Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles

Phytochemistry

Volumn 62, Issue 6, 2003, Pages 887-900

  Wagner, Cornelia ^a   Sefkow, Michael ^b   Kopka, Joachim ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^b UNIVERSITY OF POTSDAM   (Germany)

Author keywords

Arabidopsis thaliana; Ascorbic acid; Brassicaceae; Caffeic acid; Caffeoylquinic acids; Chlorogenic acid; Galactonic acid; Glucaric acid; Gluconic acid; Gulonic acid; Metabolite profiling; Nicotiana tabacum; Quinic acid; Solanaceae; Solanum tuberosum

Indexed keywords

4 CAFFEOYLQUINIC ACID; 5 CAFFEOYLQUINIC ACID; ASCORBIC ACID; CAFFEIC ACID; CHLOROGENIC ACID; GALACTONIC ACID; GLUCONIC ACID; GULONIC ACID; LACTONE; QUINIC ACID; SACCHARIC ACID; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; BRASSICA; CHEMICAL STRUCTURE; CHROMATOGRAPHY; CLUSTER ANALYSIS; CONFORMATION; DATA BASE; GAS CHROMATOGRAPHY; GENOMICS; ISOMERISM; MASS SPECTROMETRY; METABOLOMICS; PLANT LEAF; PLANT METABOLISM; PLANT ROOT; POTATO; SIGNAL NOISE RATIO; TOBACCO;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICACEAE; NICOTIANA; NICOTIANA TABACUM; SOLANACEAE; SOLANUM; SOLANUM TUBEROSUM;

EID: 0345701915     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0031-9422(02)00703-3     Document Type: Article

References (27)

1. Baumert, A., Mock, H.-P., Schmidt, J., Herbers, K., Sonnewald, U., Strack, D., 2001. Patterns of phenylpropanoids in non-inoculated and potato virus Y-inoculated leaves of transgenic tobacco plants expressing yeast-derived invertase. Phytochemistry 56, 535-541.
2. Boros, L.G., Cascante, M., Lee, W.N.P., 2002. Metabolic profiling of cell growth and death in cancer: applications in drug discovery. Drug Discovery Today 7, 364-372.
3. Dalluge, J., Vreuls, R.J.J., Beens, J., Brinkman, U.A.T., 2002. Opimization and characterization of comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometric detection (GCxGC-TOF-MS). Journal of Separation Science 25, 201-214.
4. Duez, P., Kumps, A., Mardens, Y., 1996. GC-MS profiling of urinary organic acids evaluated as a quantitative method. Clinical Chemistry 42, 1609-1615.
5. Dyson, N., 1999. Peak distortion, data sampling errors and the integrator in the measurement of very narrow chromatographic peaks. Journal of Chromatography A 842, 321-340.
6. Fan, T.W.-M., Lane, A.N., Shenker, M., Bartley, J.P., Crowley, D., Higashi, R.M., 2001. Comprehensive chemical profiling of gramineous plant root exudates using high-resolution NMR and MS. Phytochemistry 57, 209-221.
7. Fiehn, O., 2002. Metabolomics - the link between genotypes and phenotypes. Plant Molecular Biology 48, 155-171.
8. Fiehn, O., Kopka, J., Dormann, P., Altmann, T., Trethewey, R.N., Willmitzer, L., 2000a. Metabolite profiling for plant functional genomics. Nature Biotechnology 18, 1157-1161.
9. Fiehn, O., Kopka, J., Trethewey, R.N., Willmitzer, L., 2000b. Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Analytical Chemistry 72, 3573-3580.
10. Frenzel, T., Miller, A., Engel, K.H., 2002. Metabolite profiling - a fractionation method for analysis of major and minor compounds in rice grains. Cereal Chemistry 79, 215-221.
11. Fuchs, C., Spiteller, G., 1996. Rapid and easy identification of isomers of coumaroyl- and caffeoyl-D-quinic acid by gas chromatography mass spectrometry. Journal of Mass Spectrometry 31, 602-608.
12. Griffin, J.L., Williams, H.J., Sang, E., Clarke, K., Rae, C., Nicholson, J.K., 2001. Metabolic profiling of genetic disorders: a multitissue H-1 nuclear magnetic resonance spectroscopic and pattern recognition study into dystrophic disorders. Analytical Biochemistry 293, 16-21.
13. Griffiths, D.W., Bain, H., 1997. Photo-induced changes in the concentrations of individual chlorogenic acid isomers in potato (Solanum tuberosum) tubers and their complexation with ferric ions. Potato Research 40, 307-315.
14. Hirsch, R., Ternes, T.A., Bobeldijk, I., Week, R.A., 2001. Determination of environmentally relevant compounds using fast GC/TOF-MS. Chimia 55, 19-22.
15. Huhman, D.V., Sumner, L.W., 2002. Metabolic profiling of saponins in Medicago sativa and Medicago trunculata using HPLC coupled to an electrospray ion-trap mass spectrometer. Phytochemistry 59, 347-360.
16. Koeppe, D.E., Rohrbaugh, L.M., Wender, S.H., 1969. The effect of varying u.v. intensities on the concentration of scopolin and caffeoylquinic acids in tobacco and sunflower. Phytochemistry 8, 889-896.
17. Kuhara, T., 2001. Diagnosis of inborn errors of metabolism using filter paper urine, urease treatment, isotope dilution and gas chromatography-mass spectrometry. Journal of Chromatography B 758, 3-25.
18. Matsumoto, I., Kuhara, T., 1996. A new chemical diagnostic method for inborn errors of metabolism by mass spectrometry - rapid, practical, and simultaneous urinary metabolites analysis. Mass Spectrometry Reviews 15, 43-57.
19. Percival, G.C., Baird, L., 2000. Influence of storage upon lightinduced chlorogenic acid accumulation in potato tubers (Solanum tuberosum L.). Journal of Agricultural and Food Chemistry 48, 2476-2482.
20. Sefkow, M., 2001. First efficient synthesis of chlorogenic acid. European Journal of Organic Chemistry 6, 1137-1141.
21. Sefkow, M., Kelling, A., Schilde, U., 2001. First efficient syntheses of 1-, 4-, and 5-caffeoylquinic acid. European Journal of Organic Chemistry 14, 2735-2742.
22. Roessner, U., Wagner, C., Kopka, J., Trethewey, R.N., Willmitzer, L., 2000. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23, 131-142.
23. Roessner, U., Luedemann, A., Brust, D., Fiehn, O., Linke, T., Willmitzer, L., Fernie, A.R., 2001a. Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13, 11-29.
24. Roessner, U., Willmitzer, L., Fernie, A.R., 2001b. High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies. Plant Physiology 127, 749-764.
25. van Deursen, M.M., Beens, J., Janssen, H.-G., Leclercq, P.A., Cramers, C.A., 2000. Evaluation of time-of-flight mass spectrometric detection for fast gas chromatography. Journal of Chromatography A 878, 205-213.
26. Veriotti, T., Sacks, R., 2000. High speed GC/MS of gasoline-range hydrocarbon compounds using a pressure-tuneable column ensemble and time-of-flight detection. Analytical Chemistry 72, 3063-3069.
27. Veriotti, T., Sacks, R., 2001. High-speed GC and GC/ time-of-flight MS of lemon and lime oil samples. Analytical Chemistry 73, 4395-4402.