-
1
-
-
33751077282
-
Analysis of one million base pairs of Neanderthal DNA
-
Green R.E., et al. Analysis of one million base pairs of Neanderthal DNA. Nature 444 (2006) 330-336
-
(2006)
Nature
, vol.444
, pp. 330-336
-
-
Green, R.E.1
-
2
-
-
34249723655
-
Advanced sequencing technologies and their wider impact in microbiology
-
Hall N. Advanced sequencing technologies and their wider impact in microbiology. J. Exp. Biol. 210 (2007) 1518-1525
-
(2007)
J. Exp. Biol.
, vol.210
, pp. 1518-1525
-
-
Hall, N.1
-
3
-
-
0016800090
-
A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
-
Sanger F., and Coulson A.R. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J. Mol. Biol. 94 (1975) 441-448
-
(1975)
J. Mol. Biol.
, vol.94
, pp. 441-448
-
-
Sanger, F.1
Coulson, A.R.2
-
6
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander E.S., et al. Initial sequencing and analysis of the human genome. Nature 409 (2001) 860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
7
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431 (2004) 931-945
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
8
-
-
0035895505
-
The sequence of the human genome
-
Venter J.C., et al. The sequence of the human genome. Science 291 (2001) 1304-1351
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
-
9
-
-
35548973892
-
DNA sequencing: bench to bedside and beyond
-
Hutchison III C.A. DNA sequencing: bench to bedside and beyond. Nucleic Acids Res. 35 (2007) 6227-6237
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6227-6237
-
-
Hutchison III, C.A.1
-
10
-
-
28844463698
-
Emerging technologies in DNA sequencing
-
Metzker M.L. Emerging technologies in DNA sequencing. Genome Res. 15 (2005) 1767-1776
-
(2005)
Genome Res.
, vol.15
, pp. 1767-1776
-
-
Metzker, M.L.1
-
11
-
-
0023047540
-
Fluorescence detection in automated DNA sequence analysis
-
Smith L.M., et al. Fluorescence detection in automated DNA sequence analysis. Nature 321 (1986) 674-679
-
(1986)
Nature
, vol.321
, pp. 674-679
-
-
Smith, L.M.1
-
12
-
-
0023440258
-
A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides
-
Prober J.M., et al. A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides. Science 238 (1987) 336-341
-
(1987)
Science
, vol.238
, pp. 336-341
-
-
Prober, J.M.1
-
13
-
-
0001180921
-
Rapid separation and purification of oligonucleotides by high-performance capillary gel electrophoresis
-
Cohen A.S., Najarian D.R., Paulus A., Guttman A., Smith J.A., and Karger B.L. Rapid separation and purification of oligonucleotides by high-performance capillary gel electrophoresis. Proc. Natl. Acad. Sci. U. S. A. 85 (1988) 9660-9663
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 9660-9663
-
-
Cohen, A.S.1
Najarian, D.R.2
Paulus, A.3
Guttman, A.4
Smith, J.A.5
Karger, B.L.6
-
14
-
-
0027120996
-
DNA sequencing using capillary array electrophoresis
-
Huang X.C., Quesada M.A., and Mathies R.A. DNA sequencing using capillary array electrophoresis. Anal. Chem. 64 (1992) 2149-2154
-
(1992)
Anal. Chem.
, vol.64
, pp. 2149-2154
-
-
Huang, X.C.1
Quesada, M.A.2
Mathies, R.A.3
-
15
-
-
0027918078
-
DNA sequencing by capillary electrophoresis with replaceable linear polyacrylamide and laser-induced fluorescence detection
-
Ruiz-Martinez M.C., Berka J., Belenkii A., Foret F., Miller A.W., and Karger B.L. DNA sequencing by capillary electrophoresis with replaceable linear polyacrylamide and laser-induced fluorescence detection. Anal. Chem. 65 (1993) 2851-2858
-
(1993)
Anal. Chem.
, vol.65
, pp. 2851-2858
-
-
Ruiz-Martinez, M.C.1
Berka, J.2
Belenkii, A.3
Foret, F.4
Miller, A.W.5
Karger, B.L.6
-
16
-
-
0031952341
-
Separation of 4-color DNA sequencing extension products in noncovalently coated capillaries using low viscosity polymer solutions
-
Madabhushi R.S. Separation of 4-color DNA sequencing extension products in noncovalently coated capillaries using low viscosity polymer solutions. Electrophoresis 19 (1998) 224-230
-
(1998)
Electrophoresis
, vol.19
, pp. 224-230
-
-
Madabhushi, R.S.1
-
17
-
-
0033986374
-
DNA sequencing by capillary array electrophoresis and microfabricated array systems
-
Carrilho E. DNA sequencing by capillary array electrophoresis and microfabricated array systems. Electrophoresis 21 (2000) 55-65
-
(2000)
Electrophoresis
, vol.21
, pp. 55-65
-
-
Carrilho, E.1
-
18
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B., and Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
19
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437 (2005) 376-380
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
20
-
-
0031854986
-
Man-made cell-like compartments for molecular evolution
-
Tawfik D.S., and Griffiths A.D. Man-made cell-like compartments for molecular evolution. Nat. Biotechnol. 16 (1998) 652-656
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 652-656
-
-
Tawfik, D.S.1
Griffiths, A.D.2
-
21
-
-
0027478270
-
Solid phase DNA minisequencing by an enzymatic luminometric inorganic pyrophosphate detection assay
-
Nyren P., Pettersson B., and Uhlen M. Solid phase DNA minisequencing by an enzymatic luminometric inorganic pyrophosphate detection assay. Anal. Biochem. 208 (1993) 171-175
-
(1993)
Anal. Biochem.
, vol.208
, pp. 171-175
-
-
Nyren, P.1
Pettersson, B.2
Uhlen, M.3
-
22
-
-
0030298490
-
Real-time DNA sequencing using detection of pyrophosphate release
-
Ronaghi M., Karamohamed S., Pettersson B., Uhlen M., and Nyren P. Real-time DNA sequencing using detection of pyrophosphate release. Anal. Biochem. 242 (1996) 84-89
-
(1996)
Anal. Biochem.
, vol.242
, pp. 84-89
-
-
Ronaghi, M.1
Karamohamed, S.2
Pettersson, B.3
Uhlen, M.4
Nyren, P.5
-
24
-
-
21444456797
-
Toward the 1,000 dollars human genome
-
Bennett S.T., Barnes C., Cox A., Davies L., and Brown C. Toward the 1,000 dollars human genome. Pharmacogenomics 6 (2005) 373-382
-
(2005)
Pharmacogenomics
, vol.6
, pp. 373-382
-
-
Bennett, S.T.1
Barnes, C.2
Cox, A.3
Davies, L.4
Brown, C.5
-
25
-
-
33750953227
-
Whole-genome re-sequencing
-
Bentley D.R. Whole-genome re-sequencing. Curr. Opin. Genet. Dev. 16 (2006) 545-552
-
(2006)
Curr. Opin. Genet. Dev.
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
26
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
Shendure J., et al. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309 (2005) 1728-1732
-
(2005)
Science
, vol.309
, pp. 1728-1732
-
-
Shendure, J.1
-
27
-
-
37749047490
-
Sequence census methods for functional genomics
-
Wold B., and Myers R.M. Sequence census methods for functional genomics. Nat. Methods 5 (2008) 19-21
-
(2008)
Nat. Methods
, vol.5
, pp. 19-21
-
-
Wold, B.1
Myers, R.M.2
-
29
-
-
33749604245
-
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
-
Bainbridge M.N., et al. Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. BMC Genomics 7 (2006) 246
-
(2006)
BMC Genomics
, vol.7
, pp. 246
-
-
Bainbridge, M.N.1
-
30
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin R.D., et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 18 (2008) 610-621
-
(2008)
Genome Res.
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
-
32
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448 (2007) 553-560
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
33
-
-
34547630151
-
ChIP-seq: welcome to the new frontier
-
Mardis E.R. ChIP-seq: welcome to the new frontier. Nat. Methods 4 (2007) 613-614
-
(2007)
Nat. Methods
, vol.4
, pp. 613-614
-
-
Mardis, E.R.1
-
34
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson G., et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat. Methods 4 (2007) 651-657
-
(2007)
Nat. Methods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
-
35
-
-
34250193318
-
Molecular biology: site-seeing by sequencing
-
Fields S. Molecular biology: site-seeing by sequencing. Science 316 (2007) 1441-1442
-
(2007)
Science
, vol.316
, pp. 1441-1442
-
-
Fields, S.1
-
36
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson D.S., Mortazavi A., Myers R.M., and Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 316 (2007) 1497-1502
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
37
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A., et al. High-resolution profiling of histone methylations in the human genome. Cell 129 (2007) 823-837
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
-
38
-
-
1042272180
-
Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes
-
Gilmour D.S., and Lis J.T. Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes. Proc. Natl. Acad. Sci. U. S. A. 81 (1984) 4275-4279
-
(1984)
Proc. Natl. Acad. Sci. U. S. A.
, vol.81
, pp. 4275-4279
-
-
Gilmour, D.S.1
Lis, J.T.2
-
39
-
-
42149091620
-
From cytogenetics to next-generation sequencing technologies: advances in the detection of genome rearrangements in tumors
-
Morozova O., and Marra M.A. From cytogenetics to next-generation sequencing technologies: advances in the detection of genome rearrangements in tumors. Biochem. Cell Biol. 86 (2008) 81-91
-
(2008)
Biochem. Cell Biol.
, vol.86
, pp. 81-91
-
-
Morozova, O.1
Marra, M.A.2
-
40
-
-
22844451617
-
Fine-scale structural variation of the human genome
-
Tuzun E., et al. Fine-scale structural variation of the human genome. Nat. Genet. 37 (2005) 727-732
-
(2005)
Nat. Genet.
, vol.37
, pp. 727-732
-
-
Tuzun, E.1
-
41
-
-
33845212250
-
Anticipating the 1,000 dollar genome
-
Mardis E.R. Anticipating the 1,000 dollar genome. Genome Biol. 7 (2006) 112
-
(2006)
Genome Biol.
, vol.7
, pp. 112
-
-
Mardis, E.R.1
-
42
-
-
33746207763
-
Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes
-
Ng P., et al. Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes. Nucleic Acids Res. 34 (2006) e84
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Ng, P.1
-
43
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
Korbel J.O., et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 318 (2007) 420-426
-
(2007)
Science
, vol.318
, pp. 420-426
-
-
Korbel, J.O.1
-
44
-
-
34250334695
-
Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using paired-end ditags (PETs)
-
Ruan Y., et al. Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using paired-end ditags (PETs). Genome Res. 17 (2007) 828-838
-
(2007)
Genome Res.
, vol.17
, pp. 828-838
-
-
Ruan, Y.1
-
45
-
-
43149107930
-
Quality scores and SNP detection in sequencing-by-synthesis systems
-
Brockman W., et al. Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Res. 18 (2008) 763-770
-
(2008)
Genome Res.
, vol.18
, pp. 763-770
-
-
Brockman, W.1
-
46
-
-
33745926178
-
Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing
-
Thomas R.K., et al. Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing. Nat. Med. 12 (2006) 852-855
-
(2006)
Nat. Med.
, vol.12
, pp. 852-855
-
-
Thomas, R.K.1
-
47
-
-
0034083510
-
Taking a census of mRNA populations with microbeads
-
Tyagi S. Taking a census of mRNA populations with microbeads. Nat. Biotechnol. 18 (2000) 597-598
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 597-598
-
-
Tyagi, S.1
-
48
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
49
-
-
36248950699
-
Microarray analysis: basic strategies for successful experiments
-
Ness S.A. Microarray analysis: basic strategies for successful experiments. Mol. Biotechnol. 36 (2007) 205-219
-
(2007)
Mol. Biotechnol.
, vol.36
, pp. 205-219
-
-
Ness, S.A.1
-
50
-
-
0034130561
-
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
-
Brenner S., et al. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat. Biotechnol. 18 (2000) 630-634
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 630-634
-
-
Brenner, S.1
-
51
-
-
0030681260
-
The significance of digital gene expression profiles
-
Audic S., and Claverie J.M. The significance of digital gene expression profiles. Genome Res. 7 (1997) 986-995
-
(1997)
Genome Res.
, vol.7
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
52
-
-
33751001777
-
DeepSAGE-digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples
-
Nielsen K.L., Hogh A.L., and Emmersen J. DeepSAGE-digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. Nucleic Acids Res. 34 (2006) e133
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Nielsen, K.L.1
Hogh, A.L.2
Emmersen, J.3
-
53
-
-
33845657847
-
Understanding SAGE data
-
Wang S.M. Understanding SAGE data. Trends Genet. 23 (2007) 42-50
-
(2007)
Trends Genet.
, vol.23
, pp. 42-50
-
-
Wang, S.M.1
-
54
-
-
0036246030
-
Using the transcriptome to annotate the genome
-
Saha S., et al. Using the transcriptome to annotate the genome. Nat. Biotechnol. 20 (2002) 508-512
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 508-512
-
-
Saha, S.1
-
55
-
-
33751014338
-
Robust analysis of 5¢-transcript ends (5¢-RATE): a novel technique for transcriptome analysis and genome annotation
-
Gowda M., Li H., Alessi J., Chen F., Pratt R., and Wang G.L. Robust analysis of 5¢-transcript ends (5¢-RATE): a novel technique for transcriptome analysis and genome annotation. Nucleic Acids Res. 34 (2006) e126
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Gowda, M.1
Li, H.2
Alessi, J.3
Chen, F.4
Pratt, R.5
Wang, G.L.6
-
56
-
-
1642506317
-
Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis
-
Gowda M., Jantasuriyarat C., Dean R.A., and Wang G.L. Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis. Plant Physiol. 134 (2004) 890-897
-
(2004)
Plant Physiol.
, vol.134
, pp. 890-897
-
-
Gowda, M.1
Jantasuriyarat, C.2
Dean, R.A.3
Wang, G.L.4
-
57
-
-
20244377471
-
Functional annotation of a full-length Arabidopsis cDNA collection
-
Seki M., et al. Functional annotation of a full-length Arabidopsis cDNA collection. Science 296 (2002) 141-145
-
(2002)
Science
, vol.296
, pp. 141-145
-
-
Seki, M.1
-
58
-
-
16144364414
-
Generation and analysis of 280,000 human expressed sequence tags
-
Hillier L.D., et al. Generation and analysis of 280,000 human expressed sequence tags. Genome Res. 6 (1996) 807-828
-
(1996)
Genome Res.
, vol.6
, pp. 807-828
-
-
Hillier, L.D.1
-
59
-
-
11944257656
-
Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologues
-
McCombie W.R., et al. Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologues. Nat. Genet. 1 (1992) 124-131
-
(1992)
Nat. Genet.
, vol.1
, pp. 124-131
-
-
McCombie, W.R.1
-
60
-
-
2442679088
-
SAGE is far more sensitive than EST for detecting low-abundance transcripts
-
Sun M., Zhou G., Lee S., Chen J., Shi R.Z., and Wang S.M. SAGE is far more sensitive than EST for detecting low-abundance transcripts. BMC Genomics 5 (2004) 1
-
(2004)
BMC Genomics
, vol.5
, pp. 1
-
-
Sun, M.1
Zhou, G.2
Lee, S.3
Chen, J.4
Shi, R.Z.5
Wang, S.M.6
-
61
-
-
34250666153
-
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing
-
Weber A.P., Weber K.L., Carr K., Wilkerson C., and Ohlrogge J.B. Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol. 144 (2007) 32-42
-
(2007)
Plant Physiol.
, vol.144
, pp. 32-42
-
-
Weber, A.P.1
Weber, K.L.2
Carr, K.3
Wilkerson, C.4
Ohlrogge, J.B.5
-
62
-
-
35948958253
-
Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins
-
Jones-Rhoades M.W., Borevitz J.O., and Preuss D. Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins. PLoS Genet. 3 (2007) 1848-1861
-
(2007)
PLoS Genet.
, vol.3
, pp. 1848-1861
-
-
Jones-Rhoades, M.W.1
Borevitz, J.O.2
Preuss, D.3
-
63
-
-
33751017957
-
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology
-
Cheung F., Haas B.J., Goldberg S.M., May G.D., Xiao Y., and Town C.D. Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics 7 (2006) 272
-
(2006)
BMC Genomics
, vol.7
, pp. 272
-
-
Cheung, F.1
Haas, B.J.2
Goldberg, S.M.3
May, G.D.4
Xiao, Y.5
Town, C.D.6
-
64
-
-
35448940971
-
Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.)
-
Ohtsu K., et al. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant J. 52 (2007) 391-404
-
(2007)
Plant J.
, vol.52
, pp. 391-404
-
-
Ohtsu, K.1
-
65
-
-
35348932160
-
Wasp gene expression supports an evolutionary link between maternal behavior and eusociality
-
Toth A.L., et al. Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science 318 (2007) 441-444
-
(2007)
Science
, vol.318
, pp. 441-444
-
-
Toth, A.L.1
-
66
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
Vera J.C., et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol. Ecol. 17 (2008) 1636-1647
-
(2008)
Mol. Ecol.
, vol.17
, pp. 1636-1647
-
-
Vera, J.C.1
-
67
-
-
40749143164
-
Transcript profiling by 3¢-untranslated region sequencing resolves expression of gene families
-
Eveland A.L., McCarty D.R., and Koch K.E. Transcript profiling by 3¢-untranslated region sequencing resolves expression of gene families. Plant Physiol. 146 (2008) 32-44
-
(2008)
Plant Physiol.
, vol.146
, pp. 32-44
-
-
Eveland, A.L.1
McCarty, D.R.2
Koch, K.E.3
-
68
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
-
Filipowicz W., Bhattacharyya S.N., and Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?. Nat. Rev. Genet. 9 (2008) 102-114
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
69
-
-
24644490196
-
Elucidation of the small RNA component of the transcriptome
-
Lu C., Tej S.S., Luo S., Haudenschild C.D., Meyers B.C., and Green P.J. Elucidation of the small RNA component of the transcriptome. Science 309 (2005) 1567-1569
-
(2005)
Science
, vol.309
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
71
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z., et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2 (2004) E104
-
(2004)
PLoS Biol.
, vol.2
-
-
Xie, Z.1
-
72
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee R.C., Feinbaum R.L., and Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75 (1993) 843-854
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
74
-
-
33750440526
-
A two-hit trigger for siRNA biogenesis in plants
-
Axtell M.J., Jan C., Rajagopalan R., and Bartel D.P. A two-hit trigger for siRNA biogenesis in plants. Cell 127 (2006) 565-577
-
(2006)
Cell
, vol.127
, pp. 565-577
-
-
Axtell, M.J.1
Jan, C.2
Rajagopalan, R.3
Bartel, D.P.4
-
75
-
-
33745279055
-
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
-
Henderson I.R., et al. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet. 38 (2006) 721-725
-
(2006)
Nat. Genet.
, vol.38
, pp. 721-725
-
-
Henderson, I.R.1
-
76
-
-
33749404806
-
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
-
Lu C., et al. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res. 16 (2006) 1276-1288
-
(2006)
Genome Res.
, vol.16
, pp. 1276-1288
-
-
Lu, C.1
-
77
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R., Vaucheret H., Trejo J., and Bartel D.P. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 20 (2006) 3407-3425
-
(2006)
Genes Dev.
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
78
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
-
Fahlgren N., et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2 (2007) e219
-
(2007)
PLoS One
, vol.2
-
-
Fahlgren, N.1
-
79
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
Kasschau K.D., et al. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol. 5 (2007) e57
-
(2007)
PLoS Biol.
, vol.5
-
-
Kasschau, K.D.1
-
80
-
-
34250717043
-
Genome-wide analysis of the RNA-dependent RNA polymerase 6/dicer-like 4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting
-
Howell M.D., et al. Genome-wide analysis of the RNA-dependent RNA polymerase 6/dicer-like 4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 19 (2007) 926-942
-
(2007)
Plant Cell
, vol.19
, pp. 926-942
-
-
Howell, M.D.1
-
81
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
Yao Y., et al. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol. 8 (2007) R96
-
(2007)
Genome Biol.
, vol.8
-
-
Yao, Y.1
-
82
-
-
34548473571
-
Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants
-
Barakat A., Wall K., Leebens-Mack J., Wang Y.J., Carlson J.E., and Depamphilis C.W. Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J. 51 (2007) 991-1003
-
(2007)
Plant J.
, vol.51
, pp. 991-1003
-
-
Barakat, A.1
Wall, K.2
Leebens-Mack, J.3
Wang, Y.J.4
Carlson, J.E.5
Depamphilis, C.W.6
-
83
-
-
34249093687
-
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
-
Zhao T., et al. A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev. 21 (2007) 1190-1203
-
(2007)
Genes Dev.
, vol.21
, pp. 1190-1203
-
-
Zhao, T.1
-
84
-
-
33748661084
-
Marek's disease virus encodes microRNAs that map to meq and the latency-associated transcript
-
Burnside J., et al. Marek's disease virus encodes microRNAs that map to meq and the latency-associated transcript. J. Virol. 80 (2006) 8778-8786
-
(2006)
J. Virol.
, vol.80
, pp. 8778-8786
-
-
Burnside, J.1
-
85
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain
-
Berezikov E., et al. Diversity of microRNAs in human and chimpanzee brain. Nat. Genet. 38 (2006) 1375-1377
-
(2006)
Nat. Genet.
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
-
86
-
-
33746527679
-
Characterization of the piRNA complex from rat testes
-
Lau N.C., et al. Characterization of the piRNA complex from rat testes. Science 313 (2006) 363-367
-
(2006)
Science
, vol.313
, pp. 363-367
-
-
Lau, N.C.1
-
87
-
-
33745336617
-
A germline-specific class of small RNAs binds mammalian Piwi proteins
-
Girard A., Sachidanandam R., Hannon G.J., and Carmell M.A. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442 (2006) 199-202
-
(2006)
Nature
, vol.442
, pp. 199-202
-
-
Girard, A.1
Sachidanandam, R.2
Hannon, G.J.3
Carmell, M.A.4
-
88
-
-
34047154356
-
A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in zebrafish
-
Houwing S., et al. A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in zebrafish. Cell 129 (2007) 69-82
-
(2007)
Cell
, vol.129
, pp. 69-82
-
-
Houwing, S.1
-
89
-
-
37249005195
-
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
-
Brent M.R. Steady progress and recent breakthroughs in the accuracy of automated genome annotation. Nat. Rev. Genet. 9 (2008) 62-73
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 62-73
-
-
Brent, M.R.1
-
90
-
-
0030575911
-
Laser capture microdissection
-
Emmert-Buck M.R., et al. Laser capture microdissection. Science 274 (1996) 998-1001
-
(1996)
Science
, vol.274
, pp. 998-1001
-
-
Emmert-Buck, M.R.1
-
91
-
-
33845984917
-
Gene discovery and annotation using LCM-454 transcriptome sequencing
-
Emrich S.J., Barbazuk W.B., Li L., and Schnable P.S. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res. 17 (2007) 69-73
-
(2007)
Genome Res.
, vol.17
, pp. 69-73
-
-
Emrich, S.J.1
Barbazuk, W.B.2
Li, L.3
Schnable, P.S.4
-
92
-
-
34548128406
-
SNP discovery via 454 transcriptome sequencing
-
Barbazuk W.B., Emrich S.J., Chen H.D., Li L., and Schnable P.S. SNP discovery via 454 transcriptome sequencing. Plant J. 51 (2007) 910-918
-
(2007)
Plant J.
, vol.51
, pp. 910-918
-
-
Barbazuk, W.B.1
Emrich, S.J.2
Chen, H.D.3
Li, L.4
Schnable, P.S.5
-
93
-
-
0034614637
-
The hallmarks of cancer
-
Hanahan D., and Weinberg R.A. The hallmarks of cancer. Cell 100 (2000) 57-70
-
(2000)
Cell
, vol.100
, pp. 57-70
-
-
Hanahan, D.1
Weinberg, R.A.2
-
95
-
-
33745602221
-
The necessity of a human epigenome project
-
Esteller M. The necessity of a human epigenome project. Carcinogenesis 27 (2006) 1121-1125
-
(2006)
Carcinogenesis
, vol.27
, pp. 1121-1125
-
-
Esteller, M.1
-
96
-
-
33751505540
-
DNA methylation profiling of human chromosomes 6, 20 and 22
-
Eckhardt F., et al. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat. Genet. 38 (2006) 1378-1385
-
(2006)
Nat. Genet.
, vol.38
, pp. 1378-1385
-
-
Eckhardt, F.1
-
97
-
-
34548734299
-
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing
-
Taylor K.H., et al. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res. 67 (2007) 8511-8518
-
(2007)
Cancer Res.
, vol.67
, pp. 8511-8518
-
-
Taylor, K.H.1
-
98
-
-
40749109894
-
Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., et al. Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452 (2008) 215-219
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
-
99
-
-
39449088572
-
Genome-wide approaches to studying chromatin modifications
-
Schones D.E., and Zhao K. Genome-wide approaches to studying chromatin modifications. Nat. Rev. Genet. 9 (2008) 179-191
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 179-191
-
-
Schones, D.E.1
Zhao, K.2
-
100
-
-
0033388858
-
In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment
-
Kuo M.H., and Allis C.D. In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment. Methods 19 (1999) 425-433
-
(1999)
Methods
, vol.19
, pp. 425-433
-
-
Kuo, M.H.1
Allis, C.D.2
-
101
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B., et al. Genome-wide location and function of DNA binding proteins. Science 290 (2000) 2306-2309
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
-
102
-
-
3543008920
-
High-resolution genome-wide mapping of histone modifications
-
Roh T.Y., Ngau W.C., Cui K., Landsman D., and Zhao K. High-resolution genome-wide mapping of histone modifications. Nat. Biotechnol. 22 (2004) 1013-1016
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1013-1016
-
-
Roh, T.Y.1
Ngau, W.C.2
Cui, K.3
Landsman, D.4
Zhao, K.5
-
103
-
-
34250370060
-
Mapping the chromosomal targets of STAT1 by sequence tag analysis of genomic enrichment (STAGE)
-
Bhinge A.A., Kim J., Euskirchen G.M., Snyder M., and Iyer V.R. Mapping the chromosomal targets of STAT1 by sequence tag analysis of genomic enrichment (STAGE). Genome Res. 17 (2007) 910-916
-
(2007)
Genome Res.
, vol.17
, pp. 910-916
-
-
Bhinge, A.A.1
Kim, J.2
Euskirchen, G.M.3
Snyder, M.4
Iyer, V.R.5
-
104
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert I., et al. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446 (2007) 572-576
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
-
105
-
-
33845298285
-
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin
-
Johnson S.M., Tan F.J., McCullough H.L., Riordan D.P., and Fire A.Z. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. Genome Res. 16 (2006) 1505-1516
-
(2006)
Genome Res.
, vol.16
, pp. 1505-1516
-
-
Johnson, S.M.1
Tan, F.J.2
McCullough, H.L.3
Riordan, D.P.4
Fire, A.Z.5
-
106
-
-
36248989105
-
ChIP-Seq data reveal nucleosome architecture of human promoters
-
author reply 832-833
-
Schmid C.D., and Bucher P. ChIP-Seq data reveal nucleosome architecture of human promoters. Cell 131 (2007) 831-832 author reply 832-833
-
(2007)
Cell
, vol.131
, pp. 831-832
-
-
Schmid, C.D.1
Bucher, P.2
-
107
-
-
0038094501
-
Nucleosomes unfold completely at a transcriptionally active promoter
-
Boeger H., Griesenbeck J., Strattan J.S., and Kornberg R.D. Nucleosomes unfold completely at a transcriptionally active promoter. Mol. Cell 11 (2003) 1587-1598
-
(2003)
Mol. Cell
, vol.11
, pp. 1587-1598
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
108
-
-
33847793796
-
Activation of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-cell acute lymphoblastic leukemia by remote 3¢-BCL11B enhancers and coregulation by PU.1 and HMGA1
-
Nagel S., et al. Activation of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-cell acute lymphoblastic leukemia by remote 3¢-BCL11B enhancers and coregulation by PU.1 and HMGA1. Cancer Res. 67 (2007) 1461-1471
-
(2007)
Cancer Res.
, vol.67
, pp. 1461-1471
-
-
Nagel, S.1
-
109
-
-
33749400168
-
Chromosome conformation capture carbon copy (5C): a massively parallel solution for mapping interactions between genomic elements
-
Dostie J., et al. Chromosome conformation capture carbon copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res. 16 (2006) 1299-1309
-
(2006)
Genome Res.
, vol.16
, pp. 1299-1309
-
-
Dostie, J.1
-
110
-
-
0034177819
-
Nanopores and nucleic acids: prospects for ultrarapid sequencing
-
Deamer D.W., and Akeson M. Nanopores and nucleic acids: prospects for ultrarapid sequencing. Trends Biotechnol. 18 (2000) 147-151
-
(2000)
Trends Biotechnol.
, vol.18
, pp. 147-151
-
-
Deamer, D.W.1
Akeson, M.2
|