A 2013; 83:979-88; PMID: 24115313; http://dx.doi.org/10.1002/cyto.a.22396
    • (2013) Cytometry A , vol.83 , pp. 979-988
    • Zhao, H.1    Halicka, H.D.2    Li, J.3    Biela, E.4    Berniak, K.5    Dobrucki, J.6    Darzynkiewicz, Z.7
  • 9
    • 77954457057 scopus 로고    scopus 로고
    • Functional nuclear architecture studied by microscopy: Present and future
    • PMID:20630466;
    • Rouquette J, Cremer C, Cremer T, Fakan S. Functional nuclear architecture studied by microscopy: present and future. Int Rev Cell Mol Biol 2010; 282:1-90; PMID:20630466; http://dx.doi.org/10.1016/S1937-6448(10)82001-5
    • (2010) Int Rev Cell Mol Biol , vol.282 , pp. 1-90
    • Rouquette, J.1    Cremer, C.2    Cremer, T.3    Fakan, S.4
  • 10
    • 84857994566 scopus 로고    scopus 로고
    • Photoconversion of DAPI following UV or violet excitation can cause DAPI to fluoresce with blue or cyan excitation
    • PMID:22288651;
    • Piterburg M, Panet H, Weiss A. Photoconversion of DAPI following UV or violet excitation can cause DAPI to fluoresce with blue or cyan excitation. J Microsc 2012; 246:89-95; PMID:22288651; http://dx.doi.org/10.1111/j.1365-2818.2011.03591.x
    • (2012) J Microsc , vol.246 , pp. 89-95
    • Piterburg, M.1    Panet, H.2    Weiss, A.3
  • 11
    • 84876814233 scopus 로고    scopus 로고
    • UV-activated conversion of Hoechst 33258, DAPI, and Vybrant DyeCycle fluorescent dyes into blue-excited, green-emitting protonated forms
    • PMID:23418106;
    • Zurek-Biesiada D, Kedracka-Krok S, Dobrucki JW. UV-activated conversion of Hoechst 33258, DAPI, and Vybrant DyeCycle fluorescent dyes into blue-excited, green-emitting protonated forms. Cytometry A 2013; 83:441-51; PMID:23418106; http://dx.doi.org/10.1002/cyto.a.22260
    • (2013) Cytometry A , vol.83 , pp. 441-451
    • Zurek-Biesiada, D.1    Kedracka-Krok, S.2    Dobrucki, J.W.3
  • 13
    • 43149096709 scopus 로고    scopus 로고
    • High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy
    • PMID:18461478
    • Reymann J, Baddeley D, Gunkel M, Lemmer P, Stadter W, Jegou T, Rippe K, Cremer C, Birk U. High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy. Chromosome Res 2008; 16:367-82; PMID:18461478; http://dx.doi.org/10.1007/s10577-008-1238-2
    • (2008) Chromosome Res , vol.16 , pp. 367-382
    • Reymann, J.1    Baddeley, D.2    Gunkel, M.3    Lemmer, P.4    Stadter, W.5    Jegou, T.6    Rippe, K.7    Cremer, C.8    Birk, U.9
  • 14
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • PMID:16896339;
    • Rust MJ, Bates M, Zhuang X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 2006; 3:793-5; PMID:16896339; http://dx.doi.org/10.1038/nmeth929
    • (2006) Nat Methods , vol.3 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 16
    • 0022622499 scopus 로고
    • Assembly of chromatin fibers into metaphase chromosomes analyzed by transmission electron microscopy and scanning electron microscopy
    • PMID:3955172
    • Adolph KW, Kreisman LR, Kuehn RL. Assembly of chromatin fibers into metaphase chromosomes analyzed by transmission electron microscopy and scanning electron microscopy. Biophys J 1986; 49:221-31; PMID:3955172; http://dx.doi.org/10.1016/S0006-3495(86)83636-0
    • (1986) Biophys J , vol.49 , pp. 221-231
    • Adolph, K.W.1    Kreisman, L.R.2    Kuehn, R.L.3
  • 17
    • 0021962344 scopus 로고
    • Investigation of human chromosome polymorphisms by scanning electron microscopy
    • PMID:4039005;
    • Harrison CJ, Jack EM, Allen TD, Harris R. Investigation of human chromosome polymorphisms by scanning electron microscopy. J Med Genet 1985; 22:16-23; PMID:4039005; http://dx.doi.org/10.1136/jmg.22.1.16
    • (1985) J Med Genet , vol.22 , pp. 16-23
    • Harrison, C.J.1    Jack, E.M.2    Allen, T.D.3    Harris, R.4
  • 18
    • 0346556139 scopus 로고    scopus 로고
    • Labelling quality and chromosome morphology after low temperature FISH analysed by scanning far-field and near-field optical microscopy
    • PMID:12535181
    • Winkler R, Perner B, Rapp A, Durm M, Cremer C, Greulich K-O, Hausmann M. Labelling quality and chromosome morphology after low temperature FISH analysed by scanning far-field and near-field optical microscopy. J Microsc 2003; 209:23-33; PMID:12535181; http://dx.doi.org/10.1046/j.1365-2818.2003.01101.x
    • (2003) J Microsc , vol.209 , pp. 23-33
    • Winkler, R.1    Perner, B.2    Rapp, A.3    Durm, M.4    Cremer, C.5    Greulich, K.-O.6    Hausmann, M.7
  • 19
    • 79952807125 scopus 로고    scopus 로고
    • Chromatin folding--from biology to polymer models and back
    • PMID:21378305;
    • Tark-Dame M, van Driel R, Heermann DW. Chromatin folding--from biology to polymer models and back. J Cell Sci 2011; 124:839-45; PMID:21378305; http://dx.doi.org/10.1242/jcs.077628
    • (2011) J Cell Sci , vol.124 , pp. 839-845
    • Tark-Dame, M.1    van Driel, R.2    Heermann, D.W.3
  • 20
    • 0036231415 scopus 로고    scopus 로고
    • Precise nanometer localization analysis for individual fluorescent probes
    • 82:2775-83; PMID: 11964263
    • Thompson RE, Larson DR, Webb WW. Precise nanometer localization analysis for individual fluorescent probes. Biophys J 2002; 82:2775-83; PMID: 11964263; http://dx.doi.org/10.1016/S0006-3495(02)75618-X
    • (2002) Biophys J
    • Thompson, R.E.1    Larson, D.R.2    Webb, W.W.3
  • 22
    • 43149111319 scopus 로고    scopus 로고
    • Elucidating chromatin and nuclear domain architecture with electron spectroscopic imaging
    • PMID:18461480
    • Bazett-Jones DP, Li R, Fussner E, Nisman R, Dehghani H. Elucidating chromatin and nuclear domain architecture with electron spectroscopic imaging. Chromosome Res 2008; 16:397-412; PMID:18461480; http://dx.doi.org/10.1007/s10577-008-1237-3
    • (2008) Chromosome Res , vol.16 , pp. 397-412
    • Bazett-Jones, D.P.1    Li, R.2    Fussner, E.3    Nisman, R.4    Dehghani, H.5
  • 23
    • 84878060807 scopus 로고    scopus 로고
    • Resolution enhancement techniques in microscopy
    • Cremer C, Masters BR. Resolution enhancement techniques in microscopy. Eur Phys J H 2013; 38:281-344; http://dx.doi.org/10.1140/epjh/e2012-20060-1
    • (2013) Eur Phys J H , vol.38 , pp. 281-344
    • Cremer, C.1    Masters, B.R.2
  • 24
    • 44949098358 scopus 로고    scopus 로고
    • Interaction of a DNA intercalator DRAQ5, and a minor groove binder SYTO17, with chromatin in live cells--influence on chromatin organization and histone-DNA interactions
    • PMID: 18459157
    • Wojcik K, Dobrucki JW. Interaction of a DNA intercalator DRAQ5, and a minor groove binder SYTO17, with chromatin in live cells--influence on chromatin organization and histone-DNA interactions. Cytometry A 2008; 73:555-62; PMID: 18459157; http://dx.doi.org/10.1002/cyto.a.20573
    • (2008) Cytometry A , vol.73 , pp. 555-562
    • Wojcik, K.1    Dobrucki, J.W.2
  • 27
    • 84884896627 scopus 로고    scopus 로고
    • Single molecule localization microscopy for superresolution
    • Allen JR, Ross ST, Davidson M W. Single molecule localization microscopy for superresolution. J Opt 2013; 15:094001; http://dx.doi.org/10.1088/2040-8978/15/9/094001
    • (2013) J Opt , vol.15 , pp. 094001
    • Allen, J.R.1    Ross, S.T.2    Davidson, M.W.3
  • 28
    • 7244245762 scopus 로고    scopus 로고
    • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome
    • PMID:15496913
    • Hattori M; International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 2004; 4 31:931-45; PMID:15496913; http://dx.doi.org/10.1038/nature03001
    • (2004) Nature , vol.4 , Issue.31 , pp. 931-945
    • Hattori, M.1
  • 29
    • 0025006448 scopus 로고
    • Binding characteristics of Hoechst 33258 with calf thymus DNA, poly[d(A-T)], and d(CCGGAATTCCGG): Multiple stoichiometries and determination of tight binding with a wide spectrum of site affinities
    • PMID:1702995
    • Loontiens FG, Regenfuss P, Zechel A, Dumortier L, Clegg RM. Binding characteristics of Hoechst 33258 with calf thymus DNA, poly[d(A-T)], and d(CCGGAATTCCGG): multiple stoichiometries and determination of tight binding with a wide spectrum of site affinities. Biochemistry 1990; 29:9029-39; PMID:1702995; http://dx.doi.org/10.1021/bi00490a021
    • (1990) Biochemistry , vol.29 , pp. 9029-9039
    • Loontiens, F.G.1    Regenfuss, P.2    Zechel, A.3    Dumortier, L.4    Clegg, R.M.5
  • 30
    • 0016200497 scopus 로고
    • Fluorometric properties of the bibenzimidazole derivative Hoechst 33258, a fluorescent probe specific for AT concentration in chromosomal DNA
    • PMID: 4136742
    • Weisblum B, Haenssler E. Fluorometric properties of the bibenzimidazole derivative Hoechst 33258, a fluorescent probe specific for AT concentration in chromosomal DNA. Chromosoma 1974; 46:255-60; PMID: 4136742; http://dx.doi.org/10.1007/BF00284881
    • (1974) Chromosoma , vol.46 , pp. 255-260
    • Weisblum, B.1    Haenssler, E.2
  • 31
    • 0033168554 scopus 로고    scopus 로고
    • DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand
    • PMID:10373586;
    • Aymami J, Nunn CM, Neidle S. DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand. Nucleic Acids Res 1999; 27:2691-8; PMID:10373586; http://dx.doi.org/10.1093/nar/27.13.2691
    • (1999) Nucleic Acids Res , vol.27 , pp. 2691-2698
    • Aymami, J.1    Nunn, C.M.2    Neidle, S.3
  • 32
    • 58849130662 scopus 로고    scopus 로고
    • Light-induced dark states of organic fluochromes enable 30 nm resolution imaging in standard media
    • PMID:19167284;
    • Baddeley D, Jayasinghe ID, Cremer C, Cannell MB, Soeller C. Light-induced dark states of organic fluochromes enable 30 nm resolution imaging in standard media. Biophys J 2009; 96:L22-4; PMID:19167284; http://dx.doi.org/10.1016/j.bpj.2008.11.002
    • (2009) Biophys J , vol.96
    • Baddeley, D.1    Jayasinghe, I.D.2    Cremer, C.3    Cannell, M.B.4    Soeller, C.5
  • 33
    • 79957864009 scopus 로고    scopus 로고
    • 4D super-resolution microscopy with conventional fluorophores and single wavelength excitation in optically thick cells and tissues
    • PMID:21655189;
    • Baddeley D, Crossman D, Rossberger S, Cheyne JE, Montgomery JM, Jayasinghe ID, Cremer C, Cannell MB, Soeller C. 4D super-resolution microscopy with conventional fluorophores and single wavelength excitation in optically thick cells and tissues. PLoS One 2011; 6:e20645; PMID:21655189; http://dx.doi.org/10.1371/journal.pone.0020645
    • (2011) PLoS One , vol.6
    • Baddeley, D.1    Crossman, D.2    Rossberger, S.3    Cheyne, J.E.4    Montgomery, J.M.5    Jayasinghe, I.D.6    Cremer, C.7    Cannell, M.B.8    Soeller, C.9
  • 34
    • 84866315656 scopus 로고    scopus 로고
    • Localization microscopy (SPDM) reveals clustered formations of P-glycoprotein in a human blood-brain barrier model
    • PMID:22984556;
    • Huber O, Brunner A, Maier P, Kaufmann R, Couraud PO, Cremer C, Fricker G. Localization microscopy (SPDM) reveals clustered formations of P-glycoprotein in a human blood-brain barrier model. PLoS One 2012; 7:e44776; PMID:22984556; http://dx.doi.org/10.1371/journal.pone.0044776
    • (2012) PLoS One , vol.7
    • Huber, O.1    Brunner, A.2    Maier, P.3    Kaufmann, R.4    Couraud, P.O.5    Cremer, C.6    Fricker, G.7
  • 36
    • 4544381360 scopus 로고    scopus 로고
    • Minimizing photobleaching during confocal microscopy of fluorescent probes bound to chromatin: Role of anoxia and photon flux
    • PMID:15312193;
    • Bernas T, Zarebski M, Dobrucki J W, Cook PR. Minimizing photobleaching during confocal microscopy of fluorescent probes bound to chromatin: role of anoxia and photon flux. J Microsc 2004; 215:281-96; PMID:15312193; http://dx.doi.org/10.1111/j.0022-2720.2004.01377.x
    • (2004) J Microsc , vol.215 , pp. 281-296
    • Bernas, T.1    Zarebski, M.2    Dobrucki, J.W.3    Cook, P.R.4
  • 37
    • 0030029881 scopus 로고    scopus 로고
    • Influence of the triplet excited state on the photobleaching kinetics of fluorescein in microscopy
    • PMID:8744334;
    • Song L, Varma CA, Verhoe ven JW, Tanke HJ. Influence of the triplet excited state on the photobleaching kinetics of fluorescein in microscopy. Biophys J 1996; 70:2959-68; PMID:8744334; http://dx.doi.org/10.1016/S0006-3495(96)79866-1
    • (1996) Biophys J , vol.70 , pp. 2959-2968
    • Song, L.1    Varma, C.A.2    Verhoe, J.W.3    Tanke, H.J.4
  • 38
  • 39
    • 84897532001 scopus 로고    scopus 로고
    • Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system
    • PMID:24637835;
    • Anton T, Bultmann S, Leonhardt H, Markaki Y. Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system. Nucleus 2014; 5:163-72; PMID:24637835; http://dx.doi.org/10.4161/nucl.28488
    • (2014) Nucleus , vol.5 , pp. 163-172
    • Anton, T.1    Bultmann, S.2    Leonhardt, H.3    Markaki, Y.4
  • 40
    • 0038137213 scopus 로고    scopus 로고
    • Ensemble and single-molecule fluorescence spectroscopic study of the binding modes of the bis-benzimidazole derivative Hoechst 33258 with DNA
    • PMID:12682368;
    • Adhikary A, Buschmann V, Müller C, Sauer M. Ensemble and single-molecule fluorescence spectroscopic study of the binding modes of the bis-benzimidazole derivative Hoechst 33258 with DNA. Nucleic Acids Res 2003; 31:2178-86; PMID:12682368; http://dx.doi.org/10.1093/nar/gkg308
    • (2003) Nucleic Acids Res , vol.31 , pp. 2178-2186
    • Adhikary, A.1    Buschmann, V.2    Müller, C.3    Sauer, M.4
  • 42
    • 77949313003 scopus 로고    scopus 로고
    • Visualization of localization microscopy data
    • PMID:20082730;
    • Baddeley D, Cannell MB, Soeller C. Visualization of localization microscopy data. Microsc Microanal 2010; 16:64-72; PMID:20082730; http://dx.doi.org/10.1017/S143192760999122X
    • (2010) Microsc Microanal , vol.16 , pp. 64-72
    • Baddeley, D.1    Cannell, M.B.2    Soeller, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.