Introduction to superresolution microscopy

Topics in Applied Physics

Volumn 129, Issue , 2015, Pages 495-515

  Chu, Shi Wei ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84914706477     PISSN: 03034216     EISSN: 14370859     Source Type: Book Series    
DOI: 10.1007/978-94-017-9392-6_28     Document Type: Article

References (68)

1. M. Born, E. Wolf, Principles of Optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light (Cambridge University Press, Cambridge, 1999)
2. J. Goodman, Introduction to Fourier Optics (Roberts & Company Publishers, Greenwood Village, 2004)
3. S.W. Hell, Far-field optical nanoscopy. Science 316, 1153-1158 (2007)
4. B. Huang, M. Bates, X. Zhuang, Super-resolution fluorescence microscopy. Ann. Rev. Biochem. 78, 993-1016 (2009)
5. M. Heilemann, Fluorescence microscopy beyond the diffraction limit. J. Biotechnol. 149, 243-251 (2010)
6. L. Schermelleh, R. Heintzmann, H. Leonhardt, A guide to super-resolution fluorescence microscopy. J. Cell Biol. 190, 165-175 (2010)
7. S. van de Linde, M. Heilemann, M. Sauer, Live-cell super-resolution imaging with synthetic fluorophores. Ann. Rev. Phys. Chem. 63, 519-540 (2012)
8. U. Agrawal, D.T. Reilly, C.M. Schroeder, Zooming in on biological processes with fluorescence nanoscopy. Curr. Opin. Biotech. 24, 646-653 (2013)
9. R. Heintzmann, H. Münch, C. Cremer, High-precision measurements in epifluorescent microscopy—simulation and experiment. Cell Vision 4, 252-253 (1997)
10. H. Bornfleth, K. Satzler, R. Eils, C. Cremer, High-precision distance measurements and volume-conserving segmentation of objects near and below the resolution limit in three-dimensional confocal fluorescence microscopy. J. Microsc. Oxf. 189, 118-136 (1998)
11. C. Cremer, R. Kaufmann, M. Gunkel, S. Pres, Y. Weiland, P. Muller, T. Ruckelshausen, P. Lemmer, F. Geiger, S. Degenhard, C. Wege, N.A.W. Lemmermann, R. Holtappels, H. Strickfaden, M. Hausmann, Superresolution imaging of biological nanostructures by spectral precision distance microscopy. Biotech. J. 6, 1037-1051 (2011)
12. X.X. Zhou, M.Z. Lin, Photoswitchable fluorescent proteins: ten years of colorful chemistry and exciting applications. Curr. Opin. Chem. Biol. 17, 682-690 (2013)
13. T. Ha, P. Tinnefeld, Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging. Ann. Rev. Phys. Chem. 63, 595-617 (2012)
14. Z.Y. Tian, W.W. Wu, A.D.Q. Li, Photoswitchable fluorescent nanoparticles: preparation, properties and applications. Chem. Phys. Chem. 10, 2577-2591 (2009)
15. E. Betzig, G.H. Patterson, R. Sougrat, O.W. Lindwasser, S. Olenych, J.S. Bonifacino, M.W. Davidson, J. Lippincott-Schwartz, H.F. Hess, Imaging intracellular fluorescent proteins at nanometer resolution. Science 313, 1642-1645 (2006)
16. S.T. Hess, T.P.K. Girirajan, M.D. Mason, Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys. J. 91, 4258-4272 (2006)
17. M.J. Rust, M. Bates, X.W. Zhuang, Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3, 793-795 (2006)
18. B. Huang, S.A. Jones, B. Brandenburg, X.W. Zhuang, Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution. Nat. Methods 5, 1047-1052 (2008)
19. M.F. Juette, T.J. Gould, M.D. Lessard, M.J. Mlodzianoski, B.S. Nagpure, B.T. Bennett, S.T. Hess, J. Bewersdorf, Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples. Nat. Methods 5, 527-529 (2008)
20. S.R.P. Pavani, M.A. Thompson, J.S. Biteen, S.J. Lord, N. Liu, R.J. Twieg, R. Piestun, W.E. Moerner, Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function. Proc. Natl. Acad. Sci. USA 106, 2995-2999 (2009)
21. C. Flors, J. Hotta, H. Uji-i, P. Dedecker, R. Ando, H. Mizuno, A. Miyawaki, J. Hofkens, A stroboscopic approach for fast photoactivation-localization microscopy with Dronpa mutants. J. Am. Chem. Soc. 129, 13970-13977 (2007)
22. L. Zhu, W. Zhang, D. Elnatan, B. Huang, Faster STORM using compressed sensing. Nat. Methods 9, 721-U286 (2012)
23. S.W. Hell, J. Wichmann, Breaking the diffraction resolution limit by stimulated-emissiondepletion fluoresecence microscopy. Opt. Lett. 19, 780-782 (1994)
24. T.A. Klar, S. Jakobs, M. Dyba, A. Egner, S.W. Hell, Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission. Proc. Natl. Acad. Sci. USA 97, 8206-8210 (2000)
25. S.W. Hell, M. Dyba, S. Jakobs, Concepts for nanoscale resolution in fluorescence microscopy. Cur. Opin. Neurobiol. 14, 599-609 (2004)
26. B. Harke, J. Keller, C.K. Ullal, V. Westphal, A. Schoenle, S.W. Hell, Resolution scaling in STED microscopy. Opt. Exp. 16, 4154-4162 (2008)
27. M. Reuss, J. Engelhardt, S.W. Hell, Birefringent device converts a standard scanning microscope into a STED microscope that also maps molecular orientation. Opt. Exp. 18, 1049-1058 (2010)
28. R.J. Kittel, C. Wichmann, T.M. Rasse, W. Fouquet, M. Schmidt, A. Schmid, D.A. Wagh, C. Pawlu, R.R. Kellner, K.I. Willig, S.W. Hell, E. Buchner, M. Heckmann, S.J. Sigrist, Bruchpilot promotes active zone assembly, Ca2+ channel clustering, and vesicle release. Science 312, 1051-1054 (2006)
29. K.I. Willig, S.O. Rizzoli, V. Westphal, R. Jahn, S.W. Hell, STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis. Nature 440, 935-939 (2006)
30. B. Hein, K.I. Willig, S.W. Hell, Stimulated emission depletion (STED) nanoscopy of a fluorescent protein-labeled organelle inside a living cell. Proc. Natl. Acad. Sci. USA 105, 14271-14276 (2008)
31. C. Eggeling, C. Ringemann, R. Medda, G. Schwarzmann, K. Sandhoff, S. Polyakova, V.N. Belov, B. Hein, C. von Middendorff, A. Schonle, S.W. Hell, Direct observation of the nanoscale dynamics of membrane lipids in a living cell. Nature 457, 1159-U1121 (2009)
32. C. Eggeling, K.I. Willig, F.J. Barrantes, STED microscopy of living cells-new frontiers in membrane and neurobiology. J. Neurochem. 126, 203-212 (2013)
33. E. Rittweger, K.Y. Han, S.E. Irvine, C. Eggeling, S.W. Hell, STED microscopy reveals crystal colour centres with nanometric resolution. Nature Photon. 3, 144-147 (2009)
34. A. Bril, On the saturation of fluorescence with cathode-ray excitation. Physica 15, 361-379 (1949)
35. R. Altkorn, R.N. Zare, Effects of saturation on laser-induced fluorescence measurements of population and polarization. Ann. Rev. Phys. Chem. 35, 265-289 (1984)
36. K. Fujita, M. Kobayashi, S. Kawano, M. Yamanaka, S. Kawata, High-resolution confocal microscopy by saturated excitation of fluorescence. Phys. Rev. Lett. 99, 228105 (2007)
37. M. Yamanaka, Y.K. Tzeng, S. Kawano, N.I. Smith, S. Kawata, H.C. Chang, K. Fujita, SAX microscopy with fluorescent nanodiamond probes for high-resolution fluorescence imaging. Biomed. Opt. Exp. 2, 1946-1954 (2011)
38. M. Yamanaka, K. Saito, N.I. Smith, S. Kawata, T. Nagai, K. Fujita, Saturated excitation of fluorescent proteins for subdiffraction-limited imaging of living cells in three dimensions. Interface Focus 3(6), 20130007 (2013)
39. M.G.L. Gustafsson, Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J. Microsc. Oxf. 198, 82-87 (2000)
40. M.G.L. Gustafsson, L. Shao, P.M. Carlton, C.J.R. Wang, I.N. Golubovskaya, W.Z. Cande, D.A. Agard, J.W. Sedat, Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophys. J. 94, 4957-4970 (2008)
41. L. Schermelleh, P.M. Carlton, S. Haase, L. Shao, L. Winoto, P. Kner, B. Burke, M.C. Cardoso, D.A. Agard, M.G.L. Gustafsson, H. Leonhardt, J.W. Sedat, Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science 320, 1332-1336 (2008)
42. R. Heintzmann, T.M. Jovin, C. Cremer, Saturated patterned excitation microscopy—a concept for optical resolution improvement. J. Opt. Soc. Am. A Opt. Image Sci. Vis. 19, 1599-1609 (2002)
43. M.G.L. Gustafsson, Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution. Proc. Natl. Acad. Sci. USA 102, 13081-13086 (2005)
44. E.H. Rego, L. Shao, J.J. Macklin, L. Winoto, G.A. Johansson, N. Kamps-Hughes, M.W. Davidson, M.G.L. Gustafsson, Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution. Proc. Natl. Acad. Sci. USA 109, E135-E143 (2012)
45. P. Wang, M.N. Slipchenko, J. Mitchell, C. Yang, E.O. Potma, X.F. Xu, J.X. Cheng, Far-field imaging of non-fluorescent species with subdiffraction resolution. Nat. Photon. 7, 450-454 (2013)
46. T.Y. Su, R. Oketani, Y.T. Huang, H.Y. Wu, Y. Yonemaru, M. Yamanaka, H. Lee, G.Y. Zhuo, M.Y. Lee, S. Kawata, K. Fujita, Measurement of a saturated emission of optical radiation from gold nanoparticles: application to an ultrahigh resolution microscope. Phys. Rev. Lett. 112, 017402 (2014)
47. S.W. Chu, H.Y. Wu, Y.T. Huang, T.Y. Su, H. Lee, Y. Yonemaru, M. Yamanaka, R. Oketani, S. Kawata, S. Shoji, K. Fujita, Saturation and reverse saturation of scattering in a single plasmonic nanoparticle. ACS Photon. 1, 32-37 (2014)
48. B. Lee, S. Kim, H. Kim, Y. Lim, The use of plasmonics in light beaming and focusing. Prog. Quant. Electron. 34, 47-87 (2010)
49. S. Lal, S. Link, N.J. Halas, Nano-optics from sensing to waveguiding. Nat. Photon. 1, 641-648 (2007)
50. M.P. Nezhad, A. Simic, O. Bondarenko, B. Slutsky, A. Mizrahi, L.A. Feng, V. Lomakin, Y. Fainman, Room-temperature subwavelength metallo-dielectric lasers. Nat. Photon. 4, 395-399 (2010)
51. N. Fang, H. Lee, C. Sun, X. Zhang, Sub-diffraction-limited optical imaging with a silver superlens. Science 308, 534-537 (2005)
52. T. Ichimura, N. Hayazawa, M. Hashimoto, Y. Inouye, S. Kawata, Tip-enhanced coherent anti-Stokes Raman scattering for vibrational nanoimaging. Phys. Rev. Lett. 92, 220801 (2004)
53. K.M. Hajek, B. Littleton, D. Turk, T.J. McIntyre, H. Rubinsztein-Dunlop, A method for achieving super-resolved widefield CARS microscopy. Opt. Exp. 18, 19263-19272 (2010)
54. T.S. Ahmadi, S.L. Logunov, M.A. El-Sayed, Picosecond dynamics of colloidal gold nanoparticles. J. Phys. Chem. 100, 8053-8056 (1996)
55. I. Ros, P. Schiavuta, V. Bello, G. Mattei, R. Bozio, Femtosecond nonlinear absorption of gold nanoshells at surface plasmon resonance. Phys. Chem. Chem. Phys. 12, 13692-13698 (2010)
56. S.S. Chong, W. Min, X.S. Xie, Ground-state depletion microscopy: detection sensitivity of single-molecule optical absorption at room temperature. J. Phys. Chem. Lett. 1, 3316-3322 (2010)
57. C.F. Bohren, D.R. Huffman, Absorption and scattering of light by small particles (Wiley, Weinheim, 1983)
58. K.H. Su, Q.H. Wei, X. Zhang, J.J. Mock, D.R. Smith, S. Schultz, Interparticle coupling effects on plasmon resonances of nanogold particles. Nano Lett. 3, 1087-1090 (2003)
59. A.M. Schwartzberg, J.Z. Zhang, Novel optical properties and emerging applications of metal nanostructures. J. Phys. Chem. C 112, 10323-10337 (2008)
60. H. Shroff, C.G. Galbraith, J.A. Galbraith, H. White, J. Gillette, S. Olenych, M.W. Davidson, E. Betzig, Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes. Proc. Natl. Acad. Sci. USA 104, 20308-20313 (2007)
61. J. Tonnesen, F. Nadrigny, K.I. Willig, R. Wedlich-Soldner, U.V. Nagerl, Two-color STED microscopy of living synapses using a single laser-beam pair. Biophys. J. 101, 2545-2552 (2011)
62. S.A. Jones, S.H. Shim, J. He, X.W. Zhuang, Fast, three-dimensional super-resolution imaging of live cells. Nat. Methods 8, 499-U496 (2011)
63. T. Grotjohann, I. Testa, M. Leutenegger, H. Bock, N.T. Urban, F. Lavoie-Cardinal, K.I. Willig, C. Eggeling, S. Jakobs, S.W. Hell, Diffraction-unlimited all-optical imaging and writing with a photochromic GFP. Nature 478, 204-208 (2011)
64. B.G. Kopek, G. Shtengel, J.B. Grimm, D.A. Clayton, H.F. Hess, Correlative photoactivated localization and scanning electron microscopy. PLoS One 8, e77209 (2013)
65. N.T. Urban, K.I. Willig, S.W. Hell, U.V. Nagerl, STED nanoscopy of actin dynamics in synapses deep inside living brain slices. Biophys. J. 101, 1277-1284 (2011)
66. P. Bethge, R. Chereau, E. Avignone, G. Marsicano, U.V. Nagerl, Two-photon excitation STED microscopy in two colors in acute brain slices. Biophys. J. 104, 778-785 (2013)
67. A. Vaziri, J.Y. Tang, H. Shroff, C.V. Shank, Multilayer three-dimensional super resolution imaging of thick biological samples. Proc. Natl. Acad. Sci. USA 105, 20221-20226 (2008)
68. V. Westphal, S.O. Rizzoli, M.A. Lauterbach, D. Kamin, R. Jahn, S.W. Hell, Video-rate farfield optical nanoscopy dissects synaptic vesicle movement. Science 320, 246-249 (2008)