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Volumn 30, Issue 3 SUPPL., 2007, Pages 1009-1018

Frequency and distribution of microsatellites from ESTs of citrus

Author keywords

Citrus spp.; ESTs; In silico polymorphism; Microsatellites; Poncirus trifoliata

Indexed keywords

ARTICLE; CITEST; CITRUS FRUIT; COMPUTER MODEL; CONTROLLED STUDY; DINUCLEOTIDE REPEAT; EXPRESSED SEQUENCE TAG; GENE FREQUENCY; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC POLYMORPHISM; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PLANT GENETICS; POLYMERASE CHAIN REACTION; SEQUENCE DATABASE; SIMPLE SEQUENCE REPEAT; TRIFOLIATE ORANGE; TRINUCLEOTIDE REPEAT; UNINDEXED SEQUENCE;

EID: 38049171153     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/s1415-47572007000500029     Document Type: Article
Times cited : (42)

References (27)
  • 7
    • 0030943471 scopus 로고    scopus 로고
    • The Arabidopsis thaliana cDNA sequencing projects
    • Delseny M, Cooke R, Raynal M and Grellet F (1997) The Arabidopsis thaliana cDNA sequencing projects. FEBS Lett 405:129-132.
    • (1997) FEBS Lett , vol.405 , pp. 129-132
    • Delseny, M.1    Cooke, R.2    Raynal, M.3    Grellet, F.4
  • 8
    • 33645731206 scopus 로고    scopus 로고
    • Analysis of microsatellites in citrus unigenes
    • Dong J, Guang-Yan Z and Qi-Bing H (2006) Analysis of microsatellites in citrus unigenes. Acta Genet Sinica 33:345-353.
    • (2006) Acta Genet Sinica , vol.33 , pp. 345-353
    • Dong, J.1    Guang-Yan, Z.2    Qi-Bing, H.3
  • 9
    • 23944490730 scopus 로고    scopus 로고
    • Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa)
    • Folta KM, Staton M, Stewart PJ, Jung S, Bies DH, Jesdurai C and Main D (2005) Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa). BMC Plant Biol 5:12.
    • (2005) BMC Plant Biol , vol.5 , pp. 12
    • Folta, K.M.1    Staton, M.2    Stewart, P.J.3    Jung, S.4    Bies, D.H.5    Jesdurai, C.6    Main, D.7
  • 10
    • 0036344985 scopus 로고    scopus 로고
    • Identification and mapping of polymorphic SSRs markers from expressed gene sequences of barley and wheat
    • Holton TA, Christopher JT, McClure L, Harker N and Henry RJ (2002) Identification and mapping of polymorphic SSRs markers from expressed gene sequences of barley and wheat. Mol Breeding 9:63-71.
    • (2002) Mol Breeding , vol.9 , pp. 63-71
    • Holton, T.A.1    Christopher, J.T.2    McClure, L.3    Harker, N.4    Henry, R.J.5
  • 11
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X and Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res 9:868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 12
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • Kantety RV, La Rota M, Matthews DE and Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48:501-510.
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    La Rota, M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 13
    • 0033919542 scopus 로고    scopus 로고
    • Amino acid repeat patterns in protein sequences: Their diversity and structural-functional implications
    • Katti MV, Sami-Subbu R, Ranjekar PK and Gupta VS (2000) Amino acid repeat patterns in protein sequences: Their diversity and structural-functional implications. Protein Sci 9:1203-1209.
    • (2000) Protein Sci , vol.9 , pp. 1203-1209
    • Katti, M.V.1    Sami-Subbu, R.2    Ranjekar, P.K.3    Gupta, V.S.4
  • 14
    • 0028026319 scopus 로고
    • Enrichment of microsatellites from the Citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles
    • Kijas JMH, Fowler JCS, Garbett CA and Thomas MR (1994) Enrichment of microsatellites from the Citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques 16:657-662.
    • (1994) Biotechniques , vol.16 , pp. 657-662
    • Kijas, J.M.H.1    Fowler, J.C.S.2    Garbett, C.A.3    Thomas, M.R.4
  • 15
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG and Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325.
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 17
    • 0037646174 scopus 로고    scopus 로고
    • Evaluation of microsatellite markers in cultivars of sweet orange (Citrus sinensis Osbeck)
    • Novelli VM, Cristofani M and Machado MA (2000) Evaluation of microsatellite markers in cultivars of sweet orange (Citrus sinensis Osbeck). Acta Horticulturae 535:47-50.
    • (2000) Acta Horticulturae , vol.535 , pp. 47-50
    • Novelli, V.M.1    Cristofani, M.2    Machado, M.A.3
  • 18
    • 33645028907 scopus 로고    scopus 로고
    • Development and characterization of polymorphic simple sequence repeats (SSRs) in sweet orange (Citrus sinensis L. Osbeck)
    • Novelli VM, Cristofani M, Souza AA and Machado MA (2006) Development and characterization of polymorphic simple sequence repeats (SSRs) in sweet orange (Citrus sinensis L. Osbeck). Genet Mol Biol 29:90-96.
    • (2006) Genet Mol Biol , vol.29 , pp. 90-96
    • Novelli, V.M.1    Cristofani, M.2    Souza, A.A.3    Machado, M.A.4
  • 20
    • 0030920610 scopus 로고    scopus 로고
    • Sequence mapping by electronic PCR
    • Schuler GD (1997) Sequence mapping by electronic PCR. Genome Res 7:541-550.
    • (1997) Genome Res , vol.7 , pp. 541-550
    • Schuler, G.D.1
  • 21
    • 0002465646 scopus 로고    scopus 로고
    • Microsatellite derived from ESTs, and their comparison with those derived by other methods
    • Henry RJ eds, CABI Publishing, Oxon, pp
    • Scott KD (2001) Microsatellite derived from ESTs, and their comparison with those derived by other methods. In: Henry RJ (eds) Plant Genotyping: The DNA Fingerprinting of Plants. CABI Publishing, Oxon, pp 225-237.
    • (2001) Plant Genotyping: The DNA Fingerprinting of Plants , pp. 225-237
    • Scott, K.D.1
  • 23
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S and McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11: 1441-1452.
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 24
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney RK and Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422.
    • (2003) Theor Appl Genet , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 25
    • 0036428541 scopus 로고    scopus 로고
    • In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    • Letters
    • Varshney RK, Thiel T, Stein N, Langridge P and Graner A (2002) In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species. Cell & Mol Biol Letters 7:537-546.
    • (2002) Cell & Mol Biol , vol.7 , pp. 537-546
    • Varshney, R.K.1    Thiel, T.2    Stein, N.3    Langridge, P.4    Graner, A.5
  • 26
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n (dG-dT)n polymorphisms
    • Weber JL (1990) Informativeness of human (dC-dA)n (dG-dT)n polymorphisms. Genomics 7:524-530.
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 27
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • Zane L, Bargelloni L and Patarnello T (2002) Strategies for microsatellite isolation: A review. Mol Ecol 11:1-16.
    • (2002) Mol Ecol , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.