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Volumn 13, Issue 1, 2012, Pages

De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)

Author keywords

[No Author keywords available]

Indexed keywords

ARACHIS OIL; TRANSCRIPTOME; MICROSATELLITE DNA;

EID: 84862825018     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-90     Document Type: Article
Times cited : (213)

References (34)
  • 1
    • 77952930945 scopus 로고    scopus 로고
    • Peanuts, Peanut Oil, and Fat Free Peanut Flour Reduced Cardiovascular Disease Risk Factors and the Development of Atherosclerosis in Syrian Golden Hamsters
    • 10.1111/j.1750-3841.2010.01569.x, 20546405
    • Stephens AM, Dean LL, Davis JP, Osborne JA, Sanders TH. Peanuts, Peanut Oil, and Fat Free Peanut Flour Reduced Cardiovascular Disease Risk Factors and the Development of Atherosclerosis in Syrian Golden Hamsters. J Food Sci 2010, 75:H116-H122. 10.1111/j.1750-3841.2010.01569.x, 20546405.
    • (2010) J Food Sci , vol.75
    • Stephens, A.M.1    Dean, L.L.2    Davis, J.P.3    Osborne, J.A.4    Sanders, T.H.5
  • 3
    • 0036714914 scopus 로고    scopus 로고
    • Effects on the human serum lipoprotein profile of beta-glucan, soy protein and isoflavones, plant sterols and stanols, garlic and tocotrienols
    • Kerckhoffs DA, Brouns F, Hornstra G, Mensink RP. Effects on the human serum lipoprotein profile of beta-glucan, soy protein and isoflavones, plant sterols and stanols, garlic and tocotrienols. J Nutr 2002, 132:2494-2505.
    • (2002) J Nutr , vol.132 , pp. 2494-2505
    • Kerckhoffs, D.A.1    Brouns, F.2    Hornstra, G.3    Mensink, R.P.4
  • 5
    • 84862826541 scopus 로고
    • Simply analysis of the situation and countermeasures of peanut production in China
    • Ge SR, Sui QW, Yu SL. Simply analysis of the situation and countermeasures of peanut production in China. J Peanut Sci 1993, 4:3-6.
    • (1993) J Peanut Sci , vol.4 , pp. 3-6
    • Ge, S.R.1    Sui, Q.W.2    Yu, S.L.3
  • 6
    • 72649085207 scopus 로고    scopus 로고
    • Some nutritional characteristics of kernel and oil of peanut (Arachis hypogaea L.)
    • 10.5650/jos.59.1, 20032593
    • Ozcan MM. Some nutritional characteristics of kernel and oil of peanut (Arachis hypogaea L.). J Oleo Sci 2010, 59:1-5. 10.5650/jos.59.1, 20032593.
    • (2010) J Oleo Sci , vol.59 , pp. 1-5
    • Ozcan, M.M.1
  • 7
    • 0026654541 scopus 로고
    • A possible protective effect of nut consumption on risk of coronary heart disease. The Adventist Health Study
    • 10.1001/archinte.1992.00400190054010, 1627021
    • Fraser GE, Sabate J, Beeson WL, Strahan TM. A possible protective effect of nut consumption on risk of coronary heart disease. The Adventist Health Study. Arch Intern Med 1992, 152:1416-1424. 10.1001/archinte.1992.00400190054010, 1627021.
    • (1992) Arch Intern Med , vol.152 , pp. 1416-1424
    • Fraser, G.E.1    Sabate, J.2    Beeson, W.L.3    Strahan, T.M.4
  • 8
    • 78650095218 scopus 로고    scopus 로고
    • EST sequencing and gene expression profiling of cultivated peanut (Arachis hypogaea L.)
    • 10.1139/G10-074, 20962890
    • Bi YP, Liu W, Xia H, Su L, Zhao CZ, Wan SB, Wang XJ. EST sequencing and gene expression profiling of cultivated peanut (Arachis hypogaea L.). Genome 2010, 53:832-839. 10.1139/G10-074, 20962890.
    • (2010) Genome , vol.53 , pp. 832-839
    • Bi, Y.P.1    Liu, W.2    Xia, H.3    Su, L.4    Zhao, C.Z.5    Wan, S.B.6    Wang, X.J.7
  • 9
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nature Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 10
    • 78650502725 scopus 로고    scopus 로고
    • De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
    • 10.1186/1471-2164-11-726, 3016421, 21182800
    • Wang Z, Fang B, Chen J, Zhang X, Luo Z, Huang L, Chen X, Li Y. De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas). BMC Genomics 2010, 11:726. 10.1186/1471-2164-11-726, 3016421, 21182800.
    • (2010) BMC Genomics , vol.11 , pp. 726
    • Wang, Z.1    Fang, B.2    Chen, J.3    Zhang, X.4    Luo, Z.5    Huang, L.6    Chen, X.7    Li, Y.8
  • 11
    • 80052825742 scopus 로고    scopus 로고
    • Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers
    • 10.1186/1471-2164-12-451, 3184296, 21929789
    • Wei W, Qi X, Wang L, Zhang Y, Hua W, Li D, Lv H, Zhang X. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC Genomics 2011, 12:451. 10.1186/1471-2164-12-451, 3184296, 21929789.
    • (2011) BMC Genomics , vol.12 , pp. 451
    • Wei, W.1    Qi, X.2    Wang, L.3    Zhang, Y.4    Hua, W.5    Li, D.6    Lv, H.7    Zhang, X.8
  • 12
    • 77956277181 scopus 로고    scopus 로고
    • Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
    • 10.1101/gr.106120.110, 2928502, 20627892
    • Lu T, Lu G, Fan D, Zhu C, Li W, Zhao Q, Feng Q, Zhao Y, Guo Y, Huang X, et al. Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res 2010, 20:1238-1249. 10.1101/gr.106120.110, 2928502, 20627892.
    • (2010) Genome Res , vol.20 , pp. 1238-1249
    • Lu, T.1    Lu, G.2    Fan, D.3    Zhu, C.4    Li, W.5    Zhao, Q.6    Feng, Q.7    Zhao, Y.8    Guo, Y.9    Huang, X.10
  • 14
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • 10.1126/science.1158441, 2951732, 18451266
    • Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349. 10.1126/science.1158441, 2951732, 18451266.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 15
    • 46249096804 scopus 로고    scopus 로고
    • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    • 10.1038/nature07002, 18488015
    • Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bahler J. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008, 453:1239-1243. 10.1038/nature07002, 18488015.
    • (2008) Nature , vol.453 , pp. 1239-1243
    • Wilhelm, B.T.1    Marguerat, S.2    Watt, S.3    Schubert, F.4    Wood, V.5    Goodhead, I.6    Penkett, C.J.7    Rogers, J.8    Bahler, J.9
  • 17
    • 77950545365 scopus 로고    scopus 로고
    • Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq
    • 10.1104/pp.109.149716, 2850006, 20118272
    • Zenoni S, Ferrarini A, Giacomelli E, Xumerle L, Fasoli M, Malerba G, Bellin D, Pezzotti M, Delledonne M. Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq. Plant Physiology 2010, 152:1787-1795. 10.1104/pp.109.149716, 2850006, 20118272.
    • (2010) Plant Physiology , vol.152 , pp. 1787-1795
    • Zenoni, S.1    Ferrarini, A.2    Giacomelli, E.3    Xumerle, L.4    Fasoli, M.5    Malerba, G.6    Bellin, D.7    Pezzotti, M.8    Delledonne, M.9
  • 20
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • 10.1101/gr.079558.108, 2527709, 18550803
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008, 18:1509-1517. 10.1101/gr.079558.108, 2527709, 18550803.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 21
    • 63849091245 scopus 로고    scopus 로고
    • Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
    • 10.1101/gr.074906.107, 19339662
    • Fullwood MJ, Wei CL, Liu ET, Ruan Y. Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. Genome Res 2009, 19:521-532. 10.1101/gr.074906.107, 19339662.
    • (2009) Genome Res , vol.19 , pp. 521-532
    • Fullwood, M.J.1    Wei, C.L.2    Liu, E.T.3    Ruan, Y.4
  • 22
    • 38049091067 scopus 로고    scopus 로고
    • Gene expression profiling by massively parallel sequencing
    • 2134766, 18032722
    • Torres TT, Metta M, Ottenwalder B, Schlotterer C. Gene expression profiling by massively parallel sequencing. Genome Res 2008, 18:172-177. 2134766, 18032722.
    • (2008) Genome Res , vol.18 , pp. 172-177
    • Torres, T.T.1    Metta, M.2    Ottenwalder, B.3    Schlotterer, C.4
  • 23
    • 68749107979 scopus 로고    scopus 로고
    • Deep sequencing of the zebrafish transcriptome response to mycobacterium infection
    • 10.1016/j.molimm.2009.07.002, 19631987
    • Hegedus Z, Zakrzewska A, Agoston VC, Ordas A, Racz P, Mink M, Spaink HP, Meijer AH. Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Mol Immunol 2009, 46:2918-2930. 10.1016/j.molimm.2009.07.002, 19631987.
    • (2009) Mol Immunol , vol.46 , pp. 2918-2930
    • Hegedus, Z.1    Zakrzewska, A.2    Agoston, V.C.3    Ordas, A.4    Racz, P.5    Mink, M.6    Spaink, H.P.7    Meijer, A.H.8
  • 24
    • 77953125691 scopus 로고    scopus 로고
    • Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing
    • 10.1186/1471-2164-11-362, 2896379, 20529341
    • Clark MS, Thorne MA, Vieira FA, Cardoso JC, Power DM, Peck LS. Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing. BMC Genomics 2010, 11:362. 10.1186/1471-2164-11-362, 2896379, 20529341.
    • (2010) BMC Genomics , vol.11 , pp. 362
    • Clark, M.S.1    Thorne, M.A.2    Vieira, F.A.3    Cardoso, J.C.4    Power, D.M.5    Peck, L.S.6
  • 25
    • 79960892661 scopus 로고    scopus 로고
    • De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
    • 10.1186/1471-2164-12-389, 3224100, 21810238
    • Iorizzo M, Senalik DA, Grzebelus D, Bowman M, Cavagnaro PF, Matvienko M, Ashrafi H, Van Deynze A, Simon PW. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. BMC Genomics 2011, 12:389. 10.1186/1471-2164-12-389, 3224100, 21810238.
    • (2011) BMC Genomics , vol.12 , pp. 389
    • Iorizzo, M.1    Senalik, D.A.2    Grzebelus, D.3    Bowman, M.4    Cavagnaro, P.F.5    Matvienko, M.6    Ashrafi, H.7    Van Deynze, A.8    Simon, P.W.9
  • 26
    • 74549123642 scopus 로고    scopus 로고
    • The genetic map of Artemisia annua L. identifies loci affecting yield of the antimalarial drug artemisinin
    • 10.1126/science.1182612, 20075252
    • Graham IA, Besser K, Blumer S, Branigan CA, Czechowski T, Elias L, Guterman I, Harvey D, Isaac PG, Khan AM, et al. The genetic map of Artemisia annua L. identifies loci affecting yield of the antimalarial drug artemisinin. Science 2010, 327:328-331. 10.1126/science.1182612, 20075252.
    • (2010) Science , vol.327 , pp. 328-331
    • Graham, I.A.1    Besser, K.2    Blumer, S.3    Branigan, C.A.4    Czechowski, T.5    Elias, L.6    Guterman, I.7    Harvey, D.8    Isaac, P.G.9    Khan, A.M.10
  • 28
    • 84862793939 scopus 로고    scopus 로고
    • Simulation on Oil Accumulation Characteristics in Different High-Oil Peanut Varieties
    • Chen SL, Li YR, Xu GZ, Cheng ZS. Simulation on Oil Accumulation Characteristics in Different High-Oil Peanut Varieties. Acta Agronomica Sinica 2008, 34:142-149.
    • (2008) Acta Agronomica Sinica , vol.34 , pp. 142-149
    • Chen, S.L.1    Li, Y.R.2    Xu, G.Z.3    Cheng, Z.S.4
  • 29
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • 10.1101/gr.097261.109, 2813482, 20019144
    • Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010, 20:265-272. 10.1101/gr.097261.109, 2813482, 20019144.
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5    Shi, Z.6    Li, Y.7    Li, S.8    Shan, G.9    Kristiansen, K.10
  • 30
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 31
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 34
    • 65549148685 scopus 로고    scopus 로고
    • Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species
    • 10.1186/1471-2229-9-35, 2678122, 19309524
    • Liang X, Chen X, Hong Y, Liu H, Zhou G, Li S, Guo B. Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species. BMC Plant Biology 2009, 9:35. 10.1186/1471-2229-9-35, 2678122, 19309524.
    • (2009) BMC Plant Biology , vol.9 , pp. 35
    • Liang, X.1    Chen, X.2    Hong, Y.3    Liu, H.4    Zhou, G.5    Li, S.6    Guo, B.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.