De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  Li, Dejun ^a   Deng, Zhi ^a   Qin, Bi ^a   Liu, Xianghong ^a   Men, Zhonghua ^b  

^a INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^b BAOTOU TEACHERS COLLEGE   (China)

Author keywords

Bark; de novo assembly; EST SSR; Illumina paired end sequencing; Rubber tree; Transcriptome

Indexed keywords

TRANSCRIPTOME; MICROSATELLITE DNA;

AMINO ACID METABOLISM; AMINO ACID TRANSPORT; ARTICLE; BARK; BIOSYNTHESIS; CARBOHYDRATE METABOLISM; CARBOHYDRATE TRANSPORT; CELL CYCLE REGULATION; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; GENE MAPPING; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; HETEROZYGOSITY; HEVEA BRASILIENSIS; HIGH THROUGHPUT SEQUENCING; HOMOZYGOSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PROTEIN BINDING; PROTEIN DATABASE; PROTEIN PROCESSING; SIGNAL TRANSDUCTION; SIMPLE SEQUENCE REPEAT; UNINDEXED SEQUENCE; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETIC DATABASE; GENETIC MARKER; GENETICS; HEVEA; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE MOTIF; PLANT GENE; STANDARD;

HEVEA; HEVEA BRASILIENSIS;

BASE SEQUENCE; DATABASES, GENETIC; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC MARKERS; HEVEA; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE ANNOTATION; NUCLEOTIDE MOTIFS; PLANT BARK; REFERENCE STANDARDS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTOME;

EID: 84861170775     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-192     Document Type: Article

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