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Volumn 9, Issue 9, 2014, Pages

De novo assembly and characterization of the fruit transcriptome of Chinese jujube (Ziziphus jujuba Mill.) using 454 pyrosequencing and the development of novel tri-nucleotide SSR markers

Author keywords

[No Author keywords available]

Indexed keywords

ASCORBIC ACID; COMPLEMENTARY DNA; TRANSCRIPTOME; MICROSATELLITE DNA;

EID: 84906959616     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0106438     Document Type: Article
Times cited : (32)

References (95)
  • 1
    • 84960273205 scopus 로고    scopus 로고
    • Chinese Jujube: Botany and Horticulture
    • Liu M (2006) Chinese Jujube: Botany and Horticulture. Horticultural Reviews 32: 229-298.
    • (2006) Horticultural Reviews , vol.32 , pp. 229-298
    • Liu, M.1
  • 2
    • 84879253190 scopus 로고
    • Jujubes cultivation in ancient China
    • in Chinese
    • Qu ZZ (1963) Jujubes cultivation in ancient China. Journal of Hebei Agricultural University 2(2): 1-18 (in Chinese).
    • (1963) Journal of Hebei Agricultural University , vol.2 , Issue.2 , pp. 1-18
    • Qu, Z.Z.1
  • 4
    • 84878032148 scopus 로고    scopus 로고
    • Estimation of genome size of Ziziphus jujuba and ZCrossed D sign acdiojujuba
    • in Chinese with English abstract
    • Wu LP, Tang Y, Li YY, Ying DN, Pang XM (2013) Estimation of genome size of Ziziphus jujuba and ZCrossed D sign acdiojujuba. Journal of Beijing Forestry University 35(3): 77-83 (in Chinese with English abstract).
    • (2013) Journal of Beijing Forestry University , vol.35 , Issue.3 , pp. 77-83
    • Wu, L.P.1    Tang, Y.2    Li, Y.Y.3    Ying, D.N.4    Pang, X.M.5
  • 5
    • 85016259223 scopus 로고    scopus 로고
    • Karyotypes of Different Strains in Ziziphus jujuba Mill.'Zanhuang Dazao'
    • in Chinese with English abstract
    • Peng JY, Liu P, Zhou JY, Peng SQ, Cao QG, et al. (2005) Karyotypes of Different Strains in Ziziphus jujuba Mill.'Zanhuang Dazao'. Acta Horticulturae Sinica 32(5): 798-801. (in Chinese with English abstract).
    • (2005) Acta Horticulturae Sinica , vol.32 , Issue.5 , pp. 798-801
    • Peng, J.Y.1    Liu, P.2    Zhou, J.Y.3    Peng, S.Q.4    Cao, Q.G.5
  • 6
    • 84906967004 scopus 로고    scopus 로고
    • Discovery and Identification of Natural Triploid Ploidy of Chinese Jujube Cultivar 'Pingguozao'
    • in Chinese with English abstract
    • Liu XS, Chen L, Wang JX, Li L, Peng JY (2013) Discovery and Identification of Natural Triploid Ploidy of Chinese Jujube Cultivar 'Pingguozao'. Acta Horticulturae Sinica 40 (3): 426-432. (in Chinese with English abstract).
    • (2013) Acta Horticulturae Sinica , vol.40 , Issue.3 , pp. 426-432
    • Liu, X.S.1    Chen, L.2    Wang, J.X.3    Li, L.4    Peng, J.Y.5
  • 7
    • 33846912685 scopus 로고    scopus 로고
    • Nutritional composition of five cultivars of Chinese jujube
    • Li JW, Fan LP, Ding SD, Ding XL (2007) Nutritional composition of five cultivars of Chinese jujube. Food chemistry 103(2): 454-460.
    • (2007) Food Chemistry , vol.103 , Issue.2 , pp. 454-460
    • Li, J.W.1    Fan, L.P.2    Ding, S.D.3    Ding, X.L.4
  • 8
    • 84876157286 scopus 로고    scopus 로고
    • The jujube (Ziziphus jujuba Mill.) fruit: A review of current knowledge of fruit composition and health benefits
    • Gao QH, Wu CS, Wang M (2013) The jujube (Ziziphus jujuba Mill.) fruit: a review of current knowledge of fruit composition and health benefits. Journal of agricultural and food chemistry 61(14): 3351-3363.
    • (2013) Journal of Agricultural and Food Chemistry , vol.61 , Issue.14 , pp. 3351-3363
    • Gao, Q.H.1    Wu, C.S.2    Wang, M.3
  • 9
    • 77953600890 scopus 로고    scopus 로고
    • Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    • Guo S, Zheng Y, Joung JG, Liu S, Zhang Z, et al. (2010) Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC genomics 11: 384.
    • (2010) BMC Genomics , vol.11 , pp. 384
    • Guo, S.1    Zheng, Y.2    Joung, J.G.3    Liu, S.4    Zhang, Z.5
  • 10
    • 75649133875 scopus 로고    scopus 로고
    • Germplasm resources and production of Jujube in China
    • Liu M, Zhao Z (2008) Germplasm resources and production of Jujube in China. International Jujube Symposium 840: 25-32.
    • (2008) International Jujube Symposium , vol.840 , pp. 25-32
    • Liu, M.1    Zhao, Z.2
  • 12
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening
    • Giovannoni JJ (2004) Genetic regulation of fruit development and ripening. The Plant Cell Online (suppl 1): S170-S180.
    • (2004) The Plant Cell Online , pp. S170-S180
    • Giovannoni, J.J.1
  • 13
    • 63549110574 scopus 로고    scopus 로고
    • Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development
    • Mounet F, Moing A, Garcia V, Petit J, Maucourt M, et al. (2009) Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development. Plant Physiology 149(3):1505-1528.
    • (2009) Plant Physiology , vol.149 , Issue.3 , pp. 1505-1528
    • Mounet, F.1    Moing, A.2    Garcia, V.3    Petit, J.4    Maucourt, M.5
  • 16
    • 84888787181 scopus 로고    scopus 로고
    • A Chinese jujube (Ziziphus jujuba Mill.) fruit-expressed sequence tag (EST) library: Annotation and EST-SSR characterization
    • Liu J, Liu H, Ma L, Wang S, Gao J, et al. (2014) A Chinese jujube (Ziziphus jujuba Mill.) fruit-expressed sequence tag (EST) library: Annotation and EST-SSR characterization. Scientia Horticulturae 165: 99-105.
    • (2014) Scientia Horticulturae , vol.165 , pp. 99-105
    • Liu, J.1    Liu, H.2    Ma, L.3    Wang, S.4    Gao, J.5
  • 17
    • 84878107785 scopus 로고    scopus 로고
    • Identification of genes associated with fruit ripening in Ziziphus jujuba using suppression subtractive hybridization approach
    • Lin X, Yao L, Li Y, Wu R, Pang X (2013) Identification of genes associated with fruit ripening in Ziziphus jujuba using suppression subtractive hybridization approach. Acta Physiologiae Plantarum 1-12.
    • (2013) Acta Physiologiae Plantarum , pp. 1-12
    • Lin, X.1    Yao, L.2    Li, Y.3    Wu, R.4    Pang, X.5
  • 18
    • 65349159741 scopus 로고    scopus 로고
    • New technologies for ultra-high throughput genotyping in plants
    • Springer
    • Appleby N, Edwards D, Batley J (2009) New technologies for ultra-high throughput genotyping in plants. In: Plant Genomics. Springer 19-39.
    • (2009) Plant Genomics , pp. 19-39
    • Appleby, N.1    Edwards, D.2    Batley, J.3
  • 19
    • 0347358913 scopus 로고    scopus 로고
    • The evolution of molecular markers-just a matter of fashion?
    • Schlötterer C (2004) The evolution of molecular markers-just a matter of fashion? Nature Reviews Genetics 5(1): 63-69.
    • (2004) Nature Reviews Genetics , vol.5 , Issue.1 , pp. 63-69
    • Schlötterer, C.1
  • 20
    • 77957742080 scopus 로고    scopus 로고
    • Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding
    • Mammadov JA, Chen W, Ren R, Pai R, Marchione W, et al. (2010) Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding. Theoretical and applied genetics 121(3): 577-588.
    • (2010) Theoretical and Applied Genetics , vol.121 , Issue.3 , pp. 577-588
    • Mammadov, J.A.1    Chen, W.2    Ren, R.3    Pai, R.4    Marchione, W.5
  • 22
    • 0024387394 scopus 로고
    • Hypervariabflity of simple sequences as a general source for polymorphic DNA markers
    • Tautz D (1989) Hypervariabflity of simple sequences as a general source for polymorphic DNA markers. Nucleic acids research 17(16):6463-6471.
    • (1989) Nucleic Acids Research , vol.17 , Issue.16 , pp. 6463-6471
    • Tautz, D.1
  • 23
    • 80052825742 scopus 로고    scopus 로고
    • Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers
    • Wei W, Qi X, Wang L, Zhang Y, Hua W, et al. (2011) Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC genomics 12(1):451.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 451
    • Wei, W.1    Qi, X.2    Wang, L.3    Zhang, Y.4    Hua, W.5
  • 24
    • 84863662938 scopus 로고    scopus 로고
    • Development and Characterization of EST-SSR Markers from NCBI and cDNA Library in Cultivated Peanut (Arachis hypogaea L.)
    • Pan L, Yang Q, Yu S, Wang J (2010) Development and Characterization of EST-SSR Markers from NCBI and cDNA Library in Cultivated Peanut (Arachis hypogaea L.). Legume Genomics and Genetics 1.
    • (2010) Legume Genomics and Genetics , vol.1
    • Pan, L.1    Yang, Q.2    Yu, S.3    Wang, J.4
  • 25
    • 46049117054 scopus 로고    scopus 로고
    • Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping
    • Luro FL, Costantino G, Terol J, Argout X, Allario T, et al. (2008) Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping. BMC genomics 9(1): 287.
    • (2008) BMC Genomics , vol.9 , Issue.1 , pp. 287
    • Luro, F.L.1    Costantino, G.2    Terol, J.3    Argout, X.4    Allario, T.5
  • 26
    • 33748967940 scopus 로고    scopus 로고
    • SSR mining in coffee tree EST databases: Potential use of EST-SSRs as markers for the Coffea genus
    • Poncet V, Rondeau M, Tranchant C, Cayrel A, Hamon S, et al. (2006) SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus. Molecular Genetics and Genomics 276(5): 436-449.
    • (2006) Molecular Genetics and Genomics , vol.276 , Issue.5 , pp. 436-449
    • Poncet, V.1    Rondeau, M.2    Tranchant, C.3    Cayrel, A.4    Hamon, S.5
  • 27
    • 0034090835 scopus 로고    scopus 로고
    • Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.)
    • Cho YG, Ishii T, Temnykh S, Chen X, Lipovich L, et al. (2000) Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). Theoretical and Applied Genetics 100(5): 713-722.
    • (2000) Theoretical and Applied Genetics , vol.100 , Issue.5 , pp. 713-722
    • Cho, Y.G.1    Ishii, T.2    Temnykh, S.3    Chen, X.4    Lipovich, L.5
  • 28
    • 80955178327 scopus 로고    scopus 로고
    • Development and characterization of SSR markers in Chinese jujube (Ziziphus jujuba Mill.) and its related species
    • Ma Q, Wang G, Liang L (2011) Development and characterization of SSR markers in Chinese jujube (Ziziphus jujuba Mill.) and its related species. Scientia Horticulturae 129(4): 597-602.
    • (2011) Scientia Horticulturae , vol.129 , Issue.4 , pp. 597-602
    • Ma, Q.1    Wang, G.2    Liang, L.3
  • 29
    • 84903123826 scopus 로고    scopus 로고
    • Isolation and Characterization of Microsatellite Markers and Analysis of Genetic Diversity in Chinese Jujube (Ziziphus jujuba Mill.)
    • doi:10.1371/journal.pone.0099842
    • Wang S, Liu Y, Ma L, Liu H, Tang Y, et al. (2014) Isolation and Characterization of Microsatellite Markers and Analysis of Genetic Diversity in Chinese Jujube (Ziziphus jujuba Mill.). PLoS ONE 9(6): e99842. doi:10.1371/journal.pone.0099842
    • (2014) PLoS ONE , vol.9 , Issue.6 , pp. e99842
    • Wang, S.1    Liu, Y.2    Ma, L.3    Liu, H.4    Tang, Y.5
  • 30
    • 84882276750 scopus 로고    scopus 로고
    • Development and characterization of microsatellite markers for sour jujube (Ziziphus jujuba var. spinosa)
    • Zhang C, Yin X, Li X, Huang J, Wang C, et al. (2013) Development and characterization of microsatellite markers for sour jujube (Ziziphus jujuba var. spinosa). Indian Journal of Genetics and Plant Breeding 73(3): 338-341.
    • (2013) Indian Journal of Genetics and Plant Breeding , vol.73 , Issue.3 , pp. 338-341
    • Zhang, C.1    Yin, X.2    Li, X.3    Huang, J.4    Wang, C.5
  • 31
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - The next generation
    • Metzker ML(2010) Sequencing technologies-the next generation. Nature Reviews Genetics 11(1): 31-46.
    • (2010) Nature Reviews Genetics , vol.11 , Issue.1 , pp. 31-46
    • Metzker, M.L.1
  • 32
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • Morozova O, Marra MA (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics 92(5): 255-264.
    • (2008) Genomics , vol.92 , Issue.5 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 33
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis ER (2008) The impact of next-generation sequencing technology on genetics. Trends in genetics 24(3): 133-141.
    • (2008) Trends in Genetics , vol.24 , Issue.3 , pp. 133-141
    • Mardis, E.R.1
  • 34
    • 77954450225 scopus 로고    scopus 로고
    • De novo characterization of a whitefly transcriptome and analysis of its gene expression during development
    • Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, et al. (2010) De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 11(1): 400.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 400
    • Wang, X.W.1    Luan, J.B.2    Li, J.M.3    Bao, Y.Y.4    Zhang, C.X.5
  • 35
    • 79952045110 scopus 로고    scopus 로고
    • Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
    • Shi CY, Yang H, Wei CL, Yu O, Zhang ZZ, et al. (2011) Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC genomics 12(1): 131.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 131
    • Shi, C.Y.1    Yang, H.2    Wei, C.L.3    Yu, O.4    Zhang, Z.Z.5
  • 36
    • 84856882867 scopus 로고    scopus 로고
    • Assembly, gene annotation and marker development using 454 floral transcriptome sequences in Ziziphus celata (Rhamnaceae), a highly endangered, Florida endemic plant
    • Edwards CE, Parchman TL, Weekley CW (2012) Assembly, gene annotation and marker development using 454 floral transcriptome sequences in Ziziphus celata (Rhamnaceae), a highly endangered, Florida endemic plant. DNA research 19(1): 1-9.
    • (2012) DNA Research , vol.19 , Issue.1 , pp. 1-9
    • Edwards, C.E.1    Parchman, T.L.2    Weekley, C.W.3
  • 37
    • 84863004479 scopus 로고    scopus 로고
    • Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration
    • Nyberg KG, Conte MA, Kostyun JL, Forde A, Bely AE (2012) Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration. BMC genomics 13(1): 287.
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 287
    • Nyberg, K.G.1    Conte, M.A.2    Kostyun, J.L.3    Forde, A.4    Bely, A.E.5
  • 38
    • 66749182204 scopus 로고    scopus 로고
    • Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
    • Meyer E, Aglyamova G, Wang S, Buchanan-Carter J, Abrego D, et al. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC genomics 10(1): 219.
    • (2009) BMC Genomics , vol.10 , Issue.1 , pp. 219
    • Meyer, E.1    Aglyamova, G.2    Wang, S.3    Buchanan-Carter, J.4    Abrego, D.5
  • 39
    • 80052611733 scopus 로고    scopus 로고
    • RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
    • Xia Z, Xu H, Zhai J, Li D, Luo H, et al. (2011) RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis. Plant molecular biology 77(3): 299-308.
    • (2011) Plant Molecular Biology , vol.77 , Issue.3 , pp. 299-308
    • Xia, Z.1    Xu, H.2    Zhai, J.3    Li, D.4    Luo, H.5
  • 40
    • 77951894310 scopus 로고    scopus 로고
    • Transcriptome sequencing in an ecologically important tree species: Assembly, annotation, and marker discovery
    • Parchman T, Geist K, Grahnen J, Benkman C, Buerkle CA (2010) Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC genomics 11(1): 180.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 180
    • Parchman, T.1    Geist, K.2    Grahnen, J.3    Benkman, C.4    Buerkle, C.A.5
  • 41
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, et al. (2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular ecology 17(7): 1636-1647.
    • (2008) Molecular Ecology , vol.17 , Issue.7 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5
  • 42
    • 48249125753 scopus 로고    scopus 로고
    • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    • Novaes E, Drost DR, Farmerie WG, Pappas GJ, Grattapaglia D, et al. (2008) High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC genomics 9(1): 312.
    • (2008) BMC Genomics , vol.9 , Issue.1 , pp. 312
    • Novaes, E.1    Drost, D.R.2    Farmerie, W.G.3    Pappas, G.J.4    Grattapaglia, D.5
  • 43
    • 84865052748 scopus 로고    scopus 로고
    • De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)
    • Zhang XM, Zhao L, Larson-Rabin Z, Li DZ, Guo ZH (2012) De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). PloS one 7(8): e42082.
    • (2012) PloS One , vol.7 , Issue.8 , pp. e42082
    • Zhang, X.M.1    Zhao, L.2    Larson-Rabin, Z.3    Li, D.Z.4    Guo, Z.H.5
  • 44
    • 77953600890 scopus 로고    scopus 로고
    • Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    • Guo S, Zheng Y, Joung J-G, Liu S, Zhang Z, et al. (2010) Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC genomics 11(1): 384.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 384
    • Guo, S.1    Zheng, Y.2    Joung, J.-G.3    Liu, S.4    Zhang, Z.5
  • 45
    • 84862649983 scopus 로고    scopus 로고
    • Transcriptome analysis of the oriental river prawn, Macrobrachium nipponense using 454 pyrosequencing for discovery of genes and markers
    • Ma K, Qiu G, Feng J, Li J (2012) Transcriptome analysis of the oriental river prawn, Macrobrachium nipponense using 454 pyrosequencing for discovery of genes and markers. PloS one 7(6): e39727.
    • (2012) PloS One , vol.7 , Issue.6 , pp. e39727
    • Ma, K.1    Qiu, G.2    Feng, J.3    Li, J.4
  • 46
    • 84855738015 scopus 로고    scopus 로고
    • Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq
    • Feng C, Chen M, Xu C-j, Bai L, Yin X-r, et al. (2012) Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. BMC genomics 13(1): 19.
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 19
    • Feng, C.1    Chen, M.2    Xu, C.-J.3    Bai, L.4    Yin, X.-R.5
  • 47
    • 84882253104 scopus 로고    scopus 로고
    • De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading
    • Li C, Wang Y, Huang X, Li J, Wang H, et al. (2013) De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading. BMC genomics 14(1): 552.
    • (2013) BMC Genomics , vol.14 , Issue.1 , pp. 552
    • Li, C.1    Wang, Y.2    Huang, X.3    Li, J.4    Wang, H.5
  • 48
    • 84876057339 scopus 로고    scopus 로고
    • De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing
    • Wang R, Xu S, Jiang Y, Jiang J, Li X, et al. (2013) De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing. PloS one 8(4): e60449.
    • (2013) PloS One , vol.8 , Issue.4 , pp. e60449
    • Wang, R.1    Xu, S.2    Jiang, Y.3    Jiang, J.4    Li, X.5
  • 49
    • 84861170775 scopus 로고    scopus 로고
    • De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)
    • Li D, Deng Z, Qin B, Liu X, Men Z (2012) De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). BMC genomics 13(1): 192.
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 192
    • Li, D.1    Deng, Z.2    Qin, B.3    Liu, X.4    Men, Z.5
  • 50
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic acids research 28: 27-30.
    • (2000) Nucleic Acids Research , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 51
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5
  • 52
    • 84879272520 scopus 로고
    • Fruit vitamin C content changes of different jujube cultivars
    • in Chinese
    • Bi P, Kang Z, Lai F, Lu X (1990) Fruit vitamin C content changes of different jujube cultivars. Shanxi Fruit 4:24-25 (in Chinese).
    • (1990) Shanxi Fruit , vol.4 , pp. 24-25
    • Bi, P.1    Kang, Z.2    Lai, F.3    Lu, X.4
  • 53
    • 0032574983 scopus 로고    scopus 로고
    • The biosynthetic pathway of vitamin C in higher plants
    • Wheeler GL, Jones MA, Smirnoff N (1998) The biosynthetic pathway of vitamin C in higher plants. Nature 393: 365-369.
    • (1998) Nature , vol.393 , pp. 365-369
    • Wheeler, G.L.1    Jones, M.A.2    Smirnoff, N.3
  • 55
    • 0345701915 scopus 로고    scopus 로고
    • Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles
    • Wagner C, Sefkow M, Kopka J (2003) Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62: 887-900.
    • (2003) Phytochemistry , vol.62 , pp. 887-900
    • Wagner, C.1    Sefkow, M.2    Kopka, J.3
  • 56
    • 1642506227 scopus 로고    scopus 로고
    • myo-Inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis
    • Lorence A, Chevone BI, Mendes P, Nessler CL (2004) myo-Inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis. Plant Physiology 134: 1200-1205.
    • (2004) Plant Physiology , vol.134 , pp. 1200-1205
    • Lorence, A.1    Chevone, B.I.2    Mendes, P.3    Nessler, C.L.4
  • 57
    • 49749083995 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening
    • Crowhurst RN, Gleave AP, MacRae EA, Ampomah-Dwamena C, Atkinson RG, et al. (2008) Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC genomics 9: 351.
    • (2008) BMC Genomics , vol.9 , pp. 351
    • Crowhurst, R.N.1    Gleave, A.P.2    MacRae, E.A.3    Ampomah-Dwamena, C.4    Atkinson, R.G.5
  • 59
    • 84887591872 scopus 로고    scopus 로고
    • Novel enzymatic extraction and purification method for cyclic adenosine monophosphate (cAMP) from Ziziphus jujube
    • Wang CX, Gao XQ, Wang HK, Liu YH, Du LX, et al. (2013) Novel enzymatic extraction and purification method for cyclic adenosine monophosphate (cAMP) from Ziziphus jujube. Journal of Food, Agriculture & Environment 11(3-4): 469-474.
    • (2013) Journal of Food, Agriculture & Environment , vol.11 , Issue.3-4 , pp. 469-474
    • Wang, C.X.1    Gao, X.Q.2    Wang, H.K.3    Liu, Y.H.4    Du, L.X.5
  • 60
    • 33947711964 scopus 로고
    • Cyclic adenosine monophosphate in fruits of Zizyphus jujuba
    • Cyong JC, Hanabusa K (1980) Cyclic adenosine monophosphate in fruits of Zizyphus jujuba. Phytochemistry 19(12): 2747-2748.
    • (1980) Phytochemistry , vol.19 , Issue.12 , pp. 2747-2748
    • Cyong, J.C.1    Hanabusa, K.2
  • 61
    • 33947723445 scopus 로고
    • High-level of cyclic AMP in the jujube plum
    • Hanabusa K, Cyong J, Takahashi M (1981) High-level of cyclic AMP in the jujube plum. Planta medica 42(8): 380-384.
    • (1981) Planta Medica , vol.42 , Issue.8 , pp. 380-384
    • Hanabusa, K.1    Cyong, J.2    Takahashi, M.3
  • 62
    • 84906963349 scopus 로고
    • cAMP Contents of Zizyphus jujuba Mill. Zizyphus spinosus Hu. and Other Twelve Horticural Plants
    • Yonghui LMW (1991) cAMP Contents of Zizyphus jujuba Mill. Zizyphus spinosus Hu. and Other Twelve Horticural Plants. Journal of Agricultural University of Hebei 4: 004.
    • (1991) Journal of Agricultural University of Hebei , vol.4 , pp. 004
    • Yonghui, L.M.W.1
  • 64
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature biotechnology 28: 511-515.
    • (2010) Nature Biotechnology , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5
  • 65
    • 10744227034 scopus 로고    scopus 로고
    • Molecular cloning and functional analysis of a novel type of Bowman-Birk inhibitor gene family in rice
    • Qu LJ, Chen J, Liu M, Pan N, Okamoto H, et al. (2003) Molecular cloning and functional analysis of a novel type of Bowman-Birk inhibitor gene family in rice. Plant physiology 133: 560-570.
    • (2003) Plant Physiology , vol.133 , pp. 560-570
    • Qu, L.J.1    Chen, J.2    Liu, M.3    Pan, N.4    Okamoto, H.5
  • 66
    • 2342578126 scopus 로고    scopus 로고
    • Thaumatin-like proteins-a new family of pollen and fruit allergens
    • Breiteneder H (2004) Thaumatin-like proteins-a new family of pollen and fruit allergens. Allergy 59: 479-481.
    • (2004) Allergy , vol.59 , pp. 479-481
    • Breiteneder, H.1
  • 67
    • 67649085735 scopus 로고    scopus 로고
    • Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.)
    • Sharma RK, Bhardwaj P, Negi R, Mohapatra T, Ahuja PS (2009) Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.). BMC Plant Biology 9: 53.
    • (2009) BMC Plant Biology , vol.9 , pp. 53
    • Sharma, R.K.1    Bhardwaj, P.2    Negi, R.3    Mohapatra, T.4    Ahuja, P.S.5
  • 68
    • 84862825018 scopus 로고    scopus 로고
    • De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)
    • Zhang J, Liang S, Duan J, Wang J, Chen S, et al. (2012) De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.). BMC genomics 13: 90.
    • (2012) BMC Genomics , vol.13 , pp. 90
    • Zhang, J.1    Liang, S.2    Duan, J.3    Wang, J.4    Chen, S.5
  • 69
    • 77649112643 scopus 로고    scopus 로고
    • Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
    • Zeng S, Xiao G, Guo J, Fei Z, Xu Y, et al. (2010) Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim. BMC genomics 11: 94.
    • (2010) BMC Genomics , vol.11 , pp. 94
    • Zeng, S.1    Xiao, G.2    Guo, J.3    Fei, Z.4    Xu, Y.5
  • 70
    • 84893633147 scopus 로고    scopus 로고
    • Deep Sequencing-Based Analysis of the Cymbidium ensifolium Floral Transcriptome
    • Li X, Luo J, Yan T, Xiang L, Jin F, et al. (2013) Deep Sequencing-Based Analysis of the Cymbidium ensifolium Floral Transcriptome. PloS one 8: e85480.
    • (2013) PloS One , vol.8 , pp. e85480
    • Li, X.1    Luo, J.2    Yan, T.3    Xiang, L.4    Jin, F.5
  • 71
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n.(dG-dT)n polymorphisms
    • Weber JL (1990) Informativeness of human (dC-dA)n.(dG-dT)n polymorphisms. Genomics 7: 524-530.
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 74
    • 77954411025 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers
    • Li X, Shangguan L, Song C, Wang C, Gao Z, et al. (2010) Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers. BMC genetics 11: 66.
    • (2010) BMC Genetics , vol.11 , pp. 66
    • Li, X.1    Shangguan, L.2    Song, C.3    Wang, C.4    Gao, Z.5
  • 75
    • 84868493560 scopus 로고    scopus 로고
    • High-throughput novel microsatellite marker of faba bean via next generation sequencing
    • Yang T, Bao S-y, Ford R, Jia T-j, Guan J-p, et al. (2012) High-throughput novel microsatellite marker of faba bean via next generation sequencing. BMC genomics 13: 602.
    • (2012) BMC Genomics , vol.13 , pp. 602
    • Yang, T.1    Bao, S.-Y.2    Ford, R.3    Jia, T.-J.4    Guan, J.-P.5
  • 76
    • 79956266656 scopus 로고    scopus 로고
    • Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery
    • Kaur S, Cogan NO, Pembleton LW, Shinozuka M, Savin KW, et al. (2011) Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery. BMC genomics 12: 265.
    • (2011) BMC Genomics , vol.12 , pp. 265
    • Kaur, S.1    Cogan, N.O.2    Pembleton, L.W.3    Shinozuka, M.4    Savin, K.W.5
  • 77
    • 78651533840 scopus 로고    scopus 로고
    • Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea
    • [Cajanus cajan (L.) Millspaugh].
    • Dutta S, Kumawat G, Singh BP, Gupta DK, Singh S, et al. (2011) Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC plant biology 11: 17.
    • (2011) BMC Plant Biology , vol.11 , pp. 17
    • Dutta, S.1    Kumawat, G.2    Singh, B.P.3    Gupta, D.K.4    Singh, S.5
  • 79
    • 84880334767 scopus 로고    scopus 로고
    • Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae)
    • Zheng X, Pan C, Diao Y, You Y, Yang C, et al. (2013) Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae). BMC genomics 14: 490.
    • (2013) BMC Genomics , vol.14 , pp. 490
    • Zheng, X.1    Pan, C.2    Diao, Y.3    You, Y.4    Yang, C.5
  • 80
    • 84896721385 scopus 로고    scopus 로고
    • Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant (Camellia sinensis)
    • Tan LQ, Wang LY, Wei K, Zhang CC, Wu LY, et al. (2013) Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant (Camellia sinensis). PloS one 8: e81611.
    • (2013) PloS One , vol.8 , pp. e81611
    • Tan, L.Q.1    Wang, L.Y.2    Wei, K.3    Zhang, C.C.4    Wu, L.Y.5
  • 81
    • 58249113957 scopus 로고    scopus 로고
    • A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping
    • Cipriani G, Marrazzo MT, Di Gaspero G, Pfeiffer A, Morgante M, et al. (2008) A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping. BMC Plant Biol 8: 127.
    • (2008) BMC Plant Biol , vol.8 , pp. 127
    • Cipriani, G.1    Marrazzo, M.T.2    Di Gaspero, G.3    Pfeiffer, A.4    Morgante, M.5
  • 82
    • 0026780282 scopus 로고
    • Microsatellites for linkage analysis of genetic traits
    • Hearne CM, Ghosh S, Todd JA (1992) Microsatellites for linkage analysis of genetic traits. Trends in Genetics 8: 288-294.
    • (1992) Trends in Genetics , vol.8 , pp. 288-294
    • Hearne, C.M.1    Ghosh, S.2    Todd, J.A.3
  • 83
    • 0030775733 scopus 로고    scopus 로고
    • Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean
    • Diwan N, Cregan P (1997) Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theoretical and applied genetics 95: 723-733.
    • (1997) Theoretical and Applied Genetics , vol.95 , pp. 723-733
    • Diwan, N.1    Cregan, P.2
  • 85
    • 0030779258 scopus 로고    scopus 로고
    • Detection and quantitative characterization of artificial extra peaks following polymerase chain reaction amplification of 14 short tandem repeat systems used in forensic investigations
    • Meldgaard M MN (1997) Detection and quantitative characterization of artificial extra peaks following polymerase chain reaction amplification of 14 short tandem repeat systems used in forensic investigations. Electrophoresis 18: 1928-1935.
    • (1997) Electrophoresis , vol.18 , pp. 1928-1935
    • Meldgaard, M.M.N.1
  • 86
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature genetics 30: 194-200.
    • (2002) Nature Genetics , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 88
    • 0030015122 scopus 로고    scopus 로고
    • Microsatellite libraries enriched for several microsatellite sequences in plants
    • Edwards KJ BJ, Daly A, Jones C, Karp A (1996) Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques 20: 758-760.
    • (1996) Biotechniques , vol.20 , pp. 758-760
    • Edwards, K.J.B.J.1    Daly, A.2    Jones, C.3    Karp, A.4
  • 89
    • 0019302053 scopus 로고
    • Construction of genetic linkage map in man using restriction fragment length polymorphisms
    • Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
    • (1980) Am J Hum Genet , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 90
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray M, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic acids research 8: 4321-4326.
    • (1980) Nucleic Acids Research , vol.8 , pp. 4321-4326
    • Murray, M.1    Thompson, W.F.2
  • 91
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: the European molecular biology open software suite. Trends in genetics 16: 276-277.
    • (2000) Trends in Genetics , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3


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