-
1
-
-
43249089766
-
Translational systems biology of inflammation
-
(doi: 10. 1371/journal. pcbi. 0040001)
-
Vodovotz Y, Csete M, Bartels J, Chang S, An G. 2008 Translational systems biology of inflammation. PLoS Comput. Biol. 4, e1. (doi: 10. 1371/journal. pcbi. 0040001)
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Vodovotz, Y.1
Csete, M.2
Bartels, J.3
Chang, S.4
An, G.5
-
3
-
-
74549170381
-
Translational systems biology of inflammation and healing
-
(doi: 10. 1111/j. 1524-475X. 2009. 00566. x)
-
Vodovotz Y. 2010 Translational systems biology of inflammation and healing. Wound Repair Regen. 18, 3-7. (doi: 10. 1111/j. 1524-475X. 2009. 00566. x)
-
(2010)
Wound Repair Regen.
, vol.18
, pp. 3-7
-
-
Vodovotz, Y.1
-
4
-
-
84861199459
-
Sepsis: Something old, something new, and a systems view
-
(doi: 10. 1016/j. jcrc. 2011. 05. 025)
-
Namas R et al. 2012 Sepsis: something old, something new, and a systems view. J. Crit. Care 27, 314. e1-11. (doi: 10. 1016/j. jcrc. 2011. 05. 025)
-
(2012)
J. Crit. Care
, vol.27
-
-
Namas, R.1
-
5
-
-
84941669840
-
At the interface between acute and chronic inflammation: Insights from computational modeling
-
(eds S Roy, C Sen). Florence, KY: Taylor & Francis
-
Vodovotz Y. 2012 At the interface between acute and chronic inflammation: insights from computational modeling. In Chronic inflammation: nutritional & therapeutic interventions (eds S Roy, C Sen). Florence, KY: Taylor & Francis.
-
(2012)
Chronic inflammation: Nutritional & therapeutic interventions
-
-
Vodovotz, Y.1
-
6
-
-
84864247996
-
Computational and systems biology in trauma and sepsis: Current state and future perspectives
-
An G, Nieman G, Vodovotz Y. 2012 Computational and systems biology in trauma and sepsis: current state and future perspectives. Int. J. Burns Trauma 2, 1-10.
-
(2012)
Int. J. Burns Trauma
, vol.2
, pp. 1-10
-
-
An, G.1
Nieman, G.2
Vodovotz, Y.3
-
7
-
-
0029150602
-
The nonspecific nature of endotoxin tolerance
-
(doi: 10. 1016/S0966-842X(00)88963-5)
-
Cavaillon JM. 1995 The nonspecific nature of endotoxin tolerance. Trends Microbiol. 3, 320-324. (doi: 10. 1016/S0966-842X(00)88963-5)
-
(1995)
Trends Microbiol.
, vol.3
, pp. 320-324
-
-
Cavaillon, J.M.1
-
8
-
-
0037951567
-
Endotoxin tolerance: Is there a clinical relevance?
-
(doi: 10. 1179/ 096805103125001487)
-
Cavaillon JM, Adrie C, Fitting C, dib-Conquy M. 2003 Endotoxin tolerance: is there a clinical relevance? J. Endotoxin Res. 9, 101-107. (doi: 10. 1179/ 096805103125001487)
-
(2003)
J. Endotoxin Res.
, vol.9
, pp. 101-107
-
-
Cavaillon, J.M.1
Adrie, C.2
Fitting, C.3
dib-Conquy, M.4
-
9
-
-
0036159842
-
Endotoxin tolerance: A review
-
(doi: 10. 1097/ 00003246-200201001-00009)
-
West MA, Heagy W. 2002 Endotoxin tolerance: a review. Crit. Care Med. 30, S64-S73. (doi: 10. 1097/ 00003246-200201001-00009)
-
(2002)
Crit. Care Med.
, vol.30
-
-
West, M.A.1
Heagy, W.2
-
10
-
-
0037180812
-
Points of control in inflammation
-
(doi: 10. 1038/nature01320)
-
Nathan C. 2002 Points of control in inflammation. Nature 420, 846-852. (doi: 10. 1038/nature01320)
-
(2002)
Nature
, vol.420
, pp. 846-852
-
-
Nathan, C.1
-
11
-
-
57749172576
-
Mechanistic simulations of inflammation: Current state and future prospects
-
(doi: 10. 1016/j. mbs. 2008. 07. 013)
-
Vodovotz Y, Constantine G, Rubin J, Csete M, Voit EO, An G. 2009 Mechanistic simulations of inflammation: current state and future prospects. Math. Biosci. 217, 1-10. (doi: 10. 1016/j. mbs. 2008. 07. 013)
-
(2009)
Math. Biosci.
, vol.217
, pp. 1-10
-
-
Vodovotz, Y.1
Constantine, G.2
Rubin, J.3
Csete, M.4
Voit, E.O.5
An, G.6
-
12
-
-
0035489972
-
Complex systems analysis: A tool for shock research
-
(doi: 10. 1097/00024382-200116040-00002)
-
Buchman TG, Cobb JP, Lapedes AS, Kepler TB. 2001 Complex systems analysis: a tool for shock research. Shock 16, 248-251. (doi: 10. 1097/00024382-200116040-00002)
-
(2001)
Shock
, vol.16
, pp. 248-251
-
-
Buchman, T.G.1
Cobb, J.P.2
Lapedes, A.S.3
Kepler, T.B.4
-
13
-
-
0036500993
-
Systems biology: A brief overview
-
(doi: 10. 1126/science. 1069492)
-
Kitano H. 2002 Systems biology: a brief overview. Science 295, 1662-1664. (doi: 10. 1126/science. 1069492)
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
14
-
-
0037079054
-
Computational systems biology
-
(doi: 10. 1038/nature01254)
-
Kitano H. 2002 Computational systems biology. Nature 420, 206-210. (doi: 10. 1038/nature01254)
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
15
-
-
0036500834
-
Reverse engineering of biological complexity
-
(doi: 10. 1126/science. 1069981)
-
Csete ME, Doyle JC. 2002 Reverse engineering of biological complexity. Science 295, 1664-1669. (doi: 10. 1126/science. 1069981)
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
16
-
-
84880960789
-
In silico modeling: Methods and applications to trauma and sepsis
-
(doi: 10. 1097/CCM. 0b013e31829a6eb4)
-
Vodovotz Y, Billiar TR. 2013 In silico modeling: methods and applications to trauma and sepsis. Crit. Care Med. 41, 2008-2014. (doi: 10. 1097/CCM. 0b013e31829a6eb4)
-
(2013)
Crit. Care Med.
, vol.41
, pp. 2008-2014
-
-
Vodovotz, Y.1
Billiar, T.R.2
-
17
-
-
0035775725
-
A new approach to decoding life: Systems biology
-
(doi: 10. 1146/annurev. genom. 2. 1. 343)
-
Ideker T, Galitski T, Hood L. 2001 A new approach to decoding life: systems biology. Annu. Rev. Genomics Hum. Genet. 2, 343-372. (doi: 10. 1146/annurev. genom. 2. 1. 343)
-
(2001)
Annu. Rev. Genomics Hum. Genet.
, vol.2
, pp. 343-372
-
-
Ideker, T.1
Galitski, T.2
Hood, L.3
-
18
-
-
21044443402
-
Search for organising principles: Understanding in systems biology
-
(doi: 10. 1049/ sb: 20045010)
-
Mesarovic MD, Sreenath SN, Keene JD. 2004 Search for organising principles: understanding in systems biology. Syst. Biol. 1, 19-27. (doi: 10. 1049/ sb: 20045010)
-
(2004)
Syst. Biol.
, vol.1
, pp. 19-27
-
-
Mesarovic, M.D.1
Sreenath, S.N.2
Keene, J.D.3
-
19
-
-
33750351769
-
Data-driven modelling of signal-transduction networks
-
(doi: 10. 1038/nrm2041)
-
Janes KA, Yaffe MB. 2006 Data-driven modelling of signal-transduction networks. Nat. Rev. Mol. Cell Biol. 7, 820-828. (doi: 10. 1038/nrm2041)
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 820-828
-
-
Janes, K.A.1
Yaffe, M.B.2
-
20
-
-
79952643760
-
Network news: Innovations in 21st century systems biology
-
(doi: 10. 1016/j. cell. 2011. 03. 008)
-
Arkin AP, Schaffer DV. 2011 Network news: innovations in 21st century systems biology. Cell 144, 844-849. (doi: 10. 1016/j. cell. 2011. 03. 008)
-
(2011)
Cell
, vol.144
, pp. 844-849
-
-
Arkin, A.P.1
Schaffer, D.V.2
-
21
-
-
0034126611
-
Regression and model-building in conservation biology, biogeography and ecology: The distinction between-and reconciliation of-'predictive' and 'explanatory' models
-
(doi: 10. 1023/ A: 1008985925162)
-
MacNally R. 2000 Regression and model-building in conservation biology, biogeography and ecology: the distinction between-and reconciliation of-'predictive' and 'explanatory' models. Biodivers. Conserv. 9, 655-671. (doi: 10. 1023/ A: 1008985925162)
-
(2000)
Biodivers. Conserv.
, vol.9
, pp. 655-671
-
-
McNally, R.1
-
22
-
-
84870827578
-
Hemoadsorption reprograms inflammation in experimental Gram-negative septic fibrin peritonitis: Insights from in vivo and in silico studies
-
(doi: 10. 2119/ molmed. 2012. 00106)
-
Namas R et al. 2012 Hemoadsorption reprograms inflammation in experimental Gram-negative septic fibrin peritonitis: insights from in vivo and in silico studies. Mol. Med. 18, 1366-1374. (doi: 10. 2119/ molmed. 2012. 00106)
-
(2012)
Mol. Med.
, vol.18
, pp. 1366-1374
-
-
Namas, R.1
-
23
-
-
77952163906
-
Translational systems approaches to the biology of inflammation and healing
-
(doi: 10. 3109/08923970903369867)
-
Vodovotz Y et al. 2010 Translational systems approaches to the biology of inflammation and healing. Immunopharmacol. Immunotoxicol. 32, 181-195. (doi: 10. 3109/08923970903369867)
-
(2010)
Immunopharmacol. Immunotoxicol.
, vol.32
, pp. 181-195
-
-
Vodovotz, Y.1
-
25
-
-
79955904927
-
A dynamic view of trauma/ hemorrhage-induced inflammation in mice: Principal drivers and networks
-
(doi: 10. 1371/journal. pone. 0019424)
-
Mi Q et al. 2011 A dynamic view of trauma/ hemorrhage-induced inflammation in mice: principal drivers and networks. PLoS ONE 6, e19424. (doi: 10. 1371/journal. pone. 0019424)
-
(2011)
PLoS ONE
, vol.6
-
-
Mi, Q.1
-
26
-
-
0025142004
-
Tumor necrosis factor-alpha, interleukin-8 and chemotactic cytokines
-
Kunkel SL, Strieter RM, Chensue SW, Basha M, Standiford T, Ham J, Remick DG. 1990 Tumor necrosis factor-alpha, interleukin-8 and chemotactic cytokines. Progr. Clin. Biol. Res. 349, 433-444.
-
(1990)
Progr. Clin. Biol. Res.
, vol.349
, pp. 433-444
-
-
Kunkel, S.L.1
Strieter, R.M.2
Chensue, S.W.3
Basha, M.4
Standiford, T.5
Ham, J.6
Remick, D.G.7
-
27
-
-
0025289423
-
Cytokine networks in the regulation of inflammation and fibrosis in the lung
-
(doi: 10. 1378/chest. 97. 6. 1439)
-
Elias JA, Freundlich B, Kern JA, Rosenbloom J. 1990 Cytokine networks in the regulation of inflammation and fibrosis in the lung. Chest 97, 1439-1445. (doi: 10. 1378/chest. 97. 6. 1439)
-
(1990)
Chest
, vol.97
, pp. 1439-1445
-
-
Elias, J.A.1
Freundlich, B.2
Kern, J.A.3
Rosenbloom, J.4
-
28
-
-
1942531962
-
An update on the cytokine network in rheumatoid arthritis
-
(doi: 10. 1097/00002281-200405000-00009)
-
Miossec P. 2004 An update on the cytokine network in rheumatoid arthritis. Curr. Opin. Rheumatol. 16, 218-222. (doi: 10. 1097/00002281-200405000-00009)
-
(2004)
Curr. Opin. Rheumatol.
, vol.16
, pp. 218-222
-
-
Miossec, P.1
-
29
-
-
27144509163
-
A network-based analysis of systemic inflammation in humans
-
(doi: 10. 1038/nature03985)
-
Calvano SE et al. 2005 A network-based analysis of systemic inflammation in humans. Nature 437, 1032-1037. (doi: 10. 1038/nature03985)
-
(2005)
Nature
, vol.437
, pp. 1032-1037
-
-
Calvano, S.E.1
-
30
-
-
33947156679
-
The innate immune response to infection, toxins and trauma evolved into networks of interactive, defensive, reparative, regulatory, injurious and pathogenic pathways
-
(doi: 10. 1016/j. molimm. 2007. 01. 011)
-
Stavitsky AB. 2007 The innate immune response to infection, toxins and trauma evolved into networks of interactive, defensive, reparative, regulatory, injurious and pathogenic pathways. Mol. Immunol. 44, 2787-2799. (doi: 10. 1016/j. molimm. 2007. 01. 011)
-
(2007)
Mol. Immunol.
, vol.44
, pp. 2787-2799
-
-
Stavitsky, A.B.1
-
31
-
-
84975806501
-
Inflammatory networks in ageing, age-related diseases and longevity
-
(doi: 10. 1016/j. mad. 2006. 11. 015)
-
Vasto S et al. 2007 Inflammatory networks in ageing, age-related diseases and longevity. Mech. Ageing Dev. 128, 83-91. (doi: 10. 1016/j. mad. 2006. 11. 015)
-
(2007)
Mech. Ageing Dev.
, vol.128
, pp. 83-91
-
-
Vasto, S.1
-
32
-
-
71749089391
-
Networks, biology and systems engineering: A case study in inflammation
-
(doi: 10. 1016/j. compchemeng. 2009. 06. 027)
-
Foteinou PT, Yang E, Androulakis IP. 2009 Networks, biology and systems engineering: a case study in inflammation. Comput. Chem. Eng. 33, 2028-2041. (doi: 10. 1016/j. compchemeng. 2009. 06. 027)
-
(2009)
Comput. Chem. Eng.
, vol.33
, pp. 2028-2041
-
-
Foteinou, P.T.1
Yang, E.2
Androulakis, I.P.3
-
33
-
-
77956554551
-
Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes
-
(doi: 10. 1074/mcp. M110. 000406)
-
Alexopoulos LG, Saez-Rodriguez J, Cosgrove BD, Lauffenburger DA, Sorger PK. 2010 Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes. Mol. Cell. Proteomics 9, 1849-1865. (doi: 10. 1074/mcp. M110. 000406)
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1849-1865
-
-
Alexopoulos, L.G.1
Saez-Rodriguez, J.2
Cosgrove, B.D.3
Lauffenburger, D.A.4
Sorger, P.K.5
-
34
-
-
0348136789
-
Reverse engineering of genetic networks with Bayesian networks
-
(doi: 10. 1042/BST0311516)
-
Husmeier D. 2003 Reverse engineering of genetic networks with Bayesian networks. Biochem. Soc. Trans. 31, 1516-1518. (doi: 10. 1042/BST0311516)
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 1516-1518
-
-
Husmeier, D.1
-
35
-
-
13844276694
-
Cluster analysis for gene expression data: A survey
-
(doi: 10. 1109/ TKDE. 2004. 68)
-
Jiang DTC, Zhang A. 2004 Cluster analysis for gene expression data: a survey. IEEE Trans. Knowl. Data Eng. 16, 1370-1386. (doi: 10. 1109/ TKDE. 2004. 68)
-
(2004)
IEEE Trans. Knowl. Data Eng.
, vol.16
, pp. 1370-1386
-
-
Jiang, D.T.C.1
Zhang, A.2
-
36
-
-
75149168911
-
Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway
-
(doi: 10. 1186/ 1471-2105-10-433)
-
Shah A, Tenzen T, McMahon AP, Woolf PJ. 2009 Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway. BMC Bioinformatics 10, 433. (doi: 10. 1186/ 1471-2105-10-433)
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 433
-
-
Shah, A.1
Tenzen, T.2
McMahon, A.P.3
Woolf, P.J.4
-
37
-
-
35649010459
-
Steady state approach to model gene regulatory networks: Simulation of microarray experiments
-
(doi: 10. 1016/j. biosystems. 2007. 02. 003)
-
Rawool SB, Venkatesh KV. 2007 Steady state approach to model gene regulatory networks: simulation of microarray experiments. Biosystems 90, 636-655. (doi: 10. 1016/j. biosystems. 2007. 02. 003)
-
(2007)
Biosystems
, vol.90
, pp. 636-655
-
-
Rawool, S.B.1
Venkatesh, K.V.2
-
38
-
-
84868357677
-
Toward computational identification of multiscale tipping points in multiple organ failure
-
(doi: 10. 1007/s10439-012-0565-9)
-
An G, Nieman G, Vodovotz Y. 2012 Toward computational identification of multiscale tipping points in multiple organ failure. Ann. Biomed. Eng. 40, 2412-2424. (doi: 10. 1007/s10439-012-0565-9)
-
(2012)
Ann. Biomed. Eng.
, vol.40
, pp. 2412-2424
-
-
An, G.1
Nieman, G.2
Vodovotz, Y.3
-
39
-
-
84892949703
-
Analysis of serum inflammatory mediators identifies unique dynamic networks associated with death and spontaneous survival in pediatric acute liver failure
-
(doi: 10. 1371/journal. pone. 0078202)
-
Azhar N, Ziraldo C, Barclay D, Rudnick D, Squires R, Vodovotz Y. 2013 Analysis of serum inflammatory mediators identifies unique dynamic networks associated with death and spontaneous survival in pediatric acute liver failure. PLoS ONE 8, e78202. (doi: 10. 1371/journal. pone. 0078202)
-
(2013)
PLoS ONE
, vol.8
-
-
Azhar, N.1
Ziraldo, C.2
Barclay, D.3
Rudnick, D.4
Squires, R.5
Vodovotz, Y.6
-
41
-
-
34249826054
-
Challenges and rewards on the road to translational systems biology in acute illness: Four case reports from interdisciplinary teams
-
(doi: 10. 1016/j. jcrc. 2006. 12. 011)
-
An G, Hunt CA, Clermont G, Neugebauer E, Vodovotz Y. 2007 Challenges and rewards on the road to translational systems biology in acute illness: four case reports from interdisciplinary teams. J. Crit. Care 22, 169-175. (doi: 10. 1016/j. jcrc. 2006. 12. 011)
-
(2007)
J. Crit. Care
, vol.22
, pp. 169-175
-
-
An, G.1
Hunt, C.A.2
Clermont, G.3
Neugebauer, E.4
Vodovotz, Y.5
-
42
-
-
41849114552
-
Translational systems biology: Introduction of an engineering approach to the pathophysiology of the burn patient
-
(doi: 10. 1097/BCR. 0b013e31816677c8)
-
An G, Faeder J, Vodovotz Y. 2008 Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient. J. Burn Care Res. 29, 277-285. (doi: 10. 1097/BCR. 0b013e31816677c8)
-
(2008)
J. Burn Care Res.
, vol.29
, pp. 277-285
-
-
An, G.1
Faeder, J.2
Vodovotz, Y.3
-
43
-
-
4744344132
-
In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent based modeling
-
(doi: 10. 1097/01. CCM. 0000139707. 13729. 7D)
-
An G. 2004 In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent based modeling. Crit. Care Med. 32, 2050-2060. (doi: 10. 1097/01. CCM. 0000139707. 13729. 7D)
-
(2004)
Crit. Care Med.
, vol.32
, pp. 2050-2060
-
-
An, G.1
-
44
-
-
4043154901
-
The dynamics of acute inflammation
-
(doi: 10. 1016/j. jtbi. 2004. 04. 044)
-
Kumar R, Clermont G, Vodovotz Y, Chow CC. 2004 The dynamics of acute inflammation. J. Theor. Biol. 230, 145-155. (doi: 10. 1016/j. jtbi. 2004. 04. 044)
-
(2004)
J. Theor. Biol.
, vol.230
, pp. 145-155
-
-
Kumar, R.1
Clermont, G.2
Vodovotz, Y.3
Chow, C.C.4
-
45
-
-
4043056616
-
In silico design of clinical trials: A method coming of age
-
(doi: 10. 1097/01. CCM. 0000142394. 28791. C3)
-
Clermont G, Bartels J, Kumar R, Constantine G, Vodovotz Y, Chow C. 2004 In silico design of clinical trials: a method coming of age. Crit. Care Med. 32, 2061-2070. (doi: 10. 1097/01. CCM. 0000142394. 28791. C3)
-
(2004)
Crit. Care Med.
, vol.32
, pp. 2061-2070
-
-
Clermont, G.1
Bartels, J.2
Kumar, R.3
Constantine, G.4
Vodovotz, Y.5
Chow, C.6
-
46
-
-
33747106908
-
A reduced mathematical model of the acute inflammatory response. I. Derivation of model and analysis of antiinflammation
-
(doi: 10. 1016/j. jtbi. 2006. 02. 016)
-
Reynolds A, Rubin J, Clermont G, Day J, Vodovotz Y, Ermentrout GB. 2006 A reduced mathematical model of the acute inflammatory response. I. Derivation of model and analysis of antiinflammation. J. Theor. Biol. 242, 220-236. (doi: 10. 1016/j. jtbi. 2006. 02. 016)
-
(2006)
J. Theor. Biol.
, vol.242
, pp. 220-236
-
-
Reynolds, A.1
Rubin, J.2
Clermont, G.3
Day, J.4
Vodovotz, Y.5
Ermentrout, G.B.6
-
47
-
-
37549004342
-
A mathematical simulation of the inflammatory response to anthrax infection
-
(doi: 10. 1097/SHK. 0b013e318067dcfe)
-
Kumar R, Chow CC, Bartels J, Clermont G, Vodovotz Y. 2008 A mathematical simulation of the inflammatory response to anthrax infection. Shock 29, 104-111. (doi: 10. 1097/SHK. 0b013e318067dcfe)
-
(2008)
Shock
, vol.29
, pp. 104-111
-
-
Kumar, R.1
Chow, C.C.2
Bartels, J.3
Clermont, G.4
Vodovotz, Y.5
-
48
-
-
21744440089
-
The acute inflammatory response in diverse shock states
-
(doi: 10. 1097/01. shk. 0000168526. 97716. f3)
-
Chow CC et al. 2005 The acute inflammatory response in diverse shock states. Shock 24, 74-84. (doi: 10. 1097/01. shk. 0000168526. 97716. f3)
-
(2005)
Shock
, vol.24
, pp. 74-84
-
-
Chow, C.C.1
-
49
-
-
33747094446
-
A reduced mathematical model of the acute inflammatory response. II. Capturing scenarios of repeated endotoxin administration
-
(doi: 10. 1016/j. jtbi. 2006. 02. 015)
-
Day J, Rubin J, Vodovotz Y, Chow CC, Reynolds A, Clermont G. 2006 A reduced mathematical model of the acute inflammatory response. II. Capturing scenarios of repeated endotoxin administration. J. Theor. Biol. 242, 237-256. (doi: 10. 1016/j. jtbi. 2006. 02. 015)
-
(2006)
J. Theor. Biol.
, vol.242
, pp. 237-256
-
-
Day, J.1
Rubin, J.2
Vodovotz, Y.3
Chow, C.C.4
Reynolds, A.5
Clermont, G.6
-
50
-
-
33749022785
-
In silico and in vivo approach to elucidate the inflammatory complexity of CD14-deficient mice
-
(doi: 10. 2119/2006-00012. Prince)
-
Prince JM et al. 2006 In silico and in vivo approach to elucidate the inflammatory complexity of CD14-deficient mice. Mol. Med. 12, 88-96. (doi: 10. 2119/2006-00012. Prince)
-
(2006)
Mol. Med.
, vol.12
, pp. 88-96
-
-
Prince, J.M.1
-
51
-
-
47849114337
-
An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: Results from parameter space reduction
-
(doi: 10. 1016/j. jtbi. 2008. 04. 033)
-
Daun S, Rubin J, Vodovotz Y, Roy A, Parker R, Clermont G. 2008 An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: results from parameter space reduction. J. Theor. Biol. 253, 843-853. (doi: 10. 1016/j. jtbi. 2008. 04. 033)
-
(2008)
J. Theor. Biol.
, vol.253
, pp. 843-853
-
-
Daun, S.1
Rubin, J.2
Vodovotz, Y.3
Roy, A.4
Parker, R.5
Clermont, G.6
-
52
-
-
57849104348
-
Modeling endotoxin-induced systemic inflammation using an indirect response approach
-
(doi: 10. 1016/j. mbs. 2008. 09. 003)
-
Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. 2009 Modeling endotoxin-induced systemic inflammation using an indirect response approach. Math. Biosci. 217, 27-42. (doi: 10. 1016/j. mbs. 2008. 09. 003)
-
(2009)
Math. Biosci.
, vol.217
, pp. 27-42
-
-
Foteinou, P.T.1
Calvano, S.E.2
Lowry, S.F.3
Androulakis, I.P.4
-
53
-
-
62849112761
-
In silico simulation of corticosteroids effect on an NFkB-dependent physicochemical model of systemic inflammation
-
(doi: 10. 1371/journal. pone. 0004706)
-
Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. 2009 In silico simulation of corticosteroids effect on an NFkB-dependent physicochemical model of systemic inflammation. PLoS ONE 4, e4706. (doi: 10. 1371/journal. pone. 0004706)
-
(2009)
PLoS ONE
, vol.4
-
-
Foteinou, P.T.1
Calvano, S.E.2
Lowry, S.F.3
Androulakis, I.P.4
-
54
-
-
57849158644
-
Detailed qualitative dynamic knowledge representation using a BioNetGen model of TLR-4 signaling and preconditioning
-
(doi: 10. 1016/j. mbs. 2008. 08. 013)
-
An G, Faeder JR. 2009 Detailed qualitative dynamic knowledge representation using a BioNetGen model of TLR-4 signaling and preconditioning. Math. Biosci. 217, 53-63. (doi: 10. 1016/j. mbs. 2008. 08. 013)
-
(2009)
Math. Biosci.
, vol.217
, pp. 53-63
-
-
An, G.1
Faeder, J.R.2
-
55
-
-
57849103868
-
A model of TLR4 signaling and tolerance using a qualitative, particle event-based method: Introduction of spatially configured stochastic reaction chambers (SCSRC)
-
(doi: 10. 1016/j. mbs. 2008. 10. 001)
-
An G. 2009 A model of TLR4 signaling and tolerance using a qualitative, particle event-based method: introduction of spatially configured stochastic reaction chambers (SCSRC). Math. Biosci. 217, 43-52. (doi: 10. 1016/j. mbs. 2008. 10. 001)
-
(2009)
Math. Biosci.
, vol.217
, pp. 43-52
-
-
An, G.1
-
56
-
-
57749186048
-
A simple mathematical model of signaling resulting from the binding of lipopolysaccharide with Toll-like receptor 4 demonstrates inherent preconditioning behavior
-
(doi: 10. 1016/j. mbs. 2008. 10. 002)
-
Rivière B, Epshteyn Y, Swigon D, Vodovotz Y. 2009 A simple mathematical model of signaling resulting from the binding of lipopolysaccharide with Toll-like receptor 4 demonstrates inherent preconditioning behavior. Math. Biosci. 217, 19-26. (doi: 10. 1016/j. mbs. 2008. 10. 002)
-
(2009)
Math. Biosci.
, vol.217
, pp. 19-26
-
-
Rivière, B.1
Epshteyn, Y.2
Swigon, D.3
Vodovotz, Y.4
-
57
-
-
84863338100
-
A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine
-
(doi: 10. 1097/CCM. 0b013e31823e986a)
-
Nieman K et al. 2012 A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine. Crit. Care Med. 40, 1052-1063. (doi: 10. 1097/CCM. 0b013e31823e986a)
-
(2012)
Crit. Care Med.
, vol.40
, pp. 1052-1063
-
-
Nieman, K.1
-
58
-
-
77949496645
-
Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes
-
(doi: 10. 1371/journal. pone. 0009249)
-
Dong X, Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. 2010 Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes. PLoS ONE 5, e9249. (doi: 10. 1371/journal. pone. 0009249)
-
(2010)
PLoS ONE
, vol.5
-
-
Dong, X.1
Foteinou, P.T.2
Calvano, S.E.3
Lowry, S.F.4
Androulakis, I.P.5
-
59
-
-
77953214777
-
Multiscale model for the assessment of autonomic dysfunction in human endotoxemia
-
(doi: 10. 1152/ physiolgenomics. 00184. 2009)
-
Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. 2010 Multiscale model for the assessment of autonomic dysfunction in human endotoxemia. Physiol. Genomics 42, 5-19. (doi: 10. 1152/ physiolgenomics. 00184. 2009)
-
(2010)
Physiol. Genomics
, vol.42
, pp. 5-19
-
-
Foteinou, P.T.1
Calvano, S.E.2
Lowry, S.F.3
Androulakis, I.P.4
-
60
-
-
77952597821
-
Modeling the influence of circadian rhythms on the acute inflammatory response
-
(doi: 10. 1016/j. jtbi. 2010. 03. 026)
-
Scheff JD, Calvano SE, Lowry SF, Androulakis IP. 2010 Modeling the influence of circadian rhythms on the acute inflammatory response. J. Theor. Biol. 264, 1068-1076. (doi: 10. 1016/j. jtbi. 2010. 03. 026)
-
(2010)
J. Theor. Biol.
, vol.264
, pp. 1068-1076
-
-
Scheff, J.D.1
Calvano, S.E.2
Lowry, S.F.3
Androulakis, I.P.4
-
61
-
-
79952163506
-
A physiological model for autonomic heart rate regulation in human endotoxemia
-
(doi: 10. 1097/SHK. 0b013e318200032b)
-
Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. 2011 A physiological model for autonomic heart rate regulation in human endotoxemia. Shock 35, 229-239. (doi: 10. 1097/SHK. 0b013e318200032b)
-
(2011)
Shock
, vol.35
, pp. 229-239
-
-
Foteinou, P.T.1
Calvano, S.E.2
Lowry, S.F.3
Androulakis, I.P.4
-
62
-
-
79960132229
-
A dual negative regulation model of Toll-like receptor 4 signaling for endotoxin preconditioning in human endotoxemia
-
(doi: 10. 1016/j. mbs. 2011. 05. 005)
-
Yang Q, Calvano SE, Lowry SF, Androulakis IP. 2011 A dual negative regulation model of Toll-like receptor 4 signaling for endotoxin preconditioning in human endotoxemia. Math. Biosci. 232, 151-163. (doi: 10. 1016/j. mbs. 2011. 05. 005)
-
(2011)
Math. Biosci.
, vol.232
, pp. 151-163
-
-
Yang, Q.1
Calvano, S.E.2
Lowry, S.F.3
Androulakis, I.P.4
-
63
-
-
33751222859
-
The role of initial trauma in the host's response to injury and hemorrhage: Insights from a comparison of mathematical simulations and hepatic transcriptomic analysis
-
(doi: 10. 1097/01. shk. 0000232272. 03602. 0a)
-
Lagoa CE, Bartels J, Baratt A, Tseng G, Clermont G, Fink MP, Billiar TR, Vodovotz Y. 2006 The role of initial trauma in the host's response to injury and hemorrhage: insights from a comparison of mathematical simulations and hepatic transcriptomic analysis. Shock 26, 592-600. (doi: 10. 1097/01. shk. 0000232272. 03602. 0a)
-
(2006)
Shock
, vol.26
, pp. 592-600
-
-
Lagoa, C.E.1
Bartels, J.2
Baratt, A.3
Tseng, G.4
Clermont, G.5
Fink, M.P.6
Billiar, T.R.7
Vodovotz, Y.8
-
64
-
-
67749139592
-
Mathematical modeling of posthemorrhage inflammation in mice: Studies using a novel, computer-controlled, closed-loop hemorrhage apparatus
-
(doi: 10. 1097/SHK. 0b013e318193cc2b)
-
Torres A et al. 2009 Mathematical modeling of posthemorrhage inflammation in mice: studies using a novel, computer-controlled, closed-loop hemorrhage apparatus. Shock 32, 172-178. (doi: 10. 1097/SHK. 0b013e318193cc2b)
-
(2009)
Shock
, vol.32
, pp. 172-178
-
-
Torres, A.1
-
65
-
-
77956321525
-
Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis
-
(doi: 10. 1371/journal. pone. 0010066)
-
Arciero J, Rubin J, Upperman J, Vodovotz Y, Ermentrout GB. 2010 Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis. PLoS ONE 5, e10066. (doi: 10. 1371/journal. pone. 0010066)
-
(2010)
PLoS ONE
, vol.5
-
-
Arciero, J.1
Rubin, J.2
Upperman, J.3
Vodovotz, Y.4
Ermentrout, G.B.5
-
66
-
-
84863272764
-
Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: Insights from an agent-based model
-
(doi: 10. 1089/sur. 2011. 057)
-
Kim M, Christley S, Alverdy JC, Liu D, An G. 2012 Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: insights from an agent-based model. Surg. Infect. (Larchmt) 13, 18-32. (doi: 10. 1089/sur. 2011. 057)
-
(2012)
Surg. Infect. (Larchmt)
, vol.13
, pp. 18-32
-
-
Kim, M.1
Christley, S.2
Alverdy, J.C.3
Liu, D.4
An, G.5
-
67
-
-
84874520997
-
Modeling the interactions of bacteria and Toll-like receptormediated inflammation in necrotizing enterocolitis
-
(doi: 10. 1016/j. jtbi. 2012. 12. 002)
-
Arciero J, Ermentrout GB, Siggers R, Afrazi A, Hackam D, Vodovotz Y, Rubin J. 2013 Modeling the interactions of bacteria and Toll-like receptormediated inflammation in necrotizing enterocolitis. J. Theor. Biol. 321, 83-99. (doi: 10. 1016/j. jtbi. 2012. 12. 002)
-
(2013)
J. Theor. Biol.
, vol.321
, pp. 83-99
-
-
Arciero, J.1
Ermentrout, G.B.2
Siggers, R.3
Afrazi, A.4
Hackam, D.5
Vodovotz, Y.6
Rubin, J.7
-
68
-
-
84873536205
-
A threedimensional mathematical and computational model of necrotizing enterocolitis
-
(doi: 10. 1016/j. jtbi. 2012. 11. 018)
-
Barber J, Tronzo M, Harold HC, Clermont G, Upperman J, Vodovotz Y, Yotov I. 2013 A threedimensional mathematical and computational model of necrotizing enterocolitis. J. Theor. Biol. 322, 17-32. (doi: 10. 1016/j. jtbi. 2012. 11. 018)
-
(2013)
J. Theor. Biol.
, vol.322
, pp. 17-32
-
-
Barber, J.1
Tronzo, M.2
Harold, H.C.3
Clermont, G.4
Upperman, J.5
Vodovotz, Y.6
Yotov, I.7
-
69
-
-
34848830242
-
Agent-based model of inflammation and wound healing: Insights into diabetic foot ulcer pathology and the role of transforming growth factor-b1
-
(doi: 10. 1111/j. 1524-475X. 2007. 00293. x)
-
Mi Q, Rivière B, Clermont G, Steed DL, Vodovotz Y. 2007 Agent-based model of inflammation and wound healing: insights into diabetic foot ulcer pathology and the role of transforming growth factor-b1. Wound Repair Regen. 15, 617-682. (doi: 10. 1111/j. 1524-475X. 2007. 00293. x)
-
(2007)
Wound Repair Regen.
, vol.15
, pp. 617-682
-
-
Mi, Q.1
Rivière, B.2
Clermont, G.3
Steed, D.L.4
Vodovotz, Y.5
-
70
-
-
50949091234
-
A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury
-
(doi: 10. 1371/ journal. pone. 0002789)
-
Li NYK, Verdolini K, Clermont G, Mi Q, Hebda PA, Vodovotz Y. 2008 A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury. PLoS ONE 3, e2789. (doi: 10. 1371/ journal. pone. 0002789)
-
(2008)
PLoS ONE
, vol.3
-
-
Li, N.Y.K.1
Verdolini, K.2
Clermont, G.3
Mi, Q.4
Hebda, P.A.5
Vodovotz, Y.6
-
71
-
-
80055038758
-
Biosimulation of acute phonotrauma: An extended model
-
(doi: 10. 1002/lary. 22226)
-
Li NYK, Vodovotz Y, Kim KH, Mi Q, Hebda PA, Verdolini Abbott K. 2011 Biosimulation of acute phonotrauma: an extended model. Laryngoscope 121, 2418-2428. (doi: 10. 1002/lary. 22226)
-
(2011)
Laryngoscope
, vol.121
, pp. 2418-2428
-
-
Li, N.Y.K.1
Vodovotz, Y.2
Kim, K.H.3
Mi, Q.4
Hebda, P.A.5
Verdolini Abbott, K.6
-
73
-
-
33947193958
-
Evidence-based modeling of critical illness: An initial consensus from the Society for Complexity in Acute Illness
-
(doi: 10. 1016/j. jcrc. 2006. 12. 001)
-
Vodovotz Y et al. 2007 Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness. J. Crit. Care 22, 77-84. (doi: 10. 1016/j. jcrc. 2006. 12. 001)
-
(2007)
J. Crit. Care
, vol.22
, pp. 77-84
-
-
Vodovotz, Y.1
-
74
-
-
84906510400
-
Time varying patterns of organ failure
-
Constantine G, Buliga M, Vodovotz Y, Bohnen N, Clermont G. 2010 Time varying patterns of organ failure. Int. J. Contemp. Math. Sci. 5, 2263-2272.
-
(2010)
Int. J. Contemp. Math. Sci.
, vol.5
, pp. 2263-2272
-
-
Constantine, G.1
Buliga, M.2
Vodovotz, Y.3
Bohnen, N.4
Clermont, G.5
-
75
-
-
77957580213
-
Translational systems biology of inflammation: Potential applications to personalized medicine
-
(doi: 10. 2217/pme. 10. 45)
-
Mi Q et al. 2010 Translational systems biology of inflammation: potential applications to personalized medicine. Personal. Med. 7, 549-559. (doi: 10. 2217/pme. 10. 45)
-
(2010)
Personal. Med.
, vol.7
, pp. 549-559
-
-
Mi, Q.1
-
76
-
-
82655189202
-
Inflammation and traumatic stress: The society to cells resiliency model to support integrative interventions
-
(doi: 10. 1177/ 1078390311418652)
-
Gill JM, Szanton S. 2011 Inflammation and traumatic stress: the society to cells resiliency model to support integrative interventions. J. Am. Psychiatr. Nurses Assoc. 17, 404-416. (doi: 10. 1177/ 1078390311418652)
-
(2011)
J. Am. Psychiatr. Nurses Assoc.
, vol.17
, pp. 404-416
-
-
Gill, J.M.1
Szanton, S.2
-
77
-
-
84870757960
-
Stressful early life experiences and immune dysregulation across the lifespan
-
(doi: 10. 1016/j. bbi. 2012. 06. 014)
-
Fagundes CP, Glaser R, Kiecolt-Glaser JK. 2012 Stressful early life experiences and immune dysregulation across the lifespan. Brain Behav. Immun. 1, 8-12. (doi: 10. 1016/j. bbi. 2012. 06. 014)
-
(2012)
Brain Behav. Immun.
, vol.1
, pp. 8-12
-
-
Fagundes, C.P.1
Glaser, R.2
Kiecolt-Glaser, J.K.3
|