Satellyptus: Analysis and database of microsatellites from ESTs of Eucalyptus

Genetics and Molecular Biology

Volumn 28, Issue 3 SUPPL., 2005, Pages 589-600

  Ceresini, Paulo Cezar ^a,b   Silva, Cristina Lacerda Soares Petrarolha ^a,c   Missio, Robson Fernando ^b   Souza, Elaine Costa ^a   Fischer, Carlos Norberto ^b   Guillherme, Ivan Rizzo ^b   Gregorio, Ivo ^b   da Silva, Eloiza Helena Tajara ^b   Cicarelli, Regina Maria Barreto ^b   da Silva, Marco Túlio Alves ^b   Garcia, José Fernando ^b   Avelar, Gustavo Arbex ^b   Neto, Laercio Ribeiro Porto ^b   Marçon, André Ricardo ^b   Bacci Jr , Maurício ^b   Marini, Danyelle Cristine ^b  

^a ETH ZURICH   (Switzerland)

^b SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^c Curso de Medicina Veterinária   (Brazil)

Author keywords

Bioinformatics tool; Gene ontology; Genetic markers; Small sequence repeats; SSR

Indexed keywords

ADENINE; CYTOSINE; GUANINE; MICROSATELLITE DNA; THYMINE;

ARTICLE; BIOINFORMATICS; CODOMINANCE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; DATA BASE; EUCALYPTUS; EXPRESSED SEQUENCE TAG; FORESTS DATABASE; GENE LOCUS; GENE SEQUENCE; MICROSATELLITE MARKER; NONHUMAN; PLANT BREEDING; SEQUENCE HOMOLOGY; SIMPLE SEQUENCE REPEAT;

EUCALYPTUS;

EID: 30844442789     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/s1415-47572005000400014     Document Type: Article

References (23)

1. Brondani RPV, Brondani C and Grattapaglia D (2002) Towards a genus-wide reference linkage map for Eucalyptus based exclusively on highly informative microsatellite markers. Mol Genet Genomics 267:338-347.
2. Brondani RPV, Brondani C, Tarchini R and Grattapaglia D (1998) Development, characterization and mapping of microsatellite markers in Eucalyptus grandis and E. urophylla. Theor Appl Genet 97:816-827.
3. Cardle L, Ramsay L, Milbourne D, Macaulay M, Marshall D and Waugh R (2000) Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156:847-857.
4. Chen X, Temnykh S, Xu Y, Cho YG and McCouch SR (1997) Development of a microsatellite framework map providing genome wide coverage in rice (Oryza sativa L.) Theor Appl Genet 95:553-567.
5. Chin ECL (1996) Maize simple repetitive DNA Abundance and allele variation. Genome 39:866-873.
6. Cordeiro GM, Casu R, McIntyre CL, Manners JM and Henry RJ (2001) Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci 160:1115-1123.
7. Echt CS, Vendramim GG, Nelson CD and Marquardt P (1999) Microsatellite DNA as shared genetic markers among conifer species. Can J For Res 29:365-371.
8. Eujayl I, Sorrells ME, Baum M, Wolters P and Powell W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor Appl Genet 104:399-407.
9. Gion JM, Rech P, Grima-Pettenati J, Verhaegen D and Plomion C (2000) Mapping candidate genes in Eucalyptus with emphasis on lignification genes. Mol Breed 6:441-449.
10. Grattapaglia D (1999) Molecular breeding of Eucalyptus - State of the art, operational applications and technical challenges. In: Jain SM (ed) Molecular Markers and Genome Mapping in Woody Plants. v 1. Kluwer Academic Publishers, Dordrecht, pp 451-474.
11. Hackauf B and Wehling P (2002) Identification of microsatellite polymorphisms in an expressed portion of the rye genome. Plant Breed 121:17-25.
12. Huang X and Madan A (1999) CAP3: A DNA sequence assembling program. Genome Research 9:868-877.
13. Kirst M, Kirst EM, Gurgel G, Myburg AA and Whetten RW (2001) Gene discovery in Eucalyptus grandis xylem. Plant and Animal Genome IX (San Diego) Abstract P502.
14. Marques CM, Brondani RPV, Grattapaglia D and Sederoff R (2002) Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species. Theor Appl Genet 105:474-478.
15. Metzgar D, Bytof J and Wills C (2000) Selection against frame-shift mutations limits microsatellite expansion in coding DNA. Genome Res 10:72-80.
16. Morgante M and Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182.
17. Powell W, Machray GC and Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1:215-222.
18. Ramsay L, Macaulay M, Ivanissevich DS, MacLean K, Cardle L, Fuller J, Edwards KJ, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W and Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156:1997-2005.
19. Scott KD, Eggler P, Seaton G, Rossetto M, Ablett EM, Lee LS and Henry RJ (2000) Analysis of SSRs derived from grape ESTs. Theor Appl Genet 100:723-726.
20. Struss P and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theor Appl Genet 97:308-315.
21. Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N, Lipovich L, Cho YG and McCouch SR (2000) Mapping and genome organization of microsatellite sequences in rice (Oriza sativa L.) Theor Appl Genet 100:692-712.
22. Thiel T, Michalek W, Varshney RK and Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422.
23. n microsatellite sequences and description of a predicted MADS-box sequence isolated from common bean (Phaseolus vulgaris). Genet Molec Biol 26:337-342.