-
1
-
-
0029020282
-
Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification
-
Hanks SK, Hunter T. Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995, 9:576-596.
-
(1995)
FASEB J
, vol.9
, pp. 576-596
-
-
Hanks, S.K.1
Hunter, T.2
-
2
-
-
79952112019
-
The MAP Kinase Signaling Cascades: A System of Hundreds of Components Regulates a Diverse Array of Physiological Functions
-
Totowa: Humana Press, Seger R
-
Keshet Y, Seger R. The MAP Kinase Signaling Cascades: A System of Hundreds of Components Regulates a Diverse Array of Physiological Functions. MAP Kinase Signaling Protocols. Methods in Molecular Biology, vol. 661 2010, 3-38. Totowa: Humana Press, Seger R.
-
(2010)
MAP Kinase Signaling Protocols. Methods in Molecular Biology, vol. 661
, pp. 3-38
-
-
Keshet, Y.1
Seger, R.2
-
3
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin Z-Y, Breitkreutz B-J, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras A-C, Nesvizhskii AI, Tyers M. A global protein kinase and phosphatase interaction network in yeast. Science 2010, 328:1043-1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
Larsen, B.6
Lin, Z.-Y.7
Breitkreutz, B.-J.8
Stark, C.9
Liu, G.10
Ahn, J.11
Dewar-Darch, D.12
Reguly, T.13
Tang, X.14
Almeida, R.15
Qin, Z.S.16
Pawson, T.17
Gingras, A.-C.18
Nesvizhskii, A.I.19
Tyers, M.20
more..
-
4
-
-
9144253940
-
Arabidopsis kinome: after the casting
-
Champion A, Kreis M, Mockaitis K, Picaud A, Henry Y. Arabidopsis kinome: after the casting. Funct Integr Genomics 2004, 4:163-187.
-
(2004)
Funct Integr Genomics
, vol.4
, pp. 163-187
-
-
Champion, A.1
Kreis, M.2
Mockaitis, K.3
Picaud, A.4
Henry, Y.5
-
5
-
-
33645765762
-
The Dictyostelium kinome-analysis of the protein kinases from a simple model organism
-
Goldberg JM, Manning G, Liu A, Fey P, Pilcher KE, Xu Y, Smith JL. The Dictyostelium kinome-analysis of the protein kinases from a simple model organism. PLoS Genet 2006, 2:e38.
-
(2006)
PLoS Genet
, vol.2
, pp. e38
-
-
Goldberg, J.M.1
Manning, G.2
Liu, A.3
Fey, P.4
Pilcher, K.E.5
Xu, Y.6
Smith, J.L.7
-
6
-
-
0036806311
-
Evolution of protein kinase signaling from yeast to man
-
Manning G, Plowman GD, Hunter T, Sudarsanam S. Evolution of protein kinase signaling from yeast to man. Trends Biochem Sci 2002, 27:514-520.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 514-520
-
-
Manning, G.1
Plowman, G.D.2
Hunter, T.3
Sudarsanam, S.4
-
7
-
-
36248961650
-
The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe
-
Miranda-Saavedra D, Stark MJR, Packer JC, Vivares CP, Doerig C, Barton GJ. The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe. BMC Genomics 2007, 8:309.
-
(2007)
BMC Genomics
, vol.8
, pp. 309
-
-
Miranda-Saavedra, D.1
Stark, M.J.R.2
Packer, J.C.3
Vivares, C.P.4
Doerig, C.5
Barton, G.J.6
-
8
-
-
79960603102
-
The minimal kinome of Giardia lamblia illuminates early kinase evolution and unique parasite biology
-
Manning G, Reiner DS, Lauwaet T, Dacre M, Smith A, Zhai Y, Svard S, Gillin FD. The minimal kinome of Giardia lamblia illuminates early kinase evolution and unique parasite biology. Genome Biol 2011, 12:R66.
-
(2011)
Genome Biol
, vol.12
, pp. R66
-
-
Manning, G.1
Reiner, D.S.2
Lauwaet, T.3
Dacre, M.4
Smith, A.5
Zhai, Y.6
Svard, S.7
Gillin, F.D.8
-
9
-
-
30744464566
-
Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established
-
Deutscher J, Saier MH. Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established. J Mol Microbiol Biotechnol 2005, 9:125-131.
-
(2005)
J Mol Microbiol Biotechnol
, vol.9
, pp. 125-131
-
-
Deutscher, J.1
Saier, M.H.2
-
10
-
-
84898080963
-
Protein Ser/Thr/Tyr phosphorylation in the archaea
-
Kennelly PJ. Protein Ser/Thr/Tyr phosphorylation in the archaea. J Biol Chem 2014, 289:9480-9487.
-
(2014)
J Biol Chem
, vol.289
, pp. 9480-9487
-
-
Kennelly, P.J.1
-
11
-
-
33947226782
-
Structural and functional diversity of the microbial kinome
-
Kannan N, Taylor SS, Zhai Y, Venter JC, Manning G. Structural and functional diversity of the microbial kinome. PLoS Biol 2007, 5:e17.
-
(2007)
PLoS Biol
, vol.5
, pp. e17
-
-
Kannan, N.1
Taylor, S.S.2
Zhai, Y.3
Venter, J.C.4
Manning, G.5
-
12
-
-
41849110846
-
Structural evolution of the protein kinase-like superfamily
-
Scheeff ED, Bourne PE. Structural evolution of the protein kinase-like superfamily. PLoS Comput Biol 2005, 1:e49.
-
(2005)
PLoS Comput Biol
, vol.1
, pp. e49
-
-
Scheeff, E.D.1
Bourne, P.E.2
-
13
-
-
84873252943
-
Role of the putative osmosensor Arabidopsis histidine kinase1 in dehydration avoidance and low-water-potential response
-
Kumar MN, Jane W-N, Verslues PE. Role of the putative osmosensor Arabidopsis histidine kinase1 in dehydration avoidance and low-water-potential response. Plant Physiol 2013, 161:942-953.
-
(2013)
Plant Physiol
, vol.161
, pp. 942-953
-
-
Kumar, M.N.1
Jane, W.-N.2
Verslues, P.E.3
-
14
-
-
84861914418
-
Histidine kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis
-
Hall BP, Shakeel SN, Amir M, Ul Haq N, Qu X, Schaller GE. Histidine kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis. Plant Physiol 2012, 159:682-695.
-
(2012)
Plant Physiol
, vol.159
, pp. 682-695
-
-
Hall, B.P.1
Shakeel, S.N.2
Amir, M.3
Ul Haq, N.4
Qu, X.5
Schaller, G.E.6
-
15
-
-
0023885305
-
The protein kinase family: conserved features and deduced phylogeny of the catalytic domains
-
Hanks SK, Quinn AM, Hunter T. The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. Science 1988, 241:42-52.
-
(1988)
Science
, vol.241
, pp. 42-52
-
-
Hanks, S.K.1
Quinn, A.M.2
Hunter, T.3
-
16
-
-
0031722706
-
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily
-
Leonard CJ, Aravind L, Koonin EV. Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily. Genome Res 1998, 8:1038-1047.
-
(1998)
Genome Res
, vol.8
, pp. 1038-1047
-
-
Leonard, C.J.1
Aravind, L.2
Koonin, E.V.3
-
18
-
-
79960006957
-
Signal processing by protein tyrosine phosphorylation in plants
-
Ghelis T. Signal processing by protein tyrosine phosphorylation in plants. Plant Signal Behav 2011, 6:942-951.
-
(2011)
Plant Signal Behav
, vol.6
, pp. 942-951
-
-
Ghelis, T.1
-
19
-
-
0027938679
-
Smallest eukaryotic organism
-
Courties C, Vaquer A, Troussellier M, Lautier J, Chre´tiennot-Dinet MJ, Neveux J, Machado C, Claustre H. Smallest eukaryotic organism. Nature 1994, 370:255-255.
-
(1994)
Nature
, vol.370
, pp. 255-255
-
-
Courties, C.1
Vaquer, A.2
Troussellier, M.3
Lautier, J.4
Chre´tiennot-Dinet, M.J.5
Neveux, J.6
Machado, C.7
Claustre, H.8
-
20
-
-
34250689932
-
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
-
Palenik B, Grimwood J, Aerts A, Rouze´ P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, Napoli C, Gendler K, Manuell A, Tai V, Vallon O, Piganeau G, Jancek S, Heijde M, Jabbari K, Bowler C, Lohr M, Robbens S, Werner G, Dubchak I, Pazour GJ, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A 2007, 104:7705-7710.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 7705-7710
-
-
Palenik, B.1
Grimwood, J.2
Aerts, A.3
Rouze´, P.4
Salamov, A.5
Putnam, N.6
Dupont, C.7
Jorgensen, R.8
Derelle, E.9
Rombauts, S.10
Zhou, K.11
Otillar, R.12
Merchant, S.S.13
Podell, S.14
Gaasterland, T.15
Napoli, C.16
Gendler, K.17
Manuell, A.18
Tai, V.19
Vallon, O.20
Piganeau, G.21
Jancek, S.22
Heijde, M.23
Jabbari, K.24
Bowler, C.25
Lohr, M.26
Robbens, S.27
Werner, G.28
Dubchak, I.29
Pazour, G.J.30
more..
-
21
-
-
27444442657
-
The tree of eukaryotes
-
Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, Pearlman RE, Roger AJ, Gray MW. The tree of eukaryotes. Trends Ecol Evol 2005, 20:670-676.
-
(2005)
Trends Ecol Evol
, vol.20
, pp. 670-676
-
-
Keeling, P.J.1
Burger, G.2
Durnford, D.G.3
Lang, B.F.4
Lee, R.W.5
Pearlman, R.E.6
Roger, A.J.7
Gray, M.W.8
-
22
-
-
40349094722
-
3-D ultrastructure of O. tauri: electron cryotomography of an entire eukaryotic cell
-
Henderson GP, Gan L, Jensen GJ. 3-D ultrastructure of O. tauri: electron cryotomography of an entire eukaryotic cell. PLoS One 2007, 2:e749.
-
(2007)
PLoS One
, vol.2
, pp. e749
-
-
Henderson, G.P.1
Gan, L.2
Jensen, G.J.3
-
23
-
-
31044450556
-
Natural synchronisation for the study of cell division in the green unicellular alga Ostreococcus tauri
-
Farinas B, Mary C, De Manes C-L O, Bhaud Y, Peaucellier G, Moreau H. Natural synchronisation for the study of cell division in the green unicellular alga Ostreococcus tauri. Plant Mol Biol 2006, 60:277-292.
-
(2006)
Plant Mol Biol
, vol.60
, pp. 277-292
-
-
Farinas, B.1
Mary, C.2
De Manes C-L, O.3
Bhaud, Y.4
Peaucellier, G.5
Moreau, H.6
-
24
-
-
84867626009
-
Genomic transformation of the picoeukaryote Ostreococcus tauri
-
van Ooijen G, Knox K, Kis K, Bouget F-Y, Millar AJ. Genomic transformation of the picoeukaryote Ostreococcus tauri. J Vis Exp 2012, (65):e4074.
-
(2012)
J Vis Exp
, Issue.65
, pp. e4074
-
-
van Ooijen, G.1
Knox, K.2
Kis, K.3
Bouget, F.-Y.4
Millar, A.J.5
-
25
-
-
73249122674
-
Clocks in the green lineage: comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus
-
Corellou F, Schwartz C, Motta J-P, Djouani-Tahri EB, Sanchez F, Bouget F-Y. Clocks in the green lineage: comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus. Plant Cell 2009, 21:3436-3449.
-
(2009)
Plant Cell
, vol.21
, pp. 3436-3449
-
-
Corellou, F.1
Schwartz, C.2
Motta, J.-P.3
Djouani-Tahri, E.B.4
Sanchez, F.5
Bouget, F.-Y.6
-
26
-
-
80052028934
-
Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri
-
Le Bihan T, Martin SF, Chirnside ES, van Ooijen G, Barrios-Llerena ME, O'Neill JS, Shliaha PV, Kerr LE, Millar AJ. Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri. J Proteomics 2011, 74:2060-2070.
-
(2011)
J Proteomics
, vol.74
, pp. 2060-2070
-
-
Le Bihan, T.1
Martin, S.F.2
Chirnside, E.S.3
van Ooijen, G.4
Barrios-Llerena, M.E.5
O'Neill, J.S.6
Shliaha, P.V.7
Kerr, L.E.8
Millar, A.J.9
-
27
-
-
84855533583
-
Proteome turnover in the green alga Ostreococcus tauri by time course 15 N metabolic labeling mass spectrometry
-
Martin SF, Munagapati VS, Salvo-Chirnside E, Kerr LE, Le Bihan T. Proteome turnover in the green alga Ostreococcus tauri by time course 15 N metabolic labeling mass spectrometry. J Proteome Res 2012, 11:476-486.
-
(2012)
J Proteome Res
, vol.11
, pp. 476-486
-
-
Martin, S.F.1
Munagapati, V.S.2
Salvo-Chirnside, E.3
Kerr, L.E.4
Le Bihan, T.5
-
28
-
-
79251539603
-
Circadian rhythms persist without transcription in a eukaryote
-
O'Neill JS, van Ooijen G, Dixon LE, Troein C, Corellou F, Bouget F-Y, Reddy AB, Millar AJ. Circadian rhythms persist without transcription in a eukaryote. Nature 2011, 469:554-558.
-
(2011)
Nature
, vol.469
, pp. 554-558
-
-
O'Neill, J.S.1
van Ooijen, G.2
Dixon, L.E.3
Troein, C.4
Corellou, F.5
Bouget, F.-Y.6
Reddy, A.B.7
Millar, A.J.8
-
29
-
-
79957491160
-
Proteasome function is required for biological timing throughout the twenty-four hour cycle
-
van Ooijen G, Dixon LE, Troein C, Millar AJ. Proteasome function is required for biological timing throughout the twenty-four hour cycle. Curr Biol 2011, 21:869-875.
-
(2011)
Curr Biol
, vol.21
, pp. 869-875
-
-
van Ooijen, G.1
Dixon, L.E.2
Troein, C.3
Millar, A.J.4
-
30
-
-
79954991675
-
Multiple light inputs to a simple clock circuit allow complex biological rhythms
-
Troein C, Corellou F, Dixon LE, van Ooijen G, O'Neill JS, Bouget F-Y, Millar AJ. Multiple light inputs to a simple clock circuit allow complex biological rhythms. Plant J 2011, 66:375-385.
-
(2011)
Plant J
, vol.66
, pp. 375-385
-
-
Troein, C.1
Corellou, F.2
Dixon, L.E.3
van Ooijen, G.4
O'Neill, J.S.5
Bouget, F.-Y.6
Millar, A.J.7
-
31
-
-
84880771691
-
Functional analysis of casein kinase 1 in a minimal circadian system
-
van Ooijen G, Hindle M, Martin SF, Barrios-Llerena M, Sanchez F, Bouget F-Y, O'Neill JS, Bihan TL, Millar AJ. Functional analysis of casein kinase 1 in a minimal circadian system. PLoS One 2013, 8:e70021.
-
(2013)
PLoS One
, vol.8
, pp. e70021
-
-
van Ooijen, G.1
Hindle, M.2
Martin, S.F.3
Barrios-Llerena, M.4
Sanchez, F.5
Bouget, F.-Y.6
O'Neill, J.S.7
Bihan, T.L.8
Millar, A.J.9
-
32
-
-
84885367660
-
Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga
-
van Ooijen G, Martin SF, Barrios-Llerena ME, Hindle M, Le Bihan T, O'Neill JS, Millar AJ. Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga. BMC Cell Biol 2013, 14:46.
-
(2013)
BMC Cell Biol
, vol.14
, pp. 46
-
-
van Ooijen, G.1
Martin, S.F.2
Barrios-Llerena, M.E.3
Hindle, M.4
Le Bihan, T.5
O'Neill, J.S.6
Millar, A.J.7
-
33
-
-
33644787447
-
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
-
Chen F, Mackey AJ, Stoeckert CJ, Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucl Acids Res 2006, 34(suppl 1):D363-D368.
-
(2006)
Nucl Acids Res
, vol.34
, pp. D363-D368
-
-
Chen, F.1
Mackey, A.J.2
Stoeckert, C.J.3
Roos, D.S.4
-
34
-
-
0035845575
-
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases
-
Shiu S-H, Bleecker AB. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. PNAS 2001, 98:10763-10768.
-
(2001)
PNAS
, vol.98
, pp. 10763-10768
-
-
Shiu, S.-H.1
Bleecker, A.B.2
-
36
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning G, Whyte DB, Martinez R, Hunter T, Sudarsanam S. The protein kinase complement of the human genome. Science 2002, 298:1912-1934.
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
37
-
-
0037251965
-
The plantsP and plantsT functional genomics databases
-
Tchieu JH, Fana F, Fink JL, Harper J, Nair TM, Niedner RH, Smith DW, Steube K, Tam TM, Veretnik S, Wang D, Gribskov M. The plantsP and plantsT functional genomics databases. Nucleic Acids Res 2003, 31:342-344.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 342-344
-
-
Tchieu, J.H.1
Fana, F.2
Fink, J.L.3
Harper, J.4
Nair, T.M.5
Niedner, R.H.6
Smith, D.W.7
Steube, K.8
Tam, T.M.9
Veretnik, S.10
Wang, D.11
Gribskov, M.12
-
38
-
-
84872816249
-
HuPho: the human phosphatase portal
-
Liberti S, Sacco F, Calderone A, Perfetto L, Iannuccelli M, Panni S, Santonico E, Palma A, Nardozza AP, Castagnoli L, Cesareni G. HuPho: the human phosphatase portal. FEBS J 2013, 280:379-387.
-
(2013)
FEBS J
, vol.280
, pp. 379-387
-
-
Liberti, S.1
Sacco, F.2
Calderone, A.3
Perfetto, L.4
Iannuccelli, M.5
Panni, S.6
Santonico, E.7
Palma, A.8
Nardozza, A.P.9
Castagnoli, L.10
Cesareni, G.11
-
39
-
-
66149113974
-
Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes
-
Lehti-Shiu MD, Zou C, Hanada K, Shiu S-H. Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Plant Physiol 2009, 150:12-26.
-
(2009)
Plant Physiol
, vol.150
, pp. 12-26
-
-
Lehti-Shiu, M.D.1
Zou, C.2
Hanada, K.3
Shiu, S.-H.4
-
40
-
-
84865071857
-
Diversity, classification and function of the plant protein kinase superfamily
-
Lehti-Shiu MD, Shiu S-H. Diversity, classification and function of the plant protein kinase superfamily. Phil Trans R Soc B 2012, 367:2619-2639.
-
(2012)
Phil Trans R Soc B
, vol.367
, pp. 2619-2639
-
-
Lehti-Shiu, M.D.1
Shiu, S.-H.2
-
41
-
-
77950388509
-
Comparative analysis of fungal protein kinases and associated domains
-
Kosti I, Mandel-Gutfreund Y, Glaser F, Horwitz BA. Comparative analysis of fungal protein kinases and associated domains. BMC Genomics 2010, 11:133.
-
(2010)
BMC Genomics
, vol.11
, pp. 133
-
-
Kosti, I.1
Mandel-Gutfreund, Y.2
Glaser, F.3
Horwitz, B.A.4
-
42
-
-
79959805550
-
Phot1 inhibition of ABCB19 primes lateral auxin fluxes in the shoot apex required for phototropism
-
Christie JM, Yang H, Richter GL, Sullivan S, Thomson CE, Lin J, Titapiwatanakun B, Ennis M, Kaiserli E, Lee OR, Adamec J, Peer WA, Murphy AS. Phot1 inhibition of ABCB19 primes lateral auxin fluxes in the shoot apex required for phototropism. PLoS Biol 2011, 9:e1001076.
-
(2011)
PLoS Biol
, vol.9
, pp. e1001076
-
-
Christie, J.M.1
Yang, H.2
Richter, G.L.3
Sullivan, S.4
Thomson, C.E.5
Lin, J.6
Titapiwatanakun, B.7
Ennis, M.8
Kaiserli, E.9
Lee, O.R.10
Adamec, J.11
Peer, W.A.12
Murphy, A.S.13
-
43
-
-
84862803103
-
Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice
-
Gao Q, Yang Z, Zhou Y, Yin Z, Qiu J, Liang G, Xu C. Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice. Gene 2012, 498:155-163.
-
(2012)
Gene
, vol.498
, pp. 155-163
-
-
Gao, Q.1
Yang, Z.2
Zhou, Y.3
Yin, Z.4
Qiu, J.5
Liang, G.6
Xu, C.7
-
44
-
-
84863711647
-
AtACDO1, an ABC1-like kinase gene, is involved in chlorophyll degradation and the response to photooxidative stress in Arabidopsis
-
Yang S, Zeng X, Li T, Liu M, Zhang S, Gao S, Wang Y, Peng C, Li L, Yang C. AtACDO1, an ABC1-like kinase gene, is involved in chlorophyll degradation and the response to photooxidative stress in Arabidopsis. J Exp Bot 2012, 63:3959-3973.
-
(2012)
J Exp Bot
, vol.63
, pp. 3959-3973
-
-
Yang, S.1
Zeng, X.2
Li, T.3
Liu, M.4
Zhang, S.5
Gao, S.6
Wang, Y.7
Peng, C.8
Li, L.9
Yang, C.10
-
45
-
-
84867807011
-
AtSIA1, an ABC1-like kinase, regulates salt response in Arabidopsis
-
Yang S. AtSIA1, an ABC1-like kinase, regulates salt response in Arabidopsis. Biologia 2012, 67:1107-1111.
-
(2012)
Biologia
, vol.67
, pp. 1107-1111
-
-
Yang, S.1
-
46
-
-
84906830431
-
Efficient gene targeting and foreign DNA removal by homologous recombination in the picoeukaryote Ostreococcus
-
Lozano J-C, Schatt P, Botebol H, Verge´ V, Lesuisse E, Blain S, Carre´ IA, Bouget F-Y. Efficient gene targeting and foreign DNA removal by homologous recombination in the picoeukaryote Ostreococcus. Plant J 2014, 76:6.
-
(2014)
Plant J
, vol.76
, pp. 6
-
-
Lozano, J.-C.1
Schatt, P.2
Botebol, H.3
Verge´, V.4
Lesuisse, E.5
Blain, S.6
Carre´, I.A.7
Bouget, F.-Y.8
-
47
-
-
84856351274
-
Evolution of the TOR pathway
-
van Dam TJP, Zwartkruis FJT, Bos JL, Snel B. Evolution of the TOR pathway. J Mol Evol 2011, 73:209-220.
-
(2011)
J Mol Evol
, vol.73
, pp. 209-220
-
-
van Dam, T.J.P.1
Zwartkruis, F.J.T.2
Bos, J.L.3
Snel, B.4
-
48
-
-
82755187773
-
Glycogen synthase kinase (GSK)-3 promotes p70 ribosomal protein S6 kinase (p70S6K) activity and cell proliferation
-
Shin S, Wolgamott L, Yu Y, Blenis J, Yoon S-O. Glycogen synthase kinase (GSK)-3 promotes p70 ribosomal protein S6 kinase (p70S6K) activity and cell proliferation. PNAS 2011, 108:E1204-E1213.
-
(2011)
PNAS
, vol.108
, pp. E1204-E1213
-
-
Shin, S.1
Wolgamott, L.2
Yu, Y.3
Blenis, J.4
Yoon, S.-O.5
-
49
-
-
77951974344
-
Dealing with DNA damage: relationships between checkpoint and repair pathways
-
Warmerdam DO, Kanaar R. Dealing with DNA damage: relationships between checkpoint and repair pathways. Mutat Res 2010, 704:2-11.
-
(2010)
Mutat Res
, vol.704
, pp. 2-11
-
-
Warmerdam, D.O.1
Kanaar, R.2
-
50
-
-
30944433261
-
The phosphoinositide-3-OH-kinase-related kinases of Arabidopsis thaliana
-
Templeton GW, Moorhead GBG. The phosphoinositide-3-OH-kinase-related kinases of Arabidopsis thaliana. EMBO Rep 2005, 6:723-728.
-
(2005)
EMBO Rep
, vol.6
, pp. 723-728
-
-
Templeton, G.W.1
Moorhead, G.B.G.2
-
51
-
-
84889096702
-
SMG1 is an ancient nonsense-mediated mRNA decay effector
-
Lloyd JPB, Davies B. SMG1 is an ancient nonsense-mediated mRNA decay effector. Plant J 2013, 76:800-810.
-
(2013)
Plant J
, vol.76
, pp. 800-810
-
-
Lloyd, J.P.B.1
Davies, B.2
-
52
-
-
0042839614
-
Mechanism and regulation of human non-homologous DNA end-joining
-
Lieber MR, Ma Y, Pannicke U, Schwarz K. Mechanism and regulation of human non-homologous DNA end-joining. Nat Rev Mol Cell Biol 2003, 4:712-720.
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 712-720
-
-
Lieber, M.R.1
Ma, Y.2
Pannicke, U.3
Schwarz, K.4
-
53
-
-
84868213765
-
Distinct roles for DNA-PK, ATM and ATR in RPA phosphorylation and checkpoint activation in response to replication stress
-
Liu S, Opiyo SO, Manthey K, Glanzer JG, Ashley AK, Amerin C, Troksa K, Shrivastav M, Nickoloff JA, Oakley GG. Distinct roles for DNA-PK, ATM and ATR in RPA phosphorylation and checkpoint activation in response to replication stress. Nucl Acids Res 2012, 40:10780-10794.
-
(2012)
Nucl Acids Res
, vol.40
, pp. 10780-10794
-
-
Liu, S.1
Opiyo, S.O.2
Manthey, K.3
Glanzer, J.G.4
Ashley, A.K.5
Amerin, C.6
Troksa, K.7
Shrivastav, M.8
Nickoloff, J.A.9
Oakley, G.G.10
-
54
-
-
0042710823
-
Plant-specific regulation of replication protein A2 (OsRPA2) from rice during the cell cycle and in response to ultraviolet light exposure
-
Marwedel T, Ishibashi T, Lorbiecke R, Jacob S, Sakaguchi K, Sauter M. Plant-specific regulation of replication protein A2 (OsRPA2) from rice during the cell cycle and in response to ultraviolet light exposure. Planta 2003, 217:457-465.
-
(2003)
Planta
, vol.217
, pp. 457-465
-
-
Marwedel, T.1
Ishibashi, T.2
Lorbiecke, R.3
Jacob, S.4
Sakaguchi, K.5
Sauter, M.6
-
55
-
-
84875224757
-
DNA-PK is a DNA sensor for IRF-3-dependent innate immunity
-
Ferguson BJ, Mansur DS, Peters NE, Ren H, Smith GL. DNA-PK is a DNA sensor for IRF-3-dependent innate immunity. ELife 2012, 1:e00047.
-
(2012)
ELife
, vol.1
, pp. e00047
-
-
Ferguson, B.J.1
Mansur, D.S.2
Peters, N.E.3
Ren, H.4
Smith, G.L.5
-
56
-
-
14544299388
-
Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri
-
Robbens S, Khadaroo B, Camasses A, Derelle E, Ferraz C, Inze´ D, van de Peer Y, Moreau H. Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Mol Biol Evol 2005, 22:589-597.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 589-597
-
-
Robbens, S.1
Khadaroo, B.2
Camasses, A.3
Derelle, E.4
Ferraz, C.5
Inze´, D.6
van de Peer, Y.7
Moreau, H.8
-
58
-
-
0029011218
-
The MAPK signaling cascade
-
Seger R, Krebs EG. The MAPK signaling cascade. FASEB J 1995, 9:726-735.
-
(1995)
FASEB J
, vol.9
, pp. 726-735
-
-
Seger, R.1
Krebs, E.G.2
-
59
-
-
34247865533
-
A chaperone-dependent GSK3beta transitional intermediate mediates activation-loop autophosphorylation
-
Lochhead PA, Kinstrie R, Sibbet G, Rawjee T, Morrice N, Cleghon V. A chaperone-dependent GSK3beta transitional intermediate mediates activation-loop autophosphorylation. Mol Cell 2006, 24:627-633.
-
(2006)
Mol Cell
, vol.24
, pp. 627-633
-
-
Lochhead, P.A.1
Kinstrie, R.2
Sibbet, G.3
Rawjee, T.4
Morrice, N.5
Cleghon, V.6
-
60
-
-
84855603860
-
Function and evolution of "green" GSK3/Shaggy-like kinases
-
Saidi Y, Hearn TJ, Coates JC. Function and evolution of "green" GSK3/Shaggy-like kinases. Trends Plant Sci 2012, 17:39-46.
-
(2012)
Trends Plant Sci
, vol.17
, pp. 39-46
-
-
Saidi, Y.1
Hearn, T.J.2
Coates, J.C.3
-
61
-
-
0034817255
-
The Hsp90 family of proteins in Arabidopsis thaliana
-
Krishna P, Gloor G. The Hsp90 family of proteins in Arabidopsis thaliana. Cell Stress Chaperones 2001, 6:238-246.
-
(2001)
Cell Stress Chaperones
, vol.6
, pp. 238-246
-
-
Krishna, P.1
Gloor, G.2
-
63
-
-
84879474904
-
Evolutionary adaptations of plant AGC kinases: from light signaling to cell polarity regulation
-
Rademacher EH, Offringa R. Evolutionary adaptations of plant AGC kinases: from light signaling to cell polarity regulation. Front Plant Sci 2012, 3:250.
-
(2012)
Front Plant Sci
, vol.3
, pp. 250
-
-
Rademacher, E.H.1
Offringa, R.2
-
64
-
-
1342342993
-
PDK1, the master regulator of AGC kinase signal transduction
-
Mora A, Komander D, van Aalten DMF, Alessi DR. PDK1, the master regulator of AGC kinase signal transduction. Semin Cell Dev Biol 2004, 15:161-170.
-
(2004)
Semin Cell Dev Biol
, vol.15
, pp. 161-170
-
-
Mora, A.1
Komander, D.2
van Aalten, D.M.F.3
Alessi, D.R.4
-
65
-
-
0035882103
-
The PIF-binding pocket in PDK1 is essential for activation of S6K and SGK, but not PKB
-
Biondi RM, Kieloch A, Currie RA, Deak M, Alessi DR. The PIF-binding pocket in PDK1 is essential for activation of S6K and SGK, but not PKB. EMBO J 2001, 20:4380-4390.
-
(2001)
EMBO J
, vol.20
, pp. 4380-4390
-
-
Biondi, R.M.1
Kieloch, A.2
Currie, R.A.3
Deak, M.4
Alessi, D.R.5
-
66
-
-
80052446199
-
Crystal structure of cGMP-dependent protein kinase reveals novel site of interchain communication
-
Osborne BW, Wu J, McFarland CJ, Nickl CK, Sankaran B, Casteel DE, Woods VL, Kornev AP, Taylor SS, Dostmann WR. Crystal structure of cGMP-dependent protein kinase reveals novel site of interchain communication. Structure 2011, 19:1317-1327.
-
(2011)
Structure
, vol.19
, pp. 1317-1327
-
-
Osborne, B.W.1
Wu, J.2
McFarland, C.J.3
Nickl, C.K.4
Sankaran, B.5
Casteel, D.E.6
Woods, V.L.7
Kornev, A.P.8
Taylor, S.S.9
Dostmann, W.R.10
-
67
-
-
84866729606
-
Assembly of allosteric macromolecular switches: lessons from PKA
-
Taylor SS, Ilouz R, Zhang P, Kornev AP. Assembly of allosteric macromolecular switches: lessons from PKA. Nat Rev Mol Cell Biol 2012, 13:646-658.
-
(2012)
Nat Rev Mol Cell Biol
, vol.13
, pp. 646-658
-
-
Taylor, S.S.1
Ilouz, R.2
Zhang, P.3
Kornev, A.P.4
-
68
-
-
0033605139
-
PrKX is a novel catalytic subunit of the cAMP-dependent protein kinase regulated by the regulatory subunit type I
-
Zimmermann B, Chiorini JA, Ma Y, Kotin RM, Herberg FW. PrKX is a novel catalytic subunit of the cAMP-dependent protein kinase regulated by the regulatory subunit type I. J Biol Chem 1999, 274:5370-5378.
-
(1999)
J Biol Chem
, vol.274
, pp. 5370-5378
-
-
Zimmermann, B.1
Chiorini, J.A.2
Ma, Y.3
Kotin, R.M.4
Herberg, F.W.5
-
69
-
-
2942598149
-
PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation
-
Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B. PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 2004, 4:1551-1561.
-
(2004)
Proteomics
, vol.4
, pp. 1551-1561
-
-
Hornbeck, P.V.1
Chabra, I.2
Kornhauser, J.M.3
Skrzypek, E.4
Zhang, B.5
-
70
-
-
32044465506
-
TOR signaling in growth and metabolism
-
Wullschleger S, Loewith R, Hall MN. TOR signaling in growth and metabolism. Cell 2006, 124:471-484.
-
(2006)
Cell
, vol.124
, pp. 471-484
-
-
Wullschleger, S.1
Loewith, R.2
Hall, M.N.3
-
71
-
-
84856068242
-
Rapamycin and glucose-target of rapamycin (TOR) protein signaling in plants
-
Xiong Y, Sheen J. Rapamycin and glucose-target of rapamycin (TOR) protein signaling in plants. J Biol Chem 2012, 287:2836-2842.
-
(2012)
J Biol Chem
, vol.287
, pp. 2836-2842
-
-
Xiong, Y.1
Sheen, J.2
-
72
-
-
77954950481
-
9 - TORC1 Signaling in Budding Yeast
-
Fuyuhiko Tamanoi: Academic Press, Michael Hall N
-
Loewith R. 9 - TORC1 Signaling in Budding Yeast. The Enzymes. Volume 27 2010, 147-175. Fuyuhiko Tamanoi: Academic Press, Michael Hall N.
-
(2010)
The Enzymes. Volume 27
, pp. 147-175
-
-
Loewith, R.1
-
73
-
-
70449900928
-
TOR complex 2: a signaling pathway of its own
-
Cybulski N, Hall MN. TOR complex 2: a signaling pathway of its own. Trends Biochem Sci 2009, 34:620-627.
-
(2009)
Trends Biochem Sci
, vol.34
, pp. 620-627
-
-
Cybulski, N.1
Hall, M.N.2
-
74
-
-
0032518467
-
3-Phosphoinositide-dependent protein kinase 1 (PDK1) phosphorylates and activates the p70 S6 kinase in vivo and in vitro
-
Alessi DR, Kozlowski MT, Weng QP, Morrice N, Avruch J. 3-Phosphoinositide-dependent protein kinase 1 (PDK1) phosphorylates and activates the p70 S6 kinase in vivo and in vitro. Curr Biol 1998, 8:69-81.
-
(1998)
Curr Biol
, vol.8
, pp. 69-81
-
-
Alessi, D.R.1
Kozlowski, M.T.2
Weng, Q.P.3
Morrice, N.4
Avruch, J.5
-
75
-
-
0032578998
-
Phosphorylation and activation of p70s6k by PDK1
-
Pullen N, Dennis PB, Andjelkovic M, Dufner A, Kozma SC, Hemmings BA, Thomas G. Phosphorylation and activation of p70s6k by PDK1. Science 1998, 279:707-710.
-
(1998)
Science
, vol.279
, pp. 707-710
-
-
Pullen, N.1
Dennis, P.B.2
Andjelkovic, M.3
Dufner, A.4
Kozma, S.C.5
Hemmings, B.A.6
Thomas, G.7
-
76
-
-
0032539664
-
RAFT1 phosphorylation of the translational regulators p70 S6 kinase and 4E-BP1
-
Burnett PE, Barrow RK, Cohen NA, Snyder SH, Sabatini DM. RAFT1 phosphorylation of the translational regulators p70 S6 kinase and 4E-BP1. Proc Natl Acad Sci U S A 1998, 95:1432-1437.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 1432-1437
-
-
Burnett, P.E.1
Barrow, R.K.2
Cohen, N.A.3
Snyder, S.H.4
Sabatini, D.M.5
-
77
-
-
0030848939
-
Dual requirement for a newly identified phosphorylation site in p70s6k
-
Moser BA, Dennis PB, Pullen N, Pearson RB, Williamson NA, Wettenhall RE, Kozma SC, Thomas G. Dual requirement for a newly identified phosphorylation site in p70s6k. Mol Cell Biol 1997, 17:5648-5655.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 5648-5655
-
-
Moser, B.A.1
Dennis, P.B.2
Pullen, N.3
Pearson, R.B.4
Williamson, N.A.5
Wettenhall, R.E.6
Kozma, S.C.7
Thomas, G.8
-
78
-
-
0033199841
-
Phosphorylation of Ser-241 is essential for the activity of 3-phosphoinositide-dependent protein kinase-1: identification of five sites of phosphorylation in vivo
-
Casamayor A, Morrice NA, Alessi DR. Phosphorylation of Ser-241 is essential for the activity of 3-phosphoinositide-dependent protein kinase-1: identification of five sites of phosphorylation in vivo. Biochem J 1999, 342(Pt 2):287-292.
-
(1999)
Biochem J
, vol.342
, pp. 287-292
-
-
Casamayor, A.1
Morrice, N.A.2
Alessi, D.R.3
-
79
-
-
0037131334
-
Regulation of kinase activity of 3-phosphoinositide-dependent protein kinase-1 by binding to 14-3-3
-
Sato S, Fujita N, Tsuruo T. Regulation of kinase activity of 3-phosphoinositide-dependent protein kinase-1 by binding to 14-3-3. J Biol Chem 2002, 277:39360-39367.
-
(2002)
J Biol Chem
, vol.277
, pp. 39360-39367
-
-
Sato, S.1
Fujita, N.2
Tsuruo, T.3
-
80
-
-
27944490897
-
Arabidopsis PDK1: identification of sites important for activity and downstream phosphorylation of S6 kinase
-
Otterhag L, Gustavsson N, Alsterfjord M, Pical C, Lehrach H, Gobom J, Sommarin M. Arabidopsis PDK1: identification of sites important for activity and downstream phosphorylation of S6 kinase. Biochimie 2006, 88:11-21.
-
(2006)
Biochimie
, vol.88
, pp. 11-21
-
-
Otterhag, L.1
Gustavsson, N.2
Alsterfjord, M.3
Pical, C.4
Lehrach, H.5
Gobom, J.6
Sommarin, M.7
-
81
-
-
0033577745
-
Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast
-
Jiang Y, Broach JR. Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast. EMBO J 1999, 18:2782-2792.
-
(1999)
EMBO J
, vol.18
, pp. 2782-2792
-
-
Jiang, Y.1
Broach, J.R.2
-
82
-
-
0033551234
-
Protein phosphatase 2A interacts with the 70-kDa S6 kinase and is activated by inhibition of FKBP12-rapamycinassociated protein
-
Peterson RT, Desai BN, Hardwick JS, Schreiber SL. Protein phosphatase 2A interacts with the 70-kDa S6 kinase and is activated by inhibition of FKBP12-rapamycinassociated protein. PNAS 1999, 96:4438-4442.
-
(1999)
PNAS
, vol.96
, pp. 4438-4442
-
-
Peterson, R.T.1
Desai, B.N.2
Hardwick, J.S.3
Schreiber, S.L.4
-
83
-
-
22144461779
-
The phosphatase subunit tap42 functions independently of target of rapamycin to regulate cell division and survival in Drosophila
-
Cygnar KD, Gao X, Pan D, Neufeld TP. The phosphatase subunit tap42 functions independently of target of rapamycin to regulate cell division and survival in Drosophila. Genetics 2005, 170:733-740.
-
(2005)
Genetics
, vol.170
, pp. 733-740
-
-
Cygnar, K.D.1
Gao, X.2
Pan, D.3
Neufeld, T.P.4
-
84
-
-
0038377588
-
The Arabidopsis CDPK-SnRK superfamily of protein kinases
-
Hrabak EM, Chan CWM, Gribskov M, Harper JF, Choi JH, Halford N, Kudla J, Luan S, Nimmo HG, Sussman MR, Thomas M, Walker-Simmons K, Zhu J-K, Harmon AC. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol 2003, 132:666-680.
-
(2003)
Plant Physiol
, vol.132
, pp. 666-680
-
-
Hrabak, E.M.1
Chan, C.W.M.2
Gribskov, M.3
Harper, J.F.4
Choi, J.H.5
Halford, N.6
Kudla, J.7
Luan, S.8
Nimmo, H.G.9
Sussman, M.R.10
Thomas, M.11
Walker-Simmons, K.12
Zhu, J.-K.13
Harmon, A.C.14
-
85
-
-
34447308527
-
Structure and functions of plant calcium-dependent protein kinases
-
Klimecka M, Muszyn´ska G. Structure and functions of plant calcium-dependent protein kinases. Acta Biochim Pol 2007, 54:219-233.
-
(2007)
Acta Biochim Pol
, vol.54
, pp. 219-233
-
-
Klimecka, M.1
Muszyn´ska, G.2
-
86
-
-
80255127530
-
The AMPK/SNF1/SnRK1 fuel gauge and energy regulator: structure, function and regulation
-
Ghillebert R, Swinnen E, Wen J, Vandesteene L, Ramon M, Norga K, Rolland F, Winderickx J. The AMPK/SNF1/SnRK1 fuel gauge and energy regulator: structure, function and regulation. FEBS J 2011, 278:3978-3990.
-
(2011)
FEBS J
, vol.278
, pp. 3978-3990
-
-
Ghillebert, R.1
Swinnen, E.2
Wen, J.3
Vandesteene, L.4
Ramon, M.5
Norga, K.6
Rolland, F.7
Winderickx, J.8
-
87
-
-
73149091660
-
Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator
-
Usaite R, Jewett MC, Oliveira AP, Yates JR, Olsson L, Nielsen J. Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. Mol Syst Biol 2009, 5:319.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 319
-
-
Usaite, R.1
Jewett, M.C.2
Oliveira, A.P.3
Yates, J.R.4
Olsson, L.5
Nielsen, J.6
-
88
-
-
33846290287
-
SNF1/AMPK/SnRK1 kinases, global regulators at the heart of energy control?
-
Polge C, Thomas M. SNF1/AMPK/SnRK1 kinases, global regulators at the heart of energy control?. Trends Plant Sci 2007, 12:20-28.
-
(2007)
Trends Plant Sci
, vol.12
, pp. 20-28
-
-
Polge, C.1
Thomas, M.2
-
89
-
-
84893683325
-
Ancient signals: comparative genomics of green plant CDPKs
-
Hamel L-P, Sheen J, Se´guin A. Ancient signals: comparative genomics of green plant CDPKs. Trends Plant Sci 2013, 19:79-89.
-
(2013)
Trends Plant Sci
, vol.19
, pp. 79-89
-
-
Hamel, L.-P.1
Sheen, J.2
Se´guin, A.3
-
90
-
-
77955475926
-
Regulation of Arabidopsis defense responses against Spodoptera littoralis by CPK-mediated calcium signaling
-
Kanchiswamy CN, Takahashi H, Quadro S, Maffei ME, Bossi S, Bertea C, Zebelo SA, Muroi A, Ishihama N, Yoshioka H, Boland W, Takabayashi J, Endo Y, Sawasaki T, Arimura G. Regulation of Arabidopsis defense responses against Spodoptera littoralis by CPK-mediated calcium signaling. BMC Plant Biology 2010, 10:97.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 97
-
-
Kanchiswamy, C.N.1
Takahashi, H.2
Quadro, S.3
Maffei, M.E.4
Bossi, S.5
Bertea, C.6
Zebelo, S.A.7
Muroi, A.8
Ishihama, N.9
Yoshioka, H.10
Boland, W.11
Takabayashi, J.12
Endo, Y.13
Sawasaki, T.14
Arimura, G.15
-
91
-
-
33750239010
-
CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca2 + - permeable channels and stomatal closure
-
Mori IC, Murata Y, Yang Y, Munemasa S, Wang Y-F, Andreoli S, Tiriac H, Alonso JM, Harper JF, Ecker JR, Kwak JM, Schroeder JI. CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca2 + - permeable channels and stomatal closure. PLoS Biol 2006, 4:e327.
-
(2006)
PLoS Biol
, vol.4
, pp. e327
-
-
Mori, I.C.1
Murata, Y.2
Yang, Y.3
Munemasa, S.4
Wang, Y.-F.5
Andreoli, S.6
Tiriac, H.7
Alonso, J.M.8
Harper, J.F.9
Ecker, J.R.10
Kwak, J.M.11
Schroeder, J.I.12
-
92
-
-
78650996727
-
The Arabidopsis calcium-dependent protein kinase, CPK6, functions as a positive regulator of methyl jasmonate signaling in guard cells
-
Munemasa S, Hossain MA, Nakamura Y, Mori IC, Murata Y. The Arabidopsis calcium-dependent protein kinase, CPK6, functions as a positive regulator of methyl jasmonate signaling in guard cells. Plant Physiol 2011, 155:553-561.
-
(2011)
Plant Physiol
, vol.155
, pp. 553-561
-
-
Munemasa, S.1
Hossain, M.A.2
Nakamura, Y.3
Mori, I.C.4
Murata, Y.5
-
93
-
-
37249078174
-
Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis
-
Zhu S-Y, Yu X-C, Wang X-J, Zhao R, Li Y, Fan R-C, Shang Y, Du S-Y, Wang X-F, Wu F-Q, Xu Y-H, Zhang X-Y, Zhang D-P. Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis. Plant Cell 2007, 19:3019-3036.
-
(2007)
Plant Cell
, vol.19
, pp. 3019-3036
-
-
Zhu, S.-Y.1
Yu, X.-C.2
Wang, X.-J.3
Zhao, R.4
Li, Y.5
Fan, R.-C.6
Shang, Y.7
Du, S.-Y.8
Wang, X.-F.9
Wu, F.-Q.10
Xu, Y.-H.11
Zhang, X.-Y.12
Zhang, D.-P.13
-
94
-
-
84875193264
-
Brassinosteroid-regulated GSK3/shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana
-
Khan M, Rozhon W, Bigeard J, Pflieger D, Husar S, Pitzschke A, Teige M, Jonak C, Hirt H, Poppenberger B. Brassinosteroid-regulated GSK3/shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana. J Biol Chem 2013, 288:7519-7527.
-
(2013)
J Biol Chem
, vol.288
, pp. 7519-7527
-
-
Khan, M.1
Rozhon, W.2
Bigeard, J.3
Pflieger, D.4
Husar, S.5
Pitzschke, A.6
Teige, M.7
Jonak, C.8
Hirt, H.9
Poppenberger, B.10
-
95
-
-
84862777850
-
Brassinosteroid regulates stomatal development by GSK3-mediated inhibition of a MAPK pathway
-
Kim T-W, Michniewicz M, Bergmann DC, Wang Z-Y. Brassinosteroid regulates stomatal development by GSK3-mediated inhibition of a MAPK pathway. Nature 2012, 482:419-422.
-
(2012)
Nature
, vol.482
, pp. 419-422
-
-
Kim, T.-W.1
Michniewicz, M.2
Bergmann, D.C.3
Wang, Z.-Y.4
-
96
-
-
1542320494
-
Reassessing the MAP3K and MAP4K relationships
-
Champion A, Picaud A, Henry Y. Reassessing the MAP3K and MAP4K relationships. Trends Plant Sci 2004, 9:123-129.
-
(2004)
Trends Plant Sci
, vol.9
, pp. 123-129
-
-
Champion, A.1
Picaud, A.2
Henry, Y.3
-
97
-
-
0037266972
-
Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis
-
Huang Y, Li H, Hutchison CE, Laskey J, Kieber JJ. Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis. Plant J 2003, 33:221-233.
-
(2003)
Plant J
, vol.33
, pp. 221-233
-
-
Huang, Y.1
Li, H.2
Hutchison, C.E.3
Laskey, J.4
Kieber, J.J.5
-
98
-
-
77955608570
-
TOR is a negative regulator of autophagy in Arabidopsis thaliana
-
Liu Y, Bassham DC. TOR is a negative regulator of autophagy in Arabidopsis thaliana. PLoS One 2010, 5:e11883.
-
(2010)
PLoS One
, vol.5
, pp. e11883
-
-
Liu, Y.1
Bassham, D.C.2
-
99
-
-
53549113031
-
The role of TOR in autophagy regulation from yeast to plants and mammals
-
Di´az-Troya S, Pe´rez-Pe´rez ME, Florencio FJ, Crespo JL. The role of TOR in autophagy regulation from yeast to plants and mammals. Autophagy 2008, 4:851-865.
-
(2008)
Autophagy
, vol.4
, pp. 851-865
-
-
Di´az-Troya, S.1
Pe´rez-Pe´rez, M.E.2
Florencio, F.J.3
Crespo, J.L.4
-
100
-
-
38649142482
-
Regulation of MAPK Signaling in Yeast
-
Berlin: Springer, Posas F, Nebreda AR
-
Rudolf F, Pelet S, Peter M. Regulation of MAPK Signaling in Yeast. Stress-Activated Protein Kinases, 20 2008, 187-204. Berlin: Springer, Posas F, Nebreda AR.
-
(2008)
Stress-Activated Protein Kinases, 20
, pp. 187-204
-
-
Rudolf, F.1
Pelet, S.2
Peter, M.3
-
101
-
-
0028329630
-
Activation of MEK family kinases requires phosphorylation of two conserved Ser/Thr residues
-
Zheng CF, Guan KL. Activation of MEK family kinases requires phosphorylation of two conserved Ser/Thr residues. EMBO J 1994, 13:1123-1131.
-
(1994)
EMBO J
, vol.13
, pp. 1123-1131
-
-
Zheng, C.F.1
Guan, K.L.2
-
102
-
-
70349652000
-
Brassinosteroid signal transduction from cell surface receptor kinases to nuclear transcription factors
-
Kim T-W, Guan S, Sun Y, Deng Z, Tang W, Shang J-X, Sun Y, Burlingame AL, Wang Z-Y. Brassinosteroid signal transduction from cell surface receptor kinases to nuclear transcription factors. Nat Cell Biol 2009, 11:1254-1260.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 1254-1260
-
-
Kim, T.-W.1
Guan, S.2
Sun, Y.3
Deng, Z.4
Tang, W.5
Shang, J.-X.6
Sun, Y.7
Burlingame, A.L.8
Wang, Z.-Y.9
-
103
-
-
84857952188
-
The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
-
Pokhilko A, Ferna´ndez AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Mol Syst Biol 2012, 8:574.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 574
-
-
Pokhilko, A.1
Ferna´ndez, A.P.2
Edwards, K.D.3
Southern, M.M.4
Halliday, K.J.5
Millar, A.J.6
-
105
-
-
17144457602
-
Interaction of casein kinase 1 delta (CK1delta) with post-Golgi structures, microtubules and the spindle apparatus
-
Behrend L, Sto¨ter M, Kurth M, Rutter G, Heukeshoven J, Deppert W, Knippschild U. Interaction of casein kinase 1 delta (CK1delta) with post-Golgi structures, microtubules and the spindle apparatus. Eur J Cell Biol 2000, 79:240-251.
-
(2000)
Eur J Cell Biol
, vol.79
, pp. 240-251
-
-
Behrend, L.1
Sto¨ter, M.2
Kurth, M.3
Rutter, G.4
Heukeshoven, J.5
Deppert, W.6
Knippschild, U.7
-
106
-
-
57749105199
-
Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules
-
Ben-Nissan G, Cui W, Kim D-J, Yang Y, Yoo B-C, Lee J-Y. Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules. Plant Physiol 2008, 148:1897-1907.
-
(2008)
Plant Physiol
, vol.148
, pp. 1897-1907
-
-
Ben-Nissan, G.1
Cui, W.2
Kim, D.-J.3
Yang, Y.4
Yoo, B.-C.5
Lee, J.-Y.6
-
107
-
-
78650432933
-
High-throughput chemical screen identifies a novel potent modulator of cellular circadian rhythms and reveals CKIα as a clock regulatory kinase
-
Hirota T, Lee JW, Lewis WG, Zhang EE, Breton G, Liu X, Garcia M, Peters EC, Etchegaray J-P, Traver D, Schultz PG, Kay SA. High-throughput chemical screen identifies a novel potent modulator of cellular circadian rhythms and reveals CKIα as a clock regulatory kinase. PLoS Biol 2010, 8:e1000559.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000559
-
-
Hirota, T.1
Lee, J.W.2
Lewis, W.G.3
Zhang, E.E.4
Breton, G.5
Liu, X.6
Garcia, M.7
Peters, E.C.8
Etchegaray, J.-P.9
Traver, D.10
Schultz, P.G.11
Kay, S.A.12
-
108
-
-
67650896079
-
Versatile casein kinase 1
-
Lee J-Y. Versatile casein kinase 1. Plant Signal Behav 2009, 4:652-654.
-
(2009)
Plant Signal Behav
, vol.4
, pp. 652-654
-
-
Lee, J.-Y.1
-
109
-
-
79961004102
-
Kinetics of doubletime kinase-dependent degradation of the Drosophila period protein
-
Syed S, Saez L, Young MW. Kinetics of doubletime kinase-dependent degradation of the Drosophila period protein. J Biol Chem 2011, jbc.M111.243618.
-
(2011)
J Biol Chem
-
-
Syed, S.1
Saez, L.2
Young, M.W.3
-
110
-
-
80052238651
-
Circadian conformational change of the Neurospora clock protein FREQUENCY triggered by clustered hyperphosphorylation of a basic domain
-
Querfurth C, Diernfellner ACR, Gin E, Malzahn E, Ho¨fer T, Brunner M. Circadian conformational change of the Neurospora clock protein FREQUENCY triggered by clustered hyperphosphorylation of a basic domain. Mol Cell 2011, 43:713-722.
-
(2011)
Mol Cell
, vol.43
, pp. 713-722
-
-
Querfurth, C.1
Diernfellner, A.C.R.2
Gin, E.3
Malzahn, E.4
Ho¨fer, T.5
Brunner, M.6
-
111
-
-
84867310470
-
The revised classification of eukaryotes
-
Adl SM, Simpson AGB, Lane CE, Lukesˇ J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, McManus H, Mitchell EAD, Mozley-Stanridge SE, Parfrey LW, Pawlowski J, Rueckert S, Shadwick RS, Shadwick L, Schoch CL, Smirnov A, Spiegel FW. The revised classification of eukaryotes. J Eukaryot Microbiol 2012, 59:429-493.
-
(2012)
J Eukaryot Microbiol
, vol.59
, pp. 429-493
-
-
Adl, S.M.1
Simpson, A.G.B.2
Lane, C.E.3
Lukesˇ, J.4
Bass, D.5
Bowser, S.S.6
Brown, M.W.7
Burki, F.8
Dunthorn, M.9
Hampl, V.10
Heiss, A.11
Hoppenrath, M.12
Lara, E.13
Le Gall, L.14
Lynn, D.H.15
McManus, H.16
Mitchell, E.A.D.17
Mozley-Stanridge, S.E.18
Parfrey, L.W.19
Pawlowski, J.20
Rueckert, S.21
Shadwick, R.S.22
Shadwick, L.23
Schoch, C.L.24
Smirnov, A.25
Spiegel, F.W.26
more..
-
112
-
-
0037334895
-
One-thousand-and-one substrates of protein kinase CK2?
-
Meggio F, Pinna LA. One-thousand-and-one substrates of protein kinase CK2?. FASEB J 2003, 17:349-368.
-
(2003)
FASEB J
, vol.17
, pp. 349-368
-
-
Meggio, F.1
Pinna, L.A.2
-
113
-
-
84867905300
-
Non-transcriptional oscillators in circadian timekeeping
-
van Ooijen G, Millar AJ. Non-transcriptional oscillators in circadian timekeeping. Trends Biochem Sci 2012, 37:484-492.
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 484-492
-
-
van Ooijen, G.1
Millar, A.J.2
-
114
-
-
80455140318
-
A role for protein kinase CK2 alpha subunits in the Arabidopsis circadian clock
-
Lu SX, Liu H, Knowles SM, Li J, Ma L, Tobin EM, Lin C. A role for protein kinase CK2 alpha subunits in the Arabidopsis circadian clock. Plant Physiol 2011
-
(2011)
Plant Physiol
-
-
Lu, S.X.1
Liu, H.2
Knowles, S.M.3
Li, J.4
Ma, L.5
Tobin, E.M.6
Lin, C.7
-
115
-
-
0032167765
-
Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein
-
Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM. Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein. Proc Natl Acad Sci U S A 1998, 95:11020-11025.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 11020-11025
-
-
Sugano, S.1
Andronis, C.2
Green, R.M.3
Wang, Z.Y.4
Tobin, E.M.5
-
116
-
-
0033607215
-
The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis
-
Sugano S, Andronis C, Ong MS, Green RM, Tobin EM. The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis. PNAS 1999, 96:12362-12366.
-
(1999)
PNAS
, vol.96
, pp. 12362-12366
-
-
Sugano, S.1
Andronis, C.2
Ong, M.S.3
Green, R.M.4
Tobin, E.M.5
-
117
-
-
65549088967
-
A role for casein kinase 2 in the mechanism underlying circadian temperature compensation
-
Mehra A, Shi M, Baker CL, Colot HV, Loros JJ, Dunlap JC. A role for casein kinase 2 in the mechanism underlying circadian temperature compensation. Cell 2009, 137:749-760.
-
(2009)
Cell
, vol.137
, pp. 749-760
-
-
Mehra, A.1
Shi, M.2
Baker, C.L.3
Colot, H.V.4
Loros, J.J.5
Dunlap, J.C.6
-
118
-
-
78649714225
-
The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis
-
Portole´s S, Ma´s P. The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis. PLoS Genet 2010, 6:e1001201.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001201
-
-
Portole´s, S.1
Ma´s, P.2
-
119
-
-
0037180767
-
A role for casein kinase 2α in the Drosophila circadian clock
-
Lin J-M, Kilman VL, Keegan K, Paddock B, Emery-Le M, Rosbash M, Allada R. A role for casein kinase 2α in the Drosophila circadian clock. Nature 2002, 420:816-820.
-
(2002)
Nature
, vol.420
, pp. 816-820
-
-
Lin, J.-M.1
Kilman, V.L.2
Keegan, K.3
Paddock, B.4
Emery-Le, M.5
Rosbash, M.6
Allada, R.7
-
120
-
-
0344091557
-
A role for CK2 in the Drosophila circadian oscillator
-
Akten B, Jauch E, Genova GK, Kim EY, Edery I, Raabe T, Jackson FR. A role for CK2 in the Drosophila circadian oscillator. Nat Neurosci 2003, 6:251-257.
-
(2003)
Nat Neurosci
, vol.6
, pp. 251-257
-
-
Akten, B.1
Jauch, E.2
Genova, G.K.3
Kim, E.Y.4
Edery, I.5
Raabe, T.6
Jackson, F.R.7
-
121
-
-
63049126277
-
A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock
-
Maier B, Wendt S, Vanselow JT, Wallach T, Reischl S, Oehmke S, Schlosser A, Kramer A. A large-scale functional RNAi screen reveals a role for CK2 in the mammalian circadian clock. Genes Dev 2009, 23:708-718.
-
(2009)
Genes Dev
, vol.23
, pp. 708-718
-
-
Maier, B.1
Wendt, S.2
Vanselow, J.T.3
Wallach, T.4
Reischl, S.5
Oehmke, S.6
Schlosser, A.7
Kramer, A.8
-
122
-
-
0034697099
-
Positional syntenic cloning and functional characterization of the mammalian circadian mutation tau
-
Lowrey PL, Shimomura K, Antoch MP, Yamazaki S, Zemenides PD, Ralph MR, Menaker M, Takahashi JS. Positional syntenic cloning and functional characterization of the mammalian circadian mutation tau. Science 2000, 288:483-491.
-
(2000)
Science
, vol.288
, pp. 483-491
-
-
Lowrey, P.L.1
Shimomura, K.2
Antoch, M.P.3
Yamazaki, S.4
Zemenides, P.D.5
Ralph, M.R.6
Menaker, M.7
Takahashi, J.S.8
-
123
-
-
33746041826
-
An opposite role for tau in circadian rhythms revealed by mathematical modeling
-
Gallego M, Eide EJ, Woolf MF, Virshup DM, Forger DB. An opposite role for tau in circadian rhythms revealed by mathematical modeling. Proc Natl Acad Sci U S A 2006, 103:10618-10623.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 10618-10623
-
-
Gallego, M.1
Eide, E.J.2
Woolf, M.F.3
Virshup, D.M.4
Forger, D.B.5
-
124
-
-
0032872087
-
Familial advanced sleep-phase syndrome: A short-period circadian rhythm variant in humans
-
Jones CR, Campbell SS, Zone SE, Cooper F, DeSano A, Murphy PJ, Jones B, Czajkowski L, Pta´cek LJ. Familial advanced sleep-phase syndrome: A short-period circadian rhythm variant in humans. Nat Med 1999, 5:1062-1065.
-
(1999)
Nat Med
, vol.5
, pp. 1062-1065
-
-
Jones, C.R.1
Campbell, S.S.2
Zone, S.E.3
Cooper, F.4
DeSano, A.5
Murphy, P.J.6
Jones, B.7
Czajkowski, L.8
Pta´cek, L.J.9
-
125
-
-
0035136677
-
An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome
-
Toh KL, Jones CR, He Y, Eide EJ, Hinz WA, Virshup DM, Pta´cek LJ, Fu YH. An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome. Science 2001, 291:1040-1043.
-
(2001)
Science
, vol.291
, pp. 1040-1043
-
-
Toh, K.L.1
Jones, C.R.2
He, Y.3
Eide, E.J.4
Hinz, W.A.5
Virshup, D.M.6
Pta´cek, L.J.7
Fu, Y.H.8
-
126
-
-
15844420887
-
Functional consequences of a CKIdelta mutation causing familial advanced sleep phase syndrome
-
Xu Y, Padiath QS, Shapiro RE, Jones CR, Wu SC, Saigoh N, Saigoh K, Pta´cek LJ, Fu Y-H. Functional consequences of a CKIdelta mutation causing familial advanced sleep phase syndrome. Nature 2005, 434:640-644.
-
(2005)
Nature
, vol.434
, pp. 640-644
-
-
Xu, Y.1
Padiath, Q.S.2
Shapiro, R.E.3
Jones, C.R.4
Wu, S.C.5
Saigoh, N.6
Saigoh, K.7
Pta´cek, L.J.8
Fu, Y.-H.9
-
127
-
-
20044378881
-
The first green lineage cdc25 dual-specificity phosphatase
-
Khadaroo B, Robbens S, Ferraz C, Derelle E, Eychenie´ S, Cooke R, Peaucellier G, Delseny M, Demaille J, van de Peer Y, Picard A, Moreau H. The first green lineage cdc25 dual-specificity phosphatase. Cell Cycle 2004, 3:513-518.
-
(2004)
Cell Cycle
, vol.3
, pp. 513-518
-
-
Khadaroo, B.1
Robbens, S.2
Ferraz, C.3
Derelle, E.4
Eychenie´, S.5
Cooke, R.6
Peaucellier, G.7
Delseny, M.8
Demaille, J.9
van de Peer, Y.10
Picard, A.11
Moreau, H.12
-
128
-
-
84904010850
-
Using OrthoMCL to Assign Proteins to OrthoMCL-DB Groups or to Cluster Proteomes Into New Ortholog Groups
-
Hoboken: John Wiley & Sons, Inc, Bateman A, Pearson WR, Stein LD, Stormo GD, Yates JR
-
Fischer S, Brunk BP, Chen F, Gao X, Harb OS, Iodice JB, Shanmugam D, Roos DS, Stoeckert CJ. Using OrthoMCL to Assign Proteins to OrthoMCL-DB Groups or to Cluster Proteomes Into New Ortholog Groups. Current Protocols in Bioinformatics 2002, Hoboken: John Wiley & Sons, Inc, Bateman A, Pearson WR, Stein LD, Stormo GD, Yates JR.
-
(2002)
Current Protocols in Bioinformatics
-
-
Fischer, S.1
Brunk, B.P.2
Chen, F.3
Gao, X.4
Harb, O.S.5
Iodice, J.B.6
Shanmugam, D.7
Roos, D.S.8
Stoeckert, C.J.9
-
129
-
-
59949096873
-
EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 2009, 19:327-335.
-
(2009)
Genome Res
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
Birney, E.6
-
130
-
-
13244252316
-
Visualization of comparative genomic analyses by BLAST score ratio
-
Rasko DA, Myers GS, Ravel J. Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics 2005, 6:2.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 2
-
-
Rasko, D.A.1
Myers, G.S.2
Ravel, J.3
-
131
-
-
80055082271
-
Accelerated Profile HMM Searches
-
Eddy SR. Accelerated Profile HMM Searches. PLoS Comput Biol 2011, 7:e1002195.
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002195
-
-
Eddy, S.R.1
-
132
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer ELL, Eddy SR, Bateman A. The Pfam protein families database. Nucl Acids Res 2010, 38(Suppl 1):D211-D222.
-
(2010)
Nucl Acids Res
, vol.38
, pp. D211-D222
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.L.12
Eddy, S.R.13
Bateman, A.14
-
133
-
-
0031026008
-
The protein kinases of budding yeast: six score and more
-
Hunter T, Plowman GD. The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997, 22:18-22.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 18-22
-
-
Hunter, T.1
Plowman, G.D.2
-
134
-
-
77955019084
-
Parallelization of the MAFFT multiple sequence alignment program
-
Katoh K, Toh H. Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 2010, 26:1899-1900.
-
(2010)
Bioinformatics
, vol.26
, pp. 1899-1900
-
-
Katoh, K.1
Toh, H.2
-
135
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25:1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
136
-
-
79960140180
-
Java bioinformatics analysis web services for multiple sequence alignment-JABAWS:MSA
-
Troshin PV, Procter JB, Barton GJ. Java bioinformatics analysis web services for multiple sequence alignment-JABAWS:MSA. Bioinformatics 2011, 27:2001-2002.
-
(2011)
Bioinformatics
, vol.27
, pp. 2001-2002
-
-
Troshin, P.V.1
Procter, J.B.2
Barton, G.J.3
-
137
-
-
77954288890
-
An alignment confidence score capturing robustness to guide tree uncertainty
-
Penn O, Privman E, Landan G, Graur D, Pupko T. An alignment confidence score capturing robustness to guide tree uncertainty. Mol Biol Evol 2010, 27:1759-1767.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1759-1767
-
-
Penn, O.1
Privman, E.2
Landan, G.3
Graur, D.4
Pupko, T.5
-
138
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 2008, 57:758-771.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
139
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S, Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 2001, 18:691-699.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
140
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J, Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 2008, 26:1367-1372.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
|