-
1
-
-
0028305058
-
a of N5 of dihydrofolate bound to dihydrofolate reductase: Mechanistic implications
-
a of N5 of dihydrofolate bound to dihydrofolate reductase: Mechanistic implications. Biochemistry 33(23):7021-7026.
-
(1994)
Biochemistry
, vol.33
, Issue.23
, pp. 7021-7026
-
-
Chen, Y.Q.1
Kraut, J.2
Blakley, R.L.3
Callender, R.4
-
2
-
-
0028985318
-
Isomorphous crystal structures of Escherichia coli dihydrofolate reductase complexed with folate, 5-deazafolate, and 5,10-dideazatetrahydrofolate: Mechanistic implications
-
Reyes VM, Sawaya MR, Brown KA, Kraut J (1995) Isomorphous crystal structures of Escherichia coli dihydrofolate reductase complexed with folate, 5-deazafolate, and 5,10-dideazatetrahydrofolate: Mechanistic implications. Biochemistry 34(8):2710-2723.
-
(1995)
Biochemistry
, vol.34
, Issue.8
, pp. 2710-2723
-
-
Reyes, V.M.1
Sawaya, M.R.2
Brown, K.A.3
Kraut, J.4
-
3
-
-
0031015737
-
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence
-
Sawaya MR, Kraut J (1997) Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence. Biochemistry 36(3):586-603.
-
(1997)
Biochemistry
, vol.36
, Issue.3
, pp. 586-603
-
-
Sawaya, M.R.1
Kraut, J.2
-
4
-
-
33644868469
-
Towards species-specific antifolates
-
Chan DC, Anderson AC (2006) Towards species-specific antifolates. Curr Med Chem 13(4):377-398.
-
(2006)
Curr Med Chem
, vol.13
, Issue.4
, pp. 377-398
-
-
Chan, D.C.1
Anderson, A.C.2
-
5
-
-
71749089415
-
Cancer research: From folate antagonism to molecular targets
-
Bertino JR (2009) Cancer research: From folate antagonism to molecular targets. Best Pract Res Clin Haematol 22(4):577-582.
-
(2009)
Best Pract Res Clin Haematol
, vol.22
, Issue.4
, pp. 577-582
-
-
Bertino, J.R.1
-
6
-
-
62949106183
-
Mutational "hot-spots" in mammalian, bacterial and protozoal dihydrofolate reductases associated with antifolate resistance: Sequence and structural comparison
-
Volpato JP, Pelletier JN (2009) Mutational "hot-spots" in mammalian, bacterial and protozoal dihydrofolate reductases associated with antifolate resistance: Sequence and structural comparison. Drug Resist Updat 12(1-2):28-41.
-
(2009)
Drug Resist Updat
, vol.12
, Issue.1-2
, pp. 28-41
-
-
Volpato, J.P.1
Pelletier, J.N.2
-
7
-
-
84892792977
-
Methotrexate: New uses for an old drug
-
Hashkes PJ, et al. (2014) Methotrexate: New uses for an old drug. J Pediatr 164(2): 231-236.
-
(2014)
J Pediatr
, vol.164
, Issue.2
, pp. 231-236
-
-
Hashkes, P.J.1
-
8
-
-
0023668190
-
Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli
-
Fierke CA, Johnson KA, Benkovic SJ (1987) Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli. Biochemistry 26(13):4085-4092.
-
(1987)
Biochemistry
, vol.26
, Issue.13
, pp. 4085-4092
-
-
Fierke, C.A.1
Johnson, K.A.2
Benkovic, S.J.3
-
9
-
-
0031808658
-
Stretching exercises - Flexibility in dihydrofolate reductase catalysis
-
Miller GP, Benkovic SJ (1998) Stretching exercises - flexibility in dihydrofolate reductase catalysis. Chem Biol 5(5):R105-R113.
-
(1998)
Chem Biol
, vol.5
, Issue.5
, pp. R105-R113
-
-
Miller, G.P.1
Benkovic, S.J.2
-
10
-
-
84961978282
-
Energetically most likely substrate and active-site protonation sites and pathways in the catalytic mechanism of dihydrofolate reductase
-
Cummins PL, Gready JE (2001) Energetically most likely substrate and active-site protonation sites and pathways in the catalytic mechanism of dihydrofolate reductase. J Am Chem Soc 123(15):3418-3428.
-
(2001)
J Am Chem Soc
, vol.123
, Issue.15
, pp. 3418-3428
-
-
Cummins, P.L.1
Gready, J.E.2
-
11
-
-
0037022683
-
Network of coupled promoting motions in enzyme catalysis
-
Agarwal PK, Billeter SR, Rajagopalan PT, Benkovic SJ, Hammes-Schiffer S (2002) Network of coupled promoting motions in enzyme catalysis. Proc Natl Acad Sci USA 99(5):2794-2799.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.5
, pp. 2794-2799
-
-
Agarwal, P.K.1
Billeter, S.R.2
Rajagopalan, P.T.3
Benkovic, S.J.4
Hammes-Schiffer, S.5
-
12
-
-
3042660150
-
Structure, dynamics, and catalytic function of dihydrofolate reductase
-
Schnell JR, Dyson HJ, Wright PE (2004) Structure, dynamics, and catalytic function of dihydrofolate reductase. Annu Rev Biophys Biomol Struct 33:119-140.
-
(2004)
Annu Rev Biophys Biomol Struct
, vol.33
, pp. 119-140
-
-
Schnell, J.R.1
Dyson, H.J.2
Wright, P.E.3
-
13
-
-
79955972786
-
Effect of pH on hydride transfer by Escherichia coli dihydrofolate reductase
-
Loveridge EJ, Allemann RK (2011) Effect of pH on hydride transfer by Escherichia coli dihydrofolate reductase. ChemBioChem 12(8):1258-1262.
-
(2011)
ChemBioChem
, vol.12
, Issue.8
, pp. 1258-1262
-
-
Loveridge, E.J.1
Allemann, R.K.2
-
14
-
-
79953823548
-
A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis
-
Bhabha G, et al. (2011) A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis. Science 332(6026):234-238.
-
(2011)
Science
, vol.332
, Issue.6026
, pp. 234-238
-
-
Bhabha, G.1
-
15
-
-
84858758329
-
Evidence that a "dynamic knockout" in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis
-
Loveridge EJ, Behiry EM, Guo J, Allemann RK (2012) Evidence that a "dynamic knockout" in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis. Nat Chem 4(4):292-297.
-
(2012)
Nat Chem
, vol.4
, Issue.4
, pp. 292-297
-
-
Loveridge, E.J.1
Behiry, E.M.2
Guo, J.3
Allemann, R.K.4
-
16
-
-
33748781457
-
The dynamic energy landscape of dihydrofolate reductase catalysis
-
Boehr DD, McElheny D, Dyson HJ, Wright PE (2006) The dynamic energy landscape of dihydrofolate reductase catalysis. Science 313(5793):1638-1642.
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1638-1642
-
-
Boehr, D.D.1
McElheny, D.2
Dyson, H.J.3
Wright, P.E.4
-
17
-
-
0028049327
-
Dynamics of a flexible loop in dihydrofolate reductase from Escherichia coli and its implication for catalysis
-
Falzone CJ, Wright PE, Benkovic SJ (1994) Dynamics of a flexible loop in dihydrofolate reductase from Escherichia coli and its implication for catalysis. Biochemistry 33(2):439-442.
-
(1994)
Biochemistry
, vol.33
, Issue.2
, pp. 439-442
-
-
Falzone, C.J.1
Wright, P.E.2
Benkovic, S.J.3
-
18
-
-
0036112608
-
Role of water in the catalytic cycle of E. coli dihydrofolate reductase
-
Shrimpton P, Allemann RK (2002) Role of water in the catalytic cycle of E. coli dihydrofolate reductase. Protein Sci 11(6):1442-1451.
-
(2002)
Protein Sci
, vol.11
, Issue.6
, pp. 1442-1451
-
-
Shrimpton, P.1
Allemann, R.K.2
-
20
-
-
0022546047
-
Functional role of aspartic acid-27 in dihydrofolate reductase revealed by mutagenesis
-
Howell EE, Villafranca JE, Warren MS, Oatley SJ, Kraut J (1986) Functional role of aspartic acid-27 in dihydrofolate reductase revealed by mutagenesis. Science 231(4742):1123-1128.
-
(1986)
Science
, vol.231
, Issue.4742
, pp. 1123-1128
-
-
Howell, E.E.1
Villafranca, J.E.2
Warren, M.S.3
Oatley, S.J.4
Kraut, J.5
-
21
-
-
0025292374
-
Dissociation constants for dihydrofolic acid and dihydrobiopterin and implications for mechanistic models for dihydrofolate reductase
-
Maharaj G, et al. (1990) Dissociation constants for dihydrofolic acid and dihydrobiopterin and implications for mechanistic models for dihydrofolate reductase. Biochemistry 29(19):4554-4560.
-
(1990)
Biochemistry
, vol.29
, Issue.19
, pp. 4554-4560
-
-
Maharaj, G.1
-
22
-
-
84919934356
-
Escherichia coli dihydrofolate reductase catalyzed proton and hydride transfers: Temporal order and the roles of Asp27 and Tyr100
-
Liu CT, et al. (2014) Escherichia coli dihydrofolate reductase catalyzed proton and hydride transfers: Temporal order and the roles of Asp27 and Tyr100. Proc Natl Acad Sci USA 111:18231-18236.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 18231-18236
-
-
Liu, C.T.1
-
23
-
-
0026095360
-
Theoretical studies on the dihydrofolate reductase mechanism: Electronic polarization of bound substrates
-
Bajorath J, Kraut J, Li ZQ, Kitson DH, Hagler AT (1991) Theoretical studies on the dihydrofolate reductase mechanism: Electronic polarization of bound substrates. Proc Natl Acad Sci USA 88(15):6423-6426.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, Issue.15
, pp. 6423-6426
-
-
Bajorath, J.1
Kraut, J.2
Li, Z.Q.3
Kitson, D.H.4
Hagler, A.T.5
-
24
-
-
0029894436
-
Crystal structures of Escherichia coli dihydrofolate reductase complexed with 5-formyltetrahydrofolate (folinic acid) in two space groups: Evidence for enolization of pteridine O4
-
Lee H, Reyes VM, Kraut J (1996) Crystal structures of Escherichia coli dihydrofolate reductase complexed with 5-formyltetrahydrofolate (folinic acid) in two space groups: Evidence for enolization of pteridine O4. Biochemistry 35(22):7012-7020.
-
(1996)
Biochemistry
, vol.35
, Issue.22
, pp. 7012-7020
-
-
Lee, H.1
Reyes, V.M.2
Kraut, J.3
-
25
-
-
0027340140
-
13C and 15N nuclear magnetic resonance evidence that the active site carboxyl group of dihydrofolate reductase is not involved in the relay of a proton to substrate
-
Blakley RL, Appleman JR, Freisheim JH, Jablonsky MJ (1993) 13C and 15N nuclear magnetic resonance evidence that the active site carboxyl group of dihydrofolate reductase is not involved in the relay of a proton to substrate. Arch Biochem Biophys 306(2):501-509.
-
(1993)
Arch Biochem Biophys
, vol.306
, Issue.2
, pp. 501-509
-
-
Blakley, R.L.1
Appleman, J.R.2
Freisheim, J.H.3
Jablonsky, M.J.4
-
26
-
-
84863476935
-
Protonation-state determination in proteins using high-resolution X-ray crystallography: Effects of resolution and completeness
-
Fisher SJ, Blakeley MP, Cianci M, McSweeney S, Helliwell JR (2012) Protonation-state determination in proteins using high-resolution X-ray crystallography: Effects of resolution and completeness. Acta Crystallogr D Biol Crystallogr 68(Pt 7):800-809.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, pp. 800-809
-
-
Fisher, S.J.1
Blakeley, M.P.2
Cianci, M.3
McSweeney, S.4
Helliwell, J.R.5
-
27
-
-
0020488766
-
Protein dynamics investigated by the neutron diffractionhydrogen exchange technique
-
Kossiakoff AA (1982) Protein dynamics investigated by the neutron diffractionhydrogen exchange technique. Nature 296(5859):713-721.
-
(1982)
Nature
, vol.296
, Issue.5859
, pp. 713-721
-
-
Kossiakoff, A.A.1
-
28
-
-
33845492587
-
Neutron diffraction studies of Escherichia coli dihydrofolate reductase complexed with methotrexate
-
Bennett BC, et al. (2006) Neutron diffraction studies of Escherichia coli dihydrofolate reductase complexed with methotrexate. Proc Natl Acad Sci USA 103(49):18493-18498.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.49
, pp. 18493-18498
-
-
Bennett, B.C.1
-
29
-
-
44949239669
-
The catalytic mechanism of an aspartic proteinase explored with neutron and X-ray diffraction
-
Coates L, et al. (2008) The catalytic mechanism of an aspartic proteinase explored with neutron and X-ray diffraction. J Am Chem Soc 130(23):7235-7237.
-
(2008)
J Am Chem Soc
, vol.130
, Issue.23
, pp. 7235-7237
-
-
Coates, L.1
-
30
-
-
77953546976
-
Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: A joint x-ray and neutron diffraction study
-
Kovalevsky AY, et al. (2010) Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: A joint x-ray and neutron diffraction study. Structure 18(6):688-699.
-
(2010)
Structure
, vol.18
, Issue.6
, pp. 688-699
-
-
Kovalevsky, A.Y.1
-
31
-
-
0033135301
-
Quasi-Laue neutron-diffraction study of the water arrangement in crystals of triclinic hen egg-white lysozyme
-
Bon C, Lehmann MS, Wilkinson C (1999) Quasi-Laue neutron-diffraction study of the water arrangement in crystals of triclinic hen egg-white lysozyme. Acta Crystallogr D Biol Crystallogr 55(Pt 5):978-987.
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, pp. 978-987
-
-
Bon, C.1
Lehmann, M.S.2
Wilkinson, C.3
-
32
-
-
79961217081
-
Identification of the elusive hydronium ion exchanging roles with a proton in an enzyme at lower pH values
-
Kovalevsky AY, et al. (2011) Identification of the elusive hydronium ion exchanging roles with a proton in an enzyme at lower pH values. Angew Chem Int Ed Engl 50(33):7520-7523.
-
(2011)
Angew Chem Int Ed Engl
, vol.50
, Issue.33
, pp. 7520-7523
-
-
Kovalevsky, A.Y.1
-
34
-
-
0015860668
-
Proton magnetic resonance studies of folate, dihydrofolate, and methotrexate: Evidence from pH and concentration studies for dimerization
-
Poe M (1973) Proton magnetic resonance studies of folate, dihydrofolate, and methotrexate: Evidence from pH and concentration studies for dimerization. J Biol Chem 248(20):7025-7032.
-
(1973)
J Biol Chem
, vol.248
, Issue.20
, pp. 7025-7032
-
-
Poe, M.1
-
35
-
-
33748943839
-
Determination of dissociation constants of folic acid, methotrexate, and other photolabile pteridines by pressure-assisted capillary electrophoresis
-
Szakács Z, Noszál B (2006) Determination of dissociation constants of folic acid, methotrexate, and other photolabile pteridines by pressure-assisted capillary electrophoresis. Electrophoresis 27(17):3399-3409.
-
(2006)
Electrophoresis
, vol.27
, Issue.17
, pp. 3399-3409
-
-
Szakács, Z.1
Noszál, B.2
-
36
-
-
84902319994
-
Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR
-
Keedy DA, et al. (2014) Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR. Structure 22(6):899-910.
-
(2014)
Structure
, vol.22
, Issue.6
, pp. 899-910
-
-
Keedy, D.A.1
-
37
-
-
45749126511
-
On the determinants of amide backbone exchange in proteins: A neutron crystallographic comparative study
-
Bennett BC, Gardberg AS, Blair MD, Dealwis CG (2008) On the determinants of amide backbone exchange in proteins: A neutron crystallographic comparative study. Acta Crystallogr D Biol Crystallogr D64(Pt 7):764-783.
-
(2008)
Acta Crystallogr D Biol Crystallogr
, vol.D64
, pp. 764-783
-
-
Bennett, B.C.1
Gardberg, A.S.2
Blair, M.D.3
Dealwis, C.G.4
-
38
-
-
0033594816
-
a of aspartic acid 26 in Lactobacillus casei dihydrofolate reductase: Implications for the catalytic mechanism
-
a of aspartic acid 26 in Lactobacillus casei dihydrofolate reductase: Implications for the catalytic mechanism. Biochemistry 38(25):8038-8044.
-
(1999)
Biochemistry
, vol.38
, Issue.25
, pp. 8038-8044
-
-
Casarotto, M.G.1
Basran, J.2
Badii, R.3
Sze, K.H.4
Roberts, G.C.5
-
39
-
-
0025270551
-
+ ternary complex. Substrate binding and a model for the transition state
-
+ ternary complex. Substrate binding and a model for the transition state. Biochemistry 29(13):3263-3277.
-
(1990)
Biochemistry
, vol.29
, Issue.13
, pp. 3263-3277
-
-
Bystroff, C.1
Oatley, S.J.2
Kraut, J.3
-
40
-
-
0025184401
-
A second-site mutation at phenylalanine-137 that increases catalytic efficiency in the mutant aspartate-27-serine Escherichia coli dihydrofolate reductase
-
Howell EE, Booth C, Farnum M, Kraut J, Warren MS (1990) A second-site mutation at phenylalanine-137 that increases catalytic efficiency in the mutant aspartate-27-serine Escherichia coli dihydrofolate reductase. Biochemistry 29(37):8561-8569.
-
(1990)
Biochemistry
, vol.29
, Issue.37
, pp. 8561-8569
-
-
Howell, E.E.1
Booth, C.2
Farnum, M.3
Kraut, J.4
Warren, M.S.5
-
41
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
|