Identification of genes associated with fruit ripening in Ziziphus jujuba using suppression subtractive hybridization approach

Acta Physiologiae Plantarum

Volumn 35, Issue 6, 2013, Pages 1997-2008

  Lin, Xinggu ^a,b   Yao, Lixin ^a,b   Li, Yingyue ^a,b   Wu, Rongling ^a,b   Pang, Xiaoming ^a,b  

^a BEIJING FORESTRY UNIVERSITY   (China)

^b BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

Chinese jujube; Fruit ripening; Fruit softening; Postharvest; SSH

Indexed keywords

ZIZIPHUS; ZIZIPHUS JUJUBA;

EID: 84878107785     PISSN: 01375881     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11738-013-1238-5     Document Type: Article

References (65)

1. Ageorges A, Fernandez L, Vialet S, Merdinoglu D, Terrier N, Romieu C (2006) Four specific isogenes of the anthocyanin metabolic pathway are systematically co-expressed with the red colour of grape berries. Plant Sci 170: 372-383.
2. Alam MJ, Rahman MH, Mamun MA, Ahmad I, Islam K (2006) Enzyme activities in relation to sugar accumulation in tomato. Proc Pak Acad Sci 43: 241.
3. Beck E, Ziegler P (1989) Biosynthesis and degradation of starch in higher plants. Annu Rev Plant Biol 40: 95-117.
4. Breton G, Vazquez-Tello A, Danyluk J, Sarhan F (2000) Two novel intrinsic annexins accumulate in wheat membranes in response to low temperature. Plant Cell Physiol 41(2): 177-184.
5. Brummell DA (2006) Cell wall disassembly in ripening fruit. Funct Plant Biol 33: 103-119.
6. Choi JW, Kimi GB, Huh YC, Kwon MR, Mok IG, Kim JW, Lee TS, Kim S, Im KH (2004) Cloning of genes differentially expressed during the initial stage of fruit development in melon (Cucumis melo cv. Reticulatus). Mol Cells 17: 237-241.
7. Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
8. Cronquist A (1988) The evolution and classification of flowering plants, 2nd edn. New York Botanical Garden, Bronx.
9. Datta R, Selvi MT, Seetharama N, Sharma R (1999) Stress-mediated enhancement of β-amylase activity in pearl millet and maize leaves is dependent on light. J Plant Physiol 154: 657-664.
10. Demkura PV, Ballaré CL (2012) UVR8 mediates UV-B-induced Arabidopsis defense responses against Botrytis cinerea by controlling sinapate accumulation. Mol Plant 5(3): 642-652.
11. Desai BB, Deshpande PB (1978) Effect of stage of maturity on some physical and biochemical constituents and enzyme activities of banana (Musa paradisiaca Linn.) fruits [India]. Mysore J Agr Sci 12.
12. Dreier W, Schnarrenberger C, Börner T (1995) Light- and stress-dependent enhancement of amylolytic activities in white and green barley leaves: β-amylases are stress-induced proteins. J Plant Physiol 145: 342-348.
13. Fong WP, Cheng CH, Tang WK (2006) Antiquitin, a relatively unexplored member in the superfamily of aldehyde dehydrogenases with diversified physiological functions. CMLS 63: 2881-2885.
14. Galla G, Barcaccia G, Ramina A, Collani S, Alagna F, Baldoni L, Cultrera NG, Martinelli F, Sebastiani L, Tonutti P (2009) Computational annotation of genes differentially expressed along olive fruit development. BMC Plant Biol 9: 128.
15. Gao C, Han B (2009) Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa). Gene 431: 86-94.
16. Garcia E, Lajolo FM (1988) Starch transformation during banana ripening: the amylase and glucosidase behavior. J Food Sci 53: 1181-1186.
17. Giovannoni JJ, DellaPenna D, Bennett AB, Fischer RL (1989) Expression of a chimeric polygalacturonase gene in transgenic rin (ripening inhibitor) tomato fruit results in polyuronide degradation but not fruit softening. Plant Cell 1: 53-63.
18. Grierson D, Woolhouse HW (1985) Gene expression in ripening tomato fruit. Crit Rev Plant Sci 3: 113-132.
19. Grierson D, Maunders MJ, Slater A, Ray J, Bird CR, Schuch W, Holdsworth MJ, Tucker GA, Knapp JE (1986) Gene expression during tomato ripening. Philos Trans R Soc Lond B Biol Sci 314: 399-410.
20. Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290: 2110-2113.
21. Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877.
22. Huber DJ (1983) The role of cell wall hydrolases in fruit softening. Hortic Rev 5: 169-219.
23. Ikegami A, Eguchi S, Kitajima A, Inoue K, Yonemori K (2007) Identification of genes involved in proanthocyanidin biosynthesis of persimmon (Diospyros kaki) fruit. Plant Sci 172: 1037-1047.
24. Jiang F, Chen JS, Miao Y, Krupinska K, Zheng XD (2009) Identification of differentially expressed genes from cherry tomato fruit (Lycopersicon esculentum) after application of the biological control yeast Cryptococcus laurentii. Postharvest Biol Technol 53: 131-137.
25. Kader AA (1997) Fruit maturity, ripening, and quality relationships. Acta Hortic 485: 203-208.
26. Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
27. Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 34: 354-357.
28. Kaplan F, Guy CL (2004) beta-Amylase induction and the protective role of maltose during temperature shock. Plant Physiol 135: 1674-1684.
29. Kesari R, Trivedi PK, Nath P (2007) Ethylene-induced ripening in banana evokes expression of defense and stress related genes in fruit tissue. Postharvest Biol Tec 46: 136-143.
30. Kim JM, To TK, Nishioka T, Seki M (2010) Chromatin regulation functions in plant abiotic stress responses. Plant Cell Environ 33: 604-611.
31. Kirch HH, Schlingensiepen S, Kotchoni S, Sunkar R, Bartels D (2005) Detailed expression analysis of selected genes of the aldehyde dehydrogenase (ALDH) gene superfamily in Arabidopsis thaliana. Plant Mol Biol 57: 315-332.
32. Klee HJ, Giovannoni JJ (2011) Genetics and control of tomato fruit ripening and quality attributes. Annu Rev Genet 45: 41-59.
33. Konopka-Postupolska D, Clark G, Goch G, Debski J, Floras K, Cantero A, Fijolek B, Roux S, Hennig J (2009) The role of annexin 1 in drought stress in Arabidopsis. Plant Physiol 150(3): 1394-1410.
34. Kou XH, Wang WS, Wu CE, Guo PY (2000) Studies on the relationship between senescence and membrane lipid peroxidation in jujube fruit. Acta Hortic Sin 27: 287-289.
35. Kramer MG, Redenbaugh K (1994) Commercialization of a tomato with an antisense polygalacturonase gene: the FLAVR SAVR™ tomato story. Euphytica 79: 293-297.
36. Labavitch JM (1981) Cell wall turnover in plant development. Annu Rev Plant Biol 32: 385-406.
37. Lashbrook CC, Giovannoni JJ, Hall BD, Fischer RL, Bennett AB (1998) Transgenic analysis of tomato endo-β-1, 4-glucanase gene function. Role of CEL1 in floral abscission. Plant J 13: 303-310.
38. Lee SM, Lee EJ, Yang EJ, Lee JE, Park AR, Song WH, Park OK (2004) Identification of annexins, calcium-dependent membrane binding proteins that mediate osmotic stress and abscisic acid signal transduction in Arabidopsis. Plant Cell 16: 1378-1391.
39. Li HW (2003) Studies on the senescence regulation and mechanism of ethanol accumulation of harvested "Brumal jujube". Ph. D Dissertation, China Agricultural University, Beijing. (in Chinese with English abstract).
40. Li HW, Feng SQ (2003) Changes of composition and activity of oxidative enzymes in the pericarp and mechanism of ethanol accumulation in 'Brumal jujube'. Trans CSAE 19: 165-168 (in Chinese with English abstract).
41. Li LT, Dan Y, Wang J (2003) The effect of high voltage static electric field and spermidine on the color change of 'Dongzao' jujube. Acta Hortic Sin 30: 201-203 (in Chinese with English abstract).
42. Li JW, Fan LP, Ding SD, Ding XL (2007) Nutritional composition of five cultivars of Chinese jujube. Food Chem 103: 454-460.
43. Licciardello C, Russo MP, Vale' G, Recupero RG (2008) Identification of differentially expressed genes in the flesh of blood and common oranges. Tree Genet Genomes 4: 315-331.
44. Lin L (2004) Studies on physiological responses of jujube fruit to different storage conditions and its postharvest storability. Institute of Botany, Chinese Academy of Sciences.
45. Liu XJ, Wang Q (2001) Study in humidicool storage and fresh-keeping technology on Chinese jujube Dongzao. J Shanxi Agric Sci 29: 73-76 (in Chinese with English abstract).
46. Liu MJ, Wang M (2009) Germplasm resources of Chinese jujube. China Forestry Publishing House, Beijing (in Chinese with English abstract).
47. Lloyd JR, Kossmann J, Ritte G (2005) Leaf starch degradation comes out of the shadows. Trends Plant Sci 10: 130-137.
48. Mahajan RT, Chopda MZ (2009) Phyto-pharmacology of Ziziphus jujuba Mill-a plant review. Phcog Rev 3(6): 320-329.
49. Mao WW, Kinsella JE (1981) Amylase activity in banana fruit: properties and changes in activity with ripening. J Food Sci 46: 1400-1403.
50. Mercado JA, Trainotti L, Jiménez-Bermúdez L, Santiago-Doménech N, Posé S, Donolli R, Barceló M, Casadoro G, Pliego-Alfaro F, Quesada MA (2010) Evaluation of the role of the endo-β-(1, 4)-glucanase gene FaEG3 in strawberry fruit softening. Postharvest Biol Tec 55: 8-14.
51. Niittylä T, Messerli G, Trevisan M, Chen J, Smith AM, Zeeman SC (2004) A previously unknown maltose transporter essential for starch degradation in leaves. Science 303: 87-89.
52. Page D, Marty I, Bouchet JP, Gouble B, Causse M (2008) Isolation of genes potentially related to fruit quality by subtractive selective hybridization in tomato. Postharvest Biol Tec 50: 117-124.
53. Parikka K, Tenkanen M (2009) Oxidation of methyl α-d-galactopyranoside by galactose oxidase: products formed and optimization of reaction conditions for production of aldehyde. Carbohydr Res 344: 14-20.
54. Parikka K, Leppanen AS, Pitkanen L, Reunanen M, Willfor S, Tenkanen M (2010) Oxidation of polysaccharides by galactose oxidase. J Agr Food Chem 58: 262-271.
55. Qu ZZ, Wang YH, Peng SQ, Guo YX (1993) China fruit records: jujuba volume. Chinese Forestry Press, Beijing (in Chinese with English abstract).
56. Rorat T, Sadowski J, Irzykowski W, Ziegler P, Daussant J (1995) Differential expression of two β-amylase genes of rye during seed development. Physiol Plantarum 94: 19-24.
57. Soltis DE, Soltis PS, Chase MW, Mort ME, Albach DC, Zanis M, Savolainen V, Hahn WH, Hoot SB, Fay MF, Axtell M, Swensen SM, Prince LM, Kress WJ, Nixon KC, Farris JS (2000) Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL, and atpB sequences. Bot J Linn Soc 133: 381-461.
58. Sophos NA, Vasiliou V (2003) Aldehyde dehydrogenase gene superfamily: the 2002 update. Chem Biol Interact 143-144: 5-22.
59. Tian SL, Zhou JY, Xue XM (2007) Activity changes of cell wall enzyme in the Chinese jujube fruit (Zizyphus Jujuba Mill cv. Dong) during softening and senescence. Food Sci 28: 220-222.
60. Tieman DM, Handa AK (1994) Reduction in pectin methylesterase activity modifies tissue integrity and cation levels in ripening tomato (Lycopersicon esculentum Mill.) fruits. Plant Physiol 106: 429-436.
61. van Damme EJ, Hu J, Barre A, Hause B, Baggerman G, Rouge P, Peumans WJ (2001) Purification, characterization, immunolocalization and structural analysis of the abundant cytoplasmic beta-amylase from Calystegia sepium (hedge bindweed) rhizomes. Eur J Biochem 268: 6263-6273.
62. Vicente AR, Saladié M, Rose JKC, Labavitch JM (2007) The linkage between cell wall metabolism and fruit softening: looking to the future. J Sci Food Agric 87: 1435-1448.
63. Wang GX (2003) The current storage situation and countermeasures of Dongzao. Storage Process 3: 1-2 (in Chinese with English abstract).
64. Weise SE, Weber AP, Sharkey TD (2004) Maltose is the major form of carbon exported from the chloroplast at night. Planta 218: 474-482.
65. Zhang YL, Guo H, Chen JP, Li JK (2005) Effects of juice of fructus Ziziphi jujubae on blood lipid level and body function in mice. Chin J Clin Rehabil 9(3): 247-249.