메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; HEXANUCLEOTIDE; NUCLEOTIDE; PENTANUCLEOTIDE; TRANSCRIPTOME; UNCLASSIFIED DRUG; MICROSATELLITE DNA; PLANT DNA;

EID: 80052825742     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-451     Document Type: Article
Times cited : (361)

References (72)
  • 1
    • 80053294883 scopus 로고    scopus 로고
    • Sesame breeding
    • Oxford: John Wiley & Sons, Janick J
    • Ashri A. Sesame breeding. Plant Breeding Reviews. Volume 16 2010, Oxford: John Wiley & Sons, Janick J.
    • (2010) Plant Breeding Reviews. Volume 16
    • Ashri, A.1
  • 2
    • 0000801577 scopus 로고
    • Evidence for cultivation of sesame in the ancient world
    • Bedigian D, Harlan J. Evidence for cultivation of sesame in the ancient world. Econ Bot 1986, 40(2):137-154.
    • (1986) Econ Bot , vol.40 , Issue.2 , pp. 137-154
    • Bedigian, D.1    Harlan, J.2
  • 4
    • 0022769732 scopus 로고
    • Contribution of lignan analogues to antioxidative activity of refined unroasted sesame seed oil
    • Fukuda Y, Nagata M, Osawa T, Namiki M. Contribution of lignan analogues to antioxidative activity of refined unroasted sesame seed oil. J Am Oil Chem Soc 1986, 63(8):1027-1031.
    • (1986) J Am Oil Chem Soc , vol.63 , Issue.8 , pp. 1027-1031
    • Fukuda, Y.1    Nagata, M.2    Osawa, T.3    Namiki, M.4
  • 5
    • 33847337461 scopus 로고    scopus 로고
    • Antioxidant protection of edible oils
    • 10.1007/s11130-006-0040-6, 17285359
    • Cheung SC, Szeto YT, Benzie IF. Antioxidant protection of edible oils. Plant Foods Hum Nutr 2007, 62(1):39-42. 10.1007/s11130-006-0040-6, 17285359.
    • (2007) Plant Foods Hum Nutr , vol.62 , Issue.1 , pp. 39-42
    • Cheung, S.C.1    Szeto, Y.T.2    Benzie, I.F.3
  • 6
    • 0028821244 scopus 로고
    • Changes of lipid, protein, RNA and fatty acid composition in developing sesame (Sesamum indicum L.) seeds
    • Chung CH, Yee YJ, Kim DH, Kim HK, Chung DS. Changes of lipid, protein, RNA and fatty acid composition in developing sesame (Sesamum indicum L.) seeds. Plant Sci 1995, 109(2):237-243.
    • (1995) Plant Sci , vol.109 , Issue.2 , pp. 237-243
    • Chung, C.H.1    Yee, Y.J.2    Kim, D.H.3    Kim, H.K.4    Chung, D.S.5
  • 7
    • 67650161507 scopus 로고    scopus 로고
    • A genetic linkage map construction for sesame (Sesamum indicum L.)
    • 10.1007/BF03191152, 21936032
    • Wei L-B, Zhang H-Y, Zheng Y-Z, Miao H-M, Zhang T-Z, Guo W-Z. A genetic linkage map construction for sesame (Sesamum indicum L.). Genes & Genomics 2009, 31(2):199-208. 10.1007/BF03191152, 21936032.
    • (2009) Genes & Genomics , vol.31 , Issue.2 , pp. 199-208
    • Wei, L.-B.1    Zhang, H.-Y.2    Zheng, Y.-Z.3    Miao, H.-M.4    Zhang, T.-Z.5    Guo, W.-Z.6
  • 8
    • 77957853026 scopus 로고    scopus 로고
    • Genetic improvement of oil quality in sesame (Sesamum indicum L.): assembling tools
    • Swedish University of Agricultural Sciences, Department of Crop Science
    • Were B. Genetic improvement of oil quality in sesame (Sesamum indicum L.): assembling tools. PhD thesis 2006, Swedish University of Agricultural Sciences, Department of Crop Science.
    • (2006) PhD thesis
    • Were, B.1
  • 9
    • 33645638896 scopus 로고    scopus 로고
    • Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP)
    • 1434769, 16483380
    • Laurentin H, Karlovsky P. Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP). BMC Genetics 2006, 7(1):10. 1434769, 16483380.
    • (2006) BMC Genetics , vol.7 , Issue.1 , pp. 10
    • Laurentin, H.1    Karlovsky, P.2
  • 10
    • 3442887470 scopus 로고    scopus 로고
    • Analysis of genetic diversity in Turkish sesame (Sesamum indicum L.) populations using RAPD markers
    • Ercan AG, Taskin M, Turgut K. Analysis of genetic diversity in Turkish sesame (Sesamum indicum L.) populations using RAPD markers. Genet Resour Crop Ev 2004, 51(6):599-607.
    • (2004) Genet Resour Crop Ev , vol.51 , Issue.6 , pp. 599-607
    • Ercan, A.G.1    Taskin, M.2    Turgut, K.3
  • 11
    • 0030094298 scopus 로고    scopus 로고
    • Structure and expression of two seed-specific cDNA clones encoding stearoyl-acyl carrier protein desaturase from sesame, Sesamum indicum L
    • Yukawa Y, Takaiwa F, Shoji K, Masuda K, Yamada K. Structure and expression of two seed-specific cDNA clones encoding stearoyl-acyl carrier protein desaturase from sesame, Sesamum indicum L. Plant Cell Physiol 1996, 37(2):201-205.
    • (1996) Plant Cell Physiol , vol.37 , Issue.2 , pp. 201-205
    • Yukawa, Y.1    Takaiwa, F.2    Shoji, K.3    Masuda, K.4    Yamada, K.5
  • 12
    • 0034782360 scopus 로고    scopus 로고
    • Characterization and temporal expression of a [omega]-6 fatty acid desaturase cDNA from sesame (Sesamum indicum L.) seeds
    • Jin U-H, Lee J-W, Chung Y-S, Lee J-H, Yi Y-B, Kim Y-K, Hyung N-I, Pyee J-H, Chung C-H. Characterization and temporal expression of a [omega]-6 fatty acid desaturase cDNA from sesame (Sesamum indicum L.) seeds. Plant Sci 2001, 161(5):935-941.
    • (2001) Plant Sci , vol.161 , Issue.5 , pp. 935-941
    • Jin, U.-H.1    Lee, J.-W.2    Chung, Y.-S.3    Lee, J.-H.4    Yi, Y.-B.5    Kim, Y.-K.6    Hyung, N.-I.7    Pyee, J.-H.8    Chung, C.-H.9
  • 13
    • 33748286787 scopus 로고    scopus 로고
    • Seed-specific expression of sesame microsomal oleic acid desaturase is controlled by combinatorial properties between negative cis-regulatory elements in the SeFAD2; promoter and enhancers in the 5'-UTR intron
    • 10.1007/s00438-006-0148-2, 16862401
    • Kim M, Kim H, Shin J, Chung C-H, Ohlrogge J, Suh M. Seed-specific expression of sesame microsomal oleic acid desaturase is controlled by combinatorial properties between negative cis-regulatory elements in the SeFAD2; promoter and enhancers in the 5'-UTR intron. Mol Genet Genomics 2006, 276(4):351-368. 10.1007/s00438-006-0148-2, 16862401.
    • (2006) Mol Genet Genomics , vol.276 , Issue.4 , pp. 351-368
    • Kim, M.1    Kim, H.2    Shin, J.3    Chung, C.-H.4    Ohlrogge, J.5    Suh, M.6
  • 16
    • 7844227430 scopus 로고    scopus 로고
    • The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis
    • Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 1996, 2(3):225-238.
    • (1996) Mol Breed , vol.2 , Issue.3 , pp. 225-238
    • Powell, W.1    Morgante, M.2    Andre, C.3    Hanafey, M.4    Vogel, J.5    Tingey, S.6    Rafalski, A.7
  • 17
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: a review
    • 10.1046/j.0962-1083.2001.01418.x, 11903900
    • Zane L, Bargelloni L, Patarnello T. Strategies for microsatellite isolation: a review. Mol Ecol 2002, 11(1):1-16. 10.1046/j.0962-1083.2001.01418.x, 11903900.
    • (2002) Mol Ecol , vol.11 , Issue.1 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 18
    • 0038717275 scopus 로고    scopus 로고
    • How much effort is required to isolate nuclear microsatellites from plants?
    • 10.1046/j.1365-294X.2003.01825.x, 12755865
    • Squirrell J, Hollingsworth PM, Woodhead M, Russell J, Lowe AJ, Gibby M, Powell W. How much effort is required to isolate nuclear microsatellites from plants?. Mol Ecol 2003, 12(6):1339-1348. 10.1046/j.1365-294X.2003.01825.x, 12755865.
    • (2003) Mol Ecol , vol.12 , Issue.6 , pp. 1339-1348
    • Squirrell, J.1    Hollingsworth, P.M.2    Woodhead, M.3    Russell, J.4    Lowe, A.J.5    Gibby, M.6    Powell, W.7
  • 19
    • 8744301202 scopus 로고    scopus 로고
    • Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags
    • 10.1007/s00122-004-1742-5, 15351929
    • Rungis D, Berube Y, Zhang J, Ralph S, Ritland CE, Ellis BE, Douglas C, Bohlmann J, Ritland K. Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags. Theor Appl Genet 2004, 109(6):1283-1294. 10.1007/s00122-004-1742-5, 15351929.
    • (2004) Theor Appl Genet , vol.109 , Issue.6 , pp. 1283-1294
    • Rungis, D.1    Berube, Y.2    Zhang, J.3    Ralph, S.4    Ritland, C.E.5    Ellis, B.E.6    Douglas, C.7    Bohlmann, J.8    Ritland, K.9
  • 21
    • 46049117054 scopus 로고    scopus 로고
    • Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping
    • 10.1186/1471-2164-9-287, 2435559, 18558001
    • Luro FL, Costantino G, Terol J, Argout X, Allario T, Wincker P, Talon M, Ollitrault P, Morillon R. Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping. BMC Genomics 2008, 9:287. 10.1186/1471-2164-9-287, 2435559, 18558001.
    • (2008) BMC Genomics , vol.9 , pp. 287
    • Luro, F.L.1    Costantino, G.2    Terol, J.3    Argout, X.4    Allario, T.5    Wincker, P.6    Talon, M.7    Ollitrault, P.8    Morillon, R.9
  • 22
    • 33845869870 scopus 로고    scopus 로고
    • Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species
    • 10.1007/s00122-006-0440-x, 17115127
    • Aggarwal RK, Hendre PS, Varshney RK, Bhat PR, Krishnakumar V, Singh L. Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. Theor Appl Genet 2007, 114(2):359-372. 10.1007/s00122-006-0440-x, 17115127.
    • (2007) Theor Appl Genet , vol.114 , Issue.2 , pp. 359-372
    • Aggarwal, R.K.1    Hendre, P.S.2    Varshney, R.K.3    Bhat, P.R.4    Krishnakumar, V.5    Singh, L.6
  • 23
    • 33748967940 scopus 로고    scopus 로고
    • SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus
    • 10.1007/s00438-006-0153-5, 16924545
    • Poncet V, Rondeau M, Tranchant C, Cayrel A, Hamon S, de Kochko A, Hamon P. SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus. Mol Genet Genomics 2006, 276(5):436-449. 10.1007/s00438-006-0153-5, 16924545.
    • (2006) Mol Genet Genomics , vol.276 , Issue.5 , pp. 436-449
    • Poncet, V.1    Rondeau, M.2    Tranchant, C.3    Cayrel, A.4    Hamon, S.5    de Kochko, A.6    Hamon, P.7
  • 24
    • 1542291042 scopus 로고    scopus 로고
    • Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp
    • 10.1007/s00122-003-1450-6, 13679975
    • Eujayl I, Sledge MK, Wang L, May GD, Chekhovskiy K, Zwonitzer JC, Mian MA. Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp. Theor Appl Genet 2004, 108(3):414-422. 10.1007/s00122-003-1450-6, 13679975.
    • (2004) Theor Appl Genet , vol.108 , Issue.3 , pp. 414-422
    • Eujayl, I.1    Sledge, M.K.2    Wang, L.3    May, G.D.4    Chekhovskiy, K.5    Zwonitzer, J.C.6    Mian, M.A.7
  • 25
    • 0031687461 scopus 로고    scopus 로고
    • Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants
    • Peakall R, Gilmore S, Keys W, Morgante M, Rafalski A. Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants. Mol Biol Evol 1998, 15(10):1275-1287.
    • (1998) Mol Biol Evol , vol.15 , Issue.10 , pp. 1275-1287
    • Peakall, R.1    Gilmore, S.2    Keys, W.3    Morgante, M.4    Rafalski, A.5
  • 26
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney RK, Graner A. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 2003, 106(3):411-422.
    • (2003) Theor Appl Genet , vol.106 , Issue.3 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 27
    • 23944517036 scopus 로고    scopus 로고
    • High transferability of bread wheat EST-derived SSRs to other cereals
    • 10.1007/s00122-005-2041-5, 16034582
    • Zhang LY, Bernard M, Leroy P, Feuillet C, Sourdille P. High transferability of bread wheat EST-derived SSRs to other cereals. Theor Appl Genet 2005, 111(4):677-687. 10.1007/s00122-005-2041-5, 16034582.
    • (2005) Theor Appl Genet , vol.111 , Issue.4 , pp. 677-687
    • Zhang, L.Y.1    Bernard, M.2    Leroy, P.3    Feuillet, C.4    Sourdille, P.5
  • 29
    • 0035026747 scopus 로고    scopus 로고
    • Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum
    • 10.1016/S0168-9452(01)00365-X, 11337068
    • Cordeiro GM, Casu R, McIntyre CL, Manners JM, Henry RJ. Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci 2001, 160(6):1115-1123. 10.1016/S0168-9452(01)00365-X, 11337068.
    • (2001) Plant Sci , vol.160 , Issue.6 , pp. 1115-1123
    • Cordeiro, G.M.1    Casu, R.2    McIntyre, C.L.3    Manners, J.M.4    Henry, R.J.5
  • 30
    • 4043111253 scopus 로고    scopus 로고
    • Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs
    • Liewlaksaneeyanawin C, Ritland CE, El-Kassaby YA, Ritland K. Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs. Theor Appl Genet 2004, 109(2):361-369.
    • (2004) Theor Appl Genet , vol.109 , Issue.2 , pp. 361-369
    • Liewlaksaneeyanawin, C.1    Ritland, C.E.2    El-Kassaby, Y.A.3    Ritland, K.4
  • 31
    • 33847051947 scopus 로고    scopus 로고
    • The molecular ecologist's guide to expressed sequence tags
    • Bouck A, Vision T. The molecular ecologist's guide to expressed sequence tags. Mol Ecol 2007, 16(5):907-924.
    • (2007) Mol Ecol , vol.16 , Issue.5 , pp. 907-924
    • Bouck, A.1    Vision, T.2
  • 32
    • 40049108105 scopus 로고    scopus 로고
    • Gene discovery and annotation using LCM-454 transcriptome sequencing
    • 1356123, 16344566
    • Emrich SJ, Barbazuk WB, Li L, Schnable PS. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 2006, 16(12):1-5. 1356123, 16344566.
    • (2006) Genome Res , vol.16 , Issue.12 , pp. 1-5
    • Emrich, S.J.1    Barbazuk, W.B.2    Li, L.3    Schnable, P.S.4
  • 33
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • 10.1111/j.1365-294X.2008.03666.x, 18266620
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 2008, 17(7):1636-1647. 10.1111/j.1365-294X.2008.03666.x, 18266620.
    • (2008) Mol Ecol , vol.17 , Issue.7 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5    Hanski, I.6    Marden, J.H.7
  • 34
    • 34548128406 scopus 로고    scopus 로고
    • SNP discovery via 454 transcriptome sequencing
    • 10.1111/j.1365-313X.2007.03193.x, 2169515, 17662031
    • Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS. SNP discovery via 454 transcriptome sequencing. Plant J 2007, 51(5):910-918. 10.1111/j.1365-313X.2007.03193.x, 2169515, 17662031.
    • (2007) Plant J , vol.51 , Issue.5 , pp. 910-918
    • Barbazuk, W.B.1    Emrich, S.J.2    Chen, H.D.3    Li, L.4    Schnable, P.S.5
  • 35
    • 48249125753 scopus 로고    scopus 로고
    • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    • 10.1186/1471-2164-9-312, 2483731, 18590545
    • Novaes E, Drost DR, Farmerie WG, Pappas GJ, Grattapaglia D, Sederoff RR, Kirst M. High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics 2008, 9:312. 10.1186/1471-2164-9-312, 2483731, 18590545.
    • (2008) BMC Genomics , vol.9 , pp. 312
    • Novaes, E.1    Drost, D.R.2    Farmerie, W.G.3    Pappas, G.J.4    Grattapaglia, D.5    Sederoff, R.R.6    Kirst, M.7
  • 36
    • 49249097861 scopus 로고    scopus 로고
    • Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce
    • 10.1111/j.1365-294X.2008.03840.x, 2613251, 18662225
    • Namroud MC, Beaulieu J, Juge N, Laroche J, Bousquet J. Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce. Mol Ecol 2008, 17(16):3599-3613. 10.1111/j.1365-294X.2008.03840.x, 2613251, 18662225.
    • (2008) Mol Ecol , vol.17 , Issue.16 , pp. 3599-3613
    • Namroud, M.C.1    Beaulieu, J.2    Juge, N.3    Laroche, J.4    Bousquet, J.5
  • 37
    • 77951894310 scopus 로고    scopus 로고
    • Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
    • 10.1186/1471-2164-11-180, 2851599, 20233449
    • Parchman T, Geist K, Grahnen J, Benkman C, Buerkle CA. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics 2010, 11(1):180. 10.1186/1471-2164-11-180, 2851599, 20233449.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 180
    • Parchman, T.1    Geist, K.2    Grahnen, J.3    Benkman, C.4    Buerkle, C.A.5
  • 38
    • 77951121533 scopus 로고    scopus 로고
    • De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
    • 10.1186/1471-2164-11-262, 2873478, 20416102
    • Sun C, Li Y, Wu Q, Luo H, Sun Y, Song J, Lui E, Chen S. De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics 2010, 11(1):262. 10.1186/1471-2164-11-262, 2873478, 20416102.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 262
    • Sun, C.1    Li, Y.2    Wu, Q.3    Luo, H.4    Sun, Y.5    Song, J.6    Lui, E.7    Chen, S.8
  • 39
    • 64749084488 scopus 로고    scopus 로고
    • An approach to transcriptome analysis of non-model organisms using short-read sequences
    • Collins LJ, Biggs PJ, Voelckel C, Joly S. An approach to transcriptome analysis of non-model organisms using short-read sequences. Genome Inform 2008, 21:3-14.
    • (2008) Genome Inform , vol.21 , pp. 3-14
    • Collins, L.J.1    Biggs, P.J.2    Voelckel, C.3    Joly, S.4
  • 40
    • 64749090107 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
    • 10.1111/j.1467-7652.2008.00396.x, 19207216
    • Trick M, Long Y, Meng J, Bancroft I. Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J 2009, 7(4):334-346. 10.1111/j.1467-7652.2008.00396.x, 19207216.
    • (2009) Plant Biotechnol J , vol.7 , Issue.4 , pp. 334-346
    • Trick, M.1    Long, Y.2    Meng, J.3    Bancroft, I.4
  • 42
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • 10.1101/gr.097261.109, 2813482, 20019144
    • Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010, 20(2):265-272. 10.1101/gr.097261.109, 2813482, 20019144.
    • (2010) Genome Res , vol.20 , Issue.2 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5    Shi, Z.6    Li, Y.7    Li, S.8    Shan, G.9    Kristiansen, K.10
  • 43
    • 68749107979 scopus 로고    scopus 로고
    • Deep sequencing of the zebrafish transcriptome response to mycobacterium infection
    • 10.1016/j.molimm.2009.07.002, 19631987
    • Hegedus Z, Zakrzewska A, Agoston VC, Ordas A, Racz P, Mink M, Spaink HP, Meijer AH. Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Mol Immunol 2009, 46(15):2918-2930. 10.1016/j.molimm.2009.07.002, 19631987.
    • (2009) Mol Immunol , vol.46 , Issue.15 , pp. 2918-2930
    • Hegedus, Z.1    Zakrzewska, A.2    Agoston, V.C.3    Ordas, A.4    Racz, P.5    Mink, M.6    Spaink, H.P.7    Meijer, A.H.8
  • 44
    • 77956107299 scopus 로고    scopus 로고
    • Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
    • 10.1093/nar/gkq256, 2926611, 20392818
    • Wang B, Guo G, Wang C, Lin Y, Wang X, Zhao M, Guo Y, He M, Zhang Y, Pan L. Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Nucleic Acids Res 2010, 38(15):5075-5087. 10.1093/nar/gkq256, 2926611, 20392818.
    • (2010) Nucleic Acids Res , vol.38 , Issue.15 , pp. 5075-5087
    • Wang, B.1    Guo, G.2    Wang, C.3    Lin, Y.4    Wang, X.5    Zhao, M.6    Guo, Y.7    He, M.8    Zhang, Y.9    Pan, L.10
  • 45
    • 75149155568 scopus 로고    scopus 로고
    • The sequence and de novo assembly of the giant panda genome
    • 10.1038/nature08696, 20010809
    • Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, et al. The sequence and de novo assembly of the giant panda genome. Nature 2010, 463(7279):311-317. 10.1038/nature08696, 20010809.
    • (2010) Nature , vol.463 , Issue.7279 , pp. 311-317
    • Li, R.1    Fan, W.2    Tian, G.3    Zhu, H.4    He, L.5    Cai, J.6    Huang, Q.7    Cai, Q.8    Li, B.9    Bai, Y.10
  • 46
    • 77954450225 scopus 로고    scopus 로고
    • De novo characterization of a whitefly transcriptome and analysis of its gene expression during development
    • 10.1186/1471-2164-11-400, 2898760, 20573269
    • Wang X-W, Luan J-B, Li J-M, Bao Y-Y, Zhang C-X, Liu S-S. De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 2010, 11(1):400. 10.1186/1471-2164-11-400, 2898760, 20573269.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 400
    • Wang, X.-W.1    Luan, J.-B.2    Li, J.-M.3    Bao, Y.-Y.4    Zhang, C.-X.5    Liu, S.-S.6
  • 47
    • 77953153394 scopus 로고    scopus 로고
    • Transcriptome profile analysis of floral sex determination in cucumber
    • 10.1016/j.jplph.2010.02.004, 20303197
    • Wu T, Qin Z, Zhou X, Feng Z, Du Y. Transcriptome profile analysis of floral sex determination in cucumber. J Plant Physiol 2010, 167(11):905-913. 10.1016/j.jplph.2010.02.004, 20303197.
    • (2010) J Plant Physiol , vol.167 , Issue.11 , pp. 905-913
    • Wu, T.1    Qin, Z.2    Zhou, X.3    Feng, Z.4    Du, Y.5
  • 48
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli C, Jongeneel CV, Bucher P. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Conf Intell Syst Mol Biol 1999, 138-148.
    • (1999) Proc Int Conf Intell Syst Mol Biol , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 49
    • 77649112643 scopus 로고    scopus 로고
    • Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
    • 10.1186/1471-2164-11-94, 2829513, 20141623
    • Zeng S, Xiao G, Guo J, Fei Z, Xu Y, Roe B, Wang Y. Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim. BMC Genomics 2010, 11(1):94. 10.1186/1471-2164-11-94, 2829513, 20141623.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 94
    • Zeng, S.1    Xiao, G.2    Guo, J.3    Fei, Z.4    Xu, Y.5    Roe, B.6    Wang, Y.7
  • 51
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • 10.1111/j.1365-294X.2008.03666.x, 18266620
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 2008, 17(7):1636-1647. 10.1111/j.1365-294X.2008.03666.x, 18266620.
    • (2008) Mol Ecol , vol.17 , Issue.7 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5    Hanski, I.6    Marden, J.H.7
  • 52
    • 78650502725 scopus 로고    scopus 로고
    • De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
    • 10.1186/1471-2164-11-726, 3016421, 21182800
    • Wang Z, Fang B, Chen J, Zhang X, Luo Z, Huang L, Chen X, Li Y. De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas). BMC Genomics 2010, 11(1):726. 10.1186/1471-2164-11-726, 3016421, 21182800.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 726
    • Wang, Z.1    Fang, B.2    Chen, J.3    Zhang, X.4    Luo, Z.5    Huang, L.6    Chen, X.7    Li, Y.8
  • 54
    • 46149084000 scopus 로고    scopus 로고
    • Relationship between metabolic and genomic diversity in sesame (Sesamum indicum L.)
    • 10.1186/1471-2164-9-250, 2440766, 18510719
    • Laurentin H, Ratzinger A, Karlovsky P. Relationship between metabolic and genomic diversity in sesame (Sesamum indicum L.). BMC Genomics 2008, 9(1):250. 10.1186/1471-2164-9-250, 2440766, 18510719.
    • (2008) BMC Genomics , vol.9 , Issue.1 , pp. 250
    • Laurentin, H.1    Ratzinger, A.2    Karlovsky, P.3
  • 55
    • 0036302486 scopus 로고    scopus 로고
    • Genetic relationships of sesame germplasm collection as revealed by inter-simple sequence repeats
    • Kim DH, Zur G, Danin-Poleg Y, Lee SW, Shim KB, Kang CW, Kashi Y. Genetic relationships of sesame germplasm collection as revealed by inter-simple sequence repeats. Plant Breed 2002, 121(3):259-262.
    • (2002) Plant Breed , vol.121 , Issue.3 , pp. 259-262
    • Kim, D.H.1    Zur, G.2    Danin-Poleg, Y.3    Lee, S.W.4    Shim, K.B.5    Kang, C.W.6    Kashi, Y.7
  • 56
    • 0031853469 scopus 로고    scopus 로고
    • Diversity in Indian sesame collection and stratification of germplasm accessions in different diversity groups
    • Bisht IS, Mahajan RK, Loknathan TR, Agrawal RC. Diversity in Indian sesame collection and stratification of germplasm accessions in different diversity groups. Genet Resour Crop Ev 1998, 45(4):325-335.
    • (1998) Genet Resour Crop Ev , vol.45 , Issue.4 , pp. 325-335
    • Bisht, I.S.1    Mahajan, R.K.2    Loknathan, T.R.3    Agrawal, R.C.4
  • 57
    • 33645754932 scopus 로고    scopus 로고
    • Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species
    • 10.1139/g05-060, 16391668
    • Kumpatla SP, Mukhopadhyay S. Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species. Genome 2005, 48(6):985-998. 10.1139/g05-060, 16391668.
    • (2005) Genome , vol.48 , Issue.6 , pp. 985-998
    • Kumpatla, S.P.1    Mukhopadhyay, S.2
  • 58
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: survey and analysis
    • 10.1101/gr.10.7.967, 310925, 10899146
    • Toth G, Gaspari Z, Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res 2000, 10(7):967-981. 10.1101/gr.10.7.967, 310925, 10899146.
    • (2000) Genome Res , vol.10 , Issue.7 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 59
    • 25444467752 scopus 로고    scopus 로고
    • Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
    • 10.1186/1471-2164-6-23, 550658, 15720707
    • La Rota M, Kantety R, Yu J-K, Sorrells M. Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 2005, 6(1):23. 10.1186/1471-2164-6-23, 550658, 15720707.
    • (2005) BMC Genomics , vol.6 , Issue.1 , pp. 23
    • La Rota, M.1    Kantety, R.2    Yu, J.-K.3    Sorrells, M.4
  • 60
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • 10.1038/ng822, 11799393
    • Morgante M, Hanafey M, Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 2002, 30(2):194-200. 10.1038/ng822, 11799393.
    • (2002) Nat Genet , vol.30 , Issue.2 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 61
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • 10.1023/A:1014875206165, 11999831
    • Kantety RV, La Rota M, Matthews DE, Sorrells ME. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 2002, 48:501-510. 10.1023/A:1014875206165, 11999831.
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    La Rota, M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 62
    • 0035839055 scopus 로고    scopus 로고
    • DNA methylation and epigenetic inheritance in plants and filamentous fungi
    • 10.1126/science.293.5532.1070, 11498574
    • Martienssen RA, Colot V. DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 2001, 293(5532):1070-1074. 10.1126/science.293.5532.1070, 11498574.
    • (2001) Science , vol.293 , Issue.5532 , pp. 1070-1074
    • Martienssen, R.A.1    Colot, V.2
  • 63
    • 4544324342 scopus 로고    scopus 로고
    • Tall fescue EST-SSR markers with transferability across several grass species
    • 10.1007/s00122-004-1681-1, 15205737
    • Saha M, Mian M, Eujayl I, Zwonitzer J, Wang L, May G. Tall fescue EST-SSR markers with transferability across several grass species. Theor Appl Genet 2004, 109(4):783-791. 10.1007/s00122-004-1681-1, 15205737.
    • (2004) Theor Appl Genet , vol.109 , Issue.4 , pp. 783-791
    • Saha, M.1    Mian, M.2    Eujayl, I.3    Zwonitzer, J.4    Wang, L.5    May, G.6
  • 64
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: features and applications
    • 10.1016/j.tibtech.2004.11.005, 15629858
    • Varshney RK, Graner A, Sorrells ME. Genic microsatellite markers in plants: features and applications. Trends Biotechnol 2005, 23(1):48-55. 10.1016/j.tibtech.2004.11.005, 15629858.
    • (2005) Trends Biotechnol , vol.23 , Issue.1 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 65
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 67
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27, 102409, 10592173
    • Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30. 10.1093/nar/28.1.27, 102409, 10592173.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 68
    • 0026029034 scopus 로고
    • Amino acid and cDNA sequences of a methionine-rich 2S protein from sunflower seed (Helianthus annuus L.)
    • 10.1111/j.1432-1033.1991.tb15710.x, 1997318
    • Kortt AA, Caldwell JB, Lilley GG, Higgins TJV. Amino acid and cDNA sequences of a methionine-rich 2S protein from sunflower seed (Helianthus annuus L.). Eur J Biochem 1991, 195(2):329-334. 10.1111/j.1432-1033.1991.tb15710.x, 1997318.
    • (1991) Eur J Biochem , vol.195 , Issue.2 , pp. 329-334
    • Kortt, A.A.1    Caldwell, J.B.2    Lilley, G.G.3    Higgins, T.J.V.4
  • 69
    • 0031526548 scopus 로고    scopus 로고
    • Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
    • Porebski S, Bailey L, Baum B. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep 1997, 15(1):8-15.
    • (1997) Plant Mol Biol Rep , vol.15 , Issue.1 , pp. 8-15
    • Porebski, S.1    Bailey, L.2    Baum, B.3
  • 70
    • 0025835296 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • 10.1016/0003-2697(91)90120-I, 1716076
    • Bassam BJ, Caetano-Anolles G, Gresshoff PM. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 1991, 196(1):80-83. 10.1016/0003-2697(91)90120-I, 1716076.
    • (1991) Anal Biochem , vol.196 , Issue.1 , pp. 80-83
    • Bassam, B.J.1    Caetano-Anolles, G.2    Gresshoff, P.M.3
  • 71
    • 0003377384 scopus 로고    scopus 로고
    • Population genetic analysis of co-dominant and dominant markers and quantitative traits
    • Yeh FC, Boyle TJB. Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg J Bot 1997, 129:157.
    • (1997) Belg J Bot , vol.129 , pp. 157
    • Yeh, F.C.1    Boyle, T.J.B.2
  • 72
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research
    • Peakall ROD, Smouse PE. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 2006, 6(1):288-295.
    • (2006) Mol Ecol Notes , vol.6 , Issue.1 , pp. 288-295
    • Peakall, R.O.D.1    Smouse, P.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.