Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri

Molecular Biology and Evolution

Volumn 22, Issue 3, 2005, Pages 589-597

  Robbens, Steven ^a,b   Khadaroo, Basheer ^a,d   Camasses, Alain ^a   Derelle, Evelyne ^a   Ferraz, Conchita ^c   Inzé, Dirk ^b   Van De Peer, Yves ^b   Moreau, Hervé ^a  

^a SORBONNE UNIVERSITÉ   (France)

^b DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^c INSTITUTE OF HUMAN GENETICS   (France)

^d Molecular Biology Group   (Italy)

Author keywords

Cell division cycle; Cyclin; Cyclin dependant kinase; Green alga; Ostreococcus tauri

Indexed keywords

APC PROTEIN; CELL CYCLE PROTEIN; CYCLIN A; CYCLIN B; CYCLIN D; CYCLIN DEPENDENT KINASE; CYCLIN DEPENDENT KINASE A; CYCLIN DEPENDENT KINASE B; CYCLIN DEPENDENT KINASE D; CYCLIN H; DIMERIZATION PARTNER PROTEIN; PROTEIN CDC25; PROTEIN CKS; PROTEIN DEL; PROTEIN WEEL; RETINOBLASTOMA PROTEIN; TRANSCRIPTION FACTOR E2F; UNCLASSIFIED DRUG;

ADAPTATION; AMINO ACID SEQUENCE; ARTICLE; CELL CYCLE; CHLOROPLAST; COMPARATIVE GENOMICS; EUKARYOTIC CELL; EVOLUTION; GENETIC ANALYSIS; GENETIC CONSERVATION; GENOMICS; GREEN ALGA; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; OSTREOCOCCUS TAURI;

ALGAE, GREEN; ALGAL PROTEINS; CELL CYCLE; EVOLUTION, MOLECULAR; GENOME; SEQUENCE ANALYSIS, DNA;

EID: 14544299388     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msi044     Document Type: Article

References (45)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Barroco, R. M., L. De Veylder, Z. Magyar, G. Engler, D. Inze, and V. Mironov. 2003. Novel complexes of cyclin-dependent kinases and a cyclin-like protein from Arabidopsis thaliana with a function unrelated to cell division. Cell. Mol. Life Sci. 60:401-412.
3. Bhattacharya, D., and L. Medlin. 1998, Algal phytogeny and the origin of land plants. Plant Physiol. 116:9-15.
4. Capron, A., L. Okresz, and P. Genschik. 2003. First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase. Trends Plant Sci. 8:83-89.
5. Chrétiennot-Dinet, M. J., C. Courues, A. Vaquer, J. Neveux, H. Claustre, J. Lautier, and M. C. Machado. 1995. A new marine picoeukaryote: Ostreococcus tauri gen. et sp. Nov. (Chlorophyta, Prasinophyceae). Phycologia 4:285-292.
6. Cope, G. A., and R. J. Deshaies. 2003. COP9 signalosome: a multifunctional regulator of SCF and other cullin-based ubiquitin ligases. Cell 114:663-671.
7. Costanzo M, J. L. Nishikawa, X. Tang, J. S. Millman, O. Schub, K. Breitkreuz, D. Dewar, I Rupes, B. Andrews, and M. Tyers. 2004. CDK Activity Antagonizes Whi5, an Inhibitor of G1/S Transcription in Yeast. Cell 117:899-913.
8. Courties, C., R. Perasso, M. J. Chrétiennot-Dinet, M. Guoy, L. Guillou, and M. Troussellier. 1998. Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta, Prasinophyceae). J. Phycol. 34:844-849.
9. Courties, C., A. Vaquer, M. Troussellier, J. Lautier, M. J. Chrétiennot-Dinet, J. Neveux, M. C. Machado, and H. Claustre. 1994. Smallest eukaryotic organism. Nature 370:255.
10. Cross, F. R., and J. M. Roberts. 2001. Retinoblastoma protein: combating algal bloom. Curr. Biol. 11:R824-R827.
11. Del Pozo, J. C., M. B. Boniotti, and C. Gutierez. 2002 Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF (AtSKP2) pathway in response to light. Plant Cell 14:3057-3071.
12. Derelle, E., C. Ferraz, P. Lagoda et al. (12 co-authors). 2002. DNA libraries for sequencing the genome of Ostreococcus tauri (chlorophyta, prasinophyceae): the smallest free-living eukaryotic cell. J. Phycol. 38:1150-1156.
13. Deshaies, R. J., and J. E. Ferrell Jr. 2001. Multisite phosphorylation and the countdown to S phase. Cell 107:819-822.
14. De Veylder, L., T. Beeckman, G. T. Beemster et al. (10 co-authors). 2001. Functional analysis of cyclin-dependent kinase inhibitors of Arabidopsis. Plant Cell 13:1653-1668.
15. Di Stefano, L., M. R. Jensen, and K. Helin. 2003. E2F7, a novel E2F featuring DP-independent repression of a subset of E2F-regulated genes. EMBO J. 22:6289-6298.
16. Dorée, M., and T. Hunt. 2002. From Cdc2 to Cdk1: When did the cell cycle kinase join its cyclin partner? J. Cell Sci. 115:2461-2464.
17. Futcher, B. 1996. Cyclins and the wiring of the yeast cell cycle. Yeast 12:1635-1646.
18. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
19. Irniger, S. 2002. Cyclin destruction in mitosis: a crucial task of Cdc20. FEES Lett. 532:7-11.
20. Jeffrey, P. D., A. A. Russo, K. Polyak, E. Gibbs, J. Hurwitz, J. Massague, and N. P. Pavletich. 1995. Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex. Nature 376:313-320.
21. Joubès, J., C. Chevalier, D. Dudits, E. Heberle-Bors, D. Inze, M. Umeda, and J. P. Renaudin. 2000. CDK-related protein kinases in plants. Plant Mol. Biol. 43:607-620.
22. Khadaroo, B., S. Robbens, C. Ferraz et al. (12 co-authors). 2004. The First Green Lineage cdc25 Dual-Specificity Phosphatase. Cell Cycle 3:513-518.
23. Landrieu, L, M. DaSilva, L. De Vielder et al. (11 co-authors). 2004. A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 101:13380-13385.
24. McKibbin, R. S., N. G. Halford, and D. Francis. 1998. Expression of fission yeast cdc25 alters the frequency of lateral root formation in transgenic tobacco. Plant Mol. Biol. 36:601-612.
25. Mendenhall, M. D., and A. E. Hodge. 1998. Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 62:1191-1243.
26. Morris, M. C., P. Kaiser, S. Rudyak, C. Baskerville, M. H. Watson, and S. I. Reed. 2003. Cks1-dependent proteasome recruitment and activation of CDC20 transcription in budding yeast. Nature 424:1009-1013.
27. Obaya, A. J., and J.M. Sedivy. 2002. Regulation of cyclin-Cdk activity in mammalian cells. Cell. Mol. Life Sci. 59:126-142.
28. Renaudin, J. P., J. H. Doonan, D. Freeman et al. (12 co-authors). 1996. Plant cyclins: a unified nomenclature for plant A-, B- and D-type cyclins based on sequence organization. Plant. Mol. Biol. 32:1003-1018.
29. Rubin, G. M., M. D. Yandell, J. R. Wortman et al. (51 co-authors). 2000. Comparative genomics of the eukaryotes. Science 287:2204-2215.
30. Rutherford, K., J. Parkhill, J. Crook, T. Horsnell, P. Rice, M. A. Rajadream, and B. Barrell. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
31. Sage, J., A. L. Miller, P. A. Perez-Mancera. 2003. Acute mutation of retinoblastoma gene function is sufficient for cell cycle re-entry Nature 424:223-228.
32. Saitou, N., and M. Nei. 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
33. Sanchez-Diaz, A., I. Gonzalez, M. Arellano, and S. Moreno. 1998. The Cdk inhibitors p25rum1 and p40SIC1 are functional homologues that play similar roles in the regulation of the cell cycle in fission and budding yeast. J. Cell Sci. 111:843-851.
34. Schiex, T., A. Moisan, and P. Rouzé. 2001. EuGène: an eucaryotic gene finder that combines several sources of evidence. Pp. 111-125 in O. Gascuel and M.-F. Sagot, eds. Computational Biology: Selected Papers (Lecture Notes in Computer Science), Vol. 2066. Springer-Verlag, Berlin.
35. Schwickart, M., J. Havlis, B. Haberman, A. Bogdanova, A. Camasses, T. Oelschlaegel, A. Shevenko, and W. Zachariae. 2004. Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27. Mol. Cell. Biol. 24:3562-3576.
36. Schwob, E., T. Bohm, M. D. Mendenhall, and K. Nasmyth. 1994. The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae. Cell 79:233-244.
37. Shen, W. H. 2002. The plant E2F-Rb pathway and epigenetic control. Trends Plant Sci. 7:505-511.
38. Stals, H., and D. Inzé 2001. When plant cells decide to divide. Trends Plant Sci. 6:359-364.
39. Tarayre, S., J. M. Vinardell, A. Cebolla, A. Kondorosi, and E. Kondorosi. 2004. Two classes of the Cdh1-type activators of the anaphase-promoting complex in plants: novel functional domains and distinct regulation. Plant Cell 16:422-434.
40. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
41. Umen, J. G., and U. W. Goodenough. 2001. Control of cell division by a retinoblastoma protein homolog in Chlamydomonas. Genes Dev. 15:1652-1661.
42. Van de Peer, Y., and R. De Wachter. 1997. Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput. Appl. Biosci. 13:227-230.
43. Vandepoele, K., J. Raes, L. De Veylder, P. Rouze, S. Rombauts, and D. Inze. 2002. Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell 14:903-916.
44. Weinberg, R. A. 1995. The retinoblastoma protein and cell cycle control. Cell 81:323-330.
45. Zhang, K., D. S. Letham, and P. C. John. 1996. Cytokinin controls the cell cycle at mitosis by stimulating the tyrosine dephosphorylation and activation of p34cdc2-like H1 histone kinase. Planta 200:2-12.