-
1
-
-
84878270899
-
RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence
-
Masliah G., et al. RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence. Cell. Mol. Life Sci. 2013, 70:1875-1895.
-
(2013)
Cell. Mol. Life Sci.
, vol.70
, pp. 1875-1895
-
-
Masliah, G.1
-
2
-
-
18544377013
-
The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
-
Maris C., et al. The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J. 2005, 272:2118-2131.
-
(2005)
FEBS J.
, vol.272
, pp. 2118-2131
-
-
Maris, C.1
-
3
-
-
36849013062
-
A stepwise model for double-stranded RNA processing by ribonuclease III
-
Gan J., et al. A stepwise model for double-stranded RNA processing by ribonuclease III. Mol. Microbiol. 2008, 67:143-154.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 143-154
-
-
Gan, J.1
-
4
-
-
10044246238
-
The double-stranded-RNA-binding motif: interference and much more
-
Tian B., et al. The double-stranded-RNA-binding motif: interference and much more. Nat. Rev. Mol. Cell Biol. 2004, 5:1013-1023.
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 1013-1023
-
-
Tian, B.1
-
5
-
-
81855205059
-
ADAR proteins: double-stranded RNA and Z-DNA binding domains
-
Barraud P., Allain F.H. ADAR proteins: double-stranded RNA and Z-DNA binding domains. Curr. Top. Microbiol. Immunol. 2012, 353:35-60.
-
(2012)
Curr. Top. Microbiol. Immunol.
, vol.353
, pp. 35-60
-
-
Barraud, P.1
Allain, F.H.2
-
6
-
-
77957822421
-
The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove
-
Stefl R., et al. The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove. Cell 2010, 143:225-237.
-
(2010)
Cell
, vol.143
, pp. 225-237
-
-
Stefl, R.1
-
7
-
-
0342723737
-
RNA recognition by a Staufen double-stranded RNA-binding domain
-
Ramos A., et al. RNA recognition by a Staufen double-stranded RNA-binding domain. EMBO J. 2000, 19:997-1009.
-
(2000)
EMBO J.
, vol.19
, pp. 997-1009
-
-
Ramos, A.1
-
8
-
-
79960173334
-
Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs
-
Wang Z., et al. Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs. Structure 2011, 19:999-1010.
-
(2011)
Structure
, vol.19
, pp. 999-1010
-
-
Wang, Z.1
-
9
-
-
3042704491
-
Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III
-
Wu H., et al. Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:8307-8312.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8307-8312
-
-
Wu, H.1
-
10
-
-
0034687782
-
Straightening of bulged RNA by the double-stranded RNA-binding domain from the protein kinase PKR
-
Zheng X., Bevilacqua P.C. Straightening of bulged RNA by the double-stranded RNA-binding domain from the protein kinase PKR. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:14162-14167.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 14162-14167
-
-
Zheng, X.1
Bevilacqua, P.C.2
-
11
-
-
84871993643
-
ATP-independent diffusion of double-stranded RNA binding proteins
-
Koh H.R., et al. ATP-independent diffusion of double-stranded RNA binding proteins. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:151-156.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 151-156
-
-
Koh, H.R.1
-
12
-
-
0032535613
-
Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA
-
Ryter J.M., Schultz S.C. Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA. EMBO J. 1998, 17:7505-7513.
-
(1998)
EMBO J.
, vol.17
, pp. 7505-7513
-
-
Ryter, J.M.1
Schultz, S.C.2
-
13
-
-
84872873185
-
Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites
-
Hartman E., et al. Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites. J. Mol. Biol. 2013, 425:546-562.
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 546-562
-
-
Hartman, E.1
-
14
-
-
84899935773
-
Structure of a eukaryotic RNase III postcleavage complex reveals a double-ruler mechanism for substrate selection
-
Liang Y.H., et al. Structure of a eukaryotic RNase III postcleavage complex reveals a double-ruler mechanism for substrate selection. Mol. Cell 2014, 54:431-444.
-
(2014)
Mol. Cell
, vol.54
, pp. 431-444
-
-
Liang, Y.H.1
-
15
-
-
0026480392
-
A conserved double-stranded RNA-binding domain
-
St Johnston D., et al. A conserved double-stranded RNA-binding domain. Proc. Natl. Acad. Sci. U.S.A. 1992, 89:10979-10983.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 10979-10983
-
-
St Johnston, D.1
-
16
-
-
0029959285
-
Comparative mutational analysis of the double-stranded RNA binding domains of Xenopus laevis RNA-binding protein A
-
Krovat B.C., Jantsch M.F. Comparative mutational analysis of the double-stranded RNA binding domains of Xenopus laevis RNA-binding protein A. J. Biol. Chem. 1996, 271:28112-28119.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 28112-28119
-
-
Krovat, B.C.1
Jantsch, M.F.2
-
17
-
-
84876169592
-
Staufen1 dimerizes through a conserved motif and a degenerate dsRNA-binding domain to promote mRNA decay
-
Gleghorn M.L., et al. Staufen1 dimerizes through a conserved motif and a degenerate dsRNA-binding domain to promote mRNA decay. Nat. Struct. Mol. Biol. 2013, 20:515-524.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 515-524
-
-
Gleghorn, M.L.1
-
18
-
-
84869085954
-
Interdomain allostery promotes assembly of the poly(A) mRNA complex with PABP and eIF4G
-
Safaee N., et al. Interdomain allostery promotes assembly of the poly(A) mRNA complex with PABP and eIF4G. Mol. Cell 2012, 48:375-386.
-
(2012)
Mol. Cell
, vol.48
, pp. 375-386
-
-
Safaee, N.1
-
19
-
-
0031697802
-
The double-stranded RNA-binding domains of Xenopus laevis ADAR1 exhibit different RNA-binding behaviors
-
Brooks R., et al. The double-stranded RNA-binding domains of Xenopus laevis ADAR1 exhibit different RNA-binding behaviors. FEBS Lett. 1998, 434:121-126.
-
(1998)
FEBS Lett.
, vol.434
, pp. 121-126
-
-
Brooks, R.1
-
20
-
-
79961091137
-
Evolution of RNA-binding proteins in animals: insights from genome-wide analysis in the sponge Amphimedon queenslandica
-
Kerner P., et al. Evolution of RNA-binding proteins in animals: insights from genome-wide analysis in the sponge Amphimedon queenslandica. Mol. Biol. Evol. 2011, 28:2289-2303.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2289-2303
-
-
Kerner, P.1
-
21
-
-
18444380595
-
The double-stranded RNA-binding motif, a versatile macromolecular docking platform
-
Chang K.Y., Ramos A. The double-stranded RNA-binding motif, a versatile macromolecular docking platform. FEBS J. 2005, 272:2109-2117.
-
(2005)
FEBS J.
, vol.272
, pp. 2109-2117
-
-
Chang, K.Y.1
Ramos, A.2
-
22
-
-
0036966283
-
New and old roles of the double-stranded RNA-binding domain
-
Doyle M., Jantsch M.F. New and old roles of the double-stranded RNA-binding domain. J. Struct. Biol. 2002, 140:147-153.
-
(2002)
J. Struct. Biol.
, vol.140
, pp. 147-153
-
-
Doyle, M.1
Jantsch, M.F.2
-
23
-
-
0034192148
-
Proteins binding to duplexed RNA: one motif, multiple functions
-
Fierro-Monti I., Mathews M.B. Proteins binding to duplexed RNA: one motif, multiple functions. Trends Biochem. Sci. 2000, 25:241-246.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 241-246
-
-
Fierro-Monti, I.1
Mathews, M.B.2
-
24
-
-
84888426669
-
The central role of protein S12 in organizing the structure of the decoding site of the ribosome
-
Demirci H., et al. The central role of protein S12 in organizing the structure of the decoding site of the ribosome. RNA 2013, 19:1791-1801.
-
(2013)
RNA
, vol.19
, pp. 1791-1801
-
-
Demirci, H.1
-
25
-
-
0026687213
-
The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA
-
Ramakrishnan V., White S.W. The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA. Nature 1992, 358:768-771.
-
(1992)
Nature
, vol.358
, pp. 768-771
-
-
Ramakrishnan, V.1
White, S.W.2
-
26
-
-
84867222475
-
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65
-
Kogure H., et al. Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65. Proteins 2012, 80:2629-2642.
-
(2012)
Proteins
, vol.80
, pp. 2629-2642
-
-
Kogure, H.1
-
27
-
-
4143064788
-
Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome
-
Shin D.H., et al. Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. J. Mol. Biol. 2004, 341:227-239.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 227-239
-
-
Shin, D.H.1
-
28
-
-
55849143658
-
Insights into translational termination from the structure of RF2 bound to the ribosome
-
Weixlbaumer A., et al. Insights into translational termination from the structure of RF2 bound to the ribosome. Science 2008, 322:953-956.
-
(2008)
Science
, vol.322
, pp. 953-956
-
-
Weixlbaumer, A.1
-
29
-
-
0029658119
-
Models for the 3(10)-helix/coil, pi-helix/coil, and alpha-helix/3(10)-helix/coil transitions in isolated peptides
-
Rohl C.A., Doig A.J. Models for the 3(10)-helix/coil, pi-helix/coil, and alpha-helix/3(10)-helix/coil transitions in isolated peptides. Protein Sci. 1996, 5:1687-1696.
-
(1996)
Protein Sci.
, vol.5
, pp. 1687-1696
-
-
Rohl, C.A.1
Doig, A.J.2
-
30
-
-
49649099901
-
Structural basis for translation termination on the 70S ribosome
-
Laurberg M., et al. Structural basis for translation termination on the 70S ribosome. Nature 2008, 454:852-857.
-
(2008)
Nature
, vol.454
, pp. 852-857
-
-
Laurberg, M.1
-
31
-
-
67650312585
-
Molecular basis of the inhibitor selectivity and insights into the feedback inhibition mechanism of citramalate synthase from Leptospira interrogans
-
Zhang P., et al. Molecular basis of the inhibitor selectivity and insights into the feedback inhibition mechanism of citramalate synthase from Leptospira interrogans. Biochem. J. 2009, 421:133-143.
-
(2009)
Biochem. J.
, vol.421
, pp. 133-143
-
-
Zhang, P.1
-
32
-
-
33750990797
-
DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold
-
Dlakic M. DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold. Bioinformatics 2006, 22:2711-2714.
-
(2006)
Bioinformatics
, vol.22
, pp. 2711-2714
-
-
Dlakic, M.1
-
33
-
-
77149143536
-
Structure of the Arabidopsis thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction
-
Qin H., et al. Structure of the Arabidopsis thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction. RNA 2010, 16:474-481.
-
(2010)
RNA
, vol.16
, pp. 474-481
-
-
Qin, H.1
-
34
-
-
84861214424
-
How hibernation factors RMF, HPF, and YfiA turn off protein synthesis
-
Polikanov Y.S., et al. How hibernation factors RMF, HPF, and YfiA turn off protein synthesis. Science 2012, 336:915-918.
-
(2012)
Science
, vol.336
, pp. 915-918
-
-
Polikanov, Y.S.1
-
35
-
-
80054907588
-
An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer
-
Barraud P., et al. An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer. EMBO J. 2011, 30:4223-4235.
-
(2011)
EMBO J.
, vol.30
, pp. 4223-4235
-
-
Barraud, P.1
-
36
-
-
34548480185
-
Crystal structure of human DGCR8 core
-
Sohn S.Y., et al. Crystal structure of human DGCR8 core. Nat. Struct. Mol. Biol. 2007, 14:847-853.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 847-853
-
-
Sohn, S.Y.1
-
37
-
-
79960186717
-
The inside-out mechanism of Dicers from budding yeasts
-
Weinberg D.E., et al. The inside-out mechanism of Dicers from budding yeasts. Cell 2011, 146:262-276.
-
(2011)
Cell
, vol.146
, pp. 262-276
-
-
Weinberg, D.E.1
-
38
-
-
78650763143
-
Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein
-
Yamashita S., et al. Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein. Protein Sci. 2011, 20:118-130.
-
(2011)
Protein Sci.
, vol.20
, pp. 118-130
-
-
Yamashita, S.1
-
39
-
-
70349939426
-
Structural insights into mechanisms of the small RNA methyltransferase HEN1
-
Huang Y., et al. Structural insights into mechanisms of the small RNA methyltransferase HEN1. Nature 2009, 461:823-827.
-
(2009)
Nature
, vol.461
, pp. 823-827
-
-
Huang, Y.1
-
40
-
-
0345628581
-
Mammalian staufen is a double-stranded-RNA- and tubulin-binding protein which localizes to the rough endoplasmic reticulum
-
Wickham L., et al. Mammalian staufen is a double-stranded-RNA- and tubulin-binding protein which localizes to the rough endoplasmic reticulum. Mol. Cell. Biol. 1999, 19:2220-2230.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 2220-2230
-
-
Wickham, L.1
-
41
-
-
0034653570
-
Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation
-
Micklem D.R., et al. Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation. EMBO J. 2000, 19:1366-1377.
-
(2000)
EMBO J.
, vol.19
, pp. 1366-1377
-
-
Micklem, D.R.1
-
42
-
-
77149145510
-
Multimerization of Staufen1 in live cells
-
Martel C., et al. Multimerization of Staufen1 in live cells. RNA 2010, 16:585-597.
-
(2010)
RNA
, vol.16
, pp. 585-597
-
-
Martel, C.1
-
43
-
-
0035171849
-
Two rat brain staufen isoforms differentially bind RNA
-
Monshausen M., et al. Two rat brain staufen isoforms differentially bind RNA. J. Neurochem. 2001, 76:155-165.
-
(2001)
J. Neurochem.
, vol.76
, pp. 155-165
-
-
Monshausen, M.1
-
44
-
-
0029041105
-
NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5
-
Bycroft M., et al. NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5. EMBO J. 1995, 14:3563-3571.
-
(1995)
EMBO J.
, vol.14
, pp. 3563-3571
-
-
Bycroft, M.1
-
45
-
-
84892797558
-
Architecture of the large subunit of the mammalian mitochondrial ribosome
-
Greber B.J., et al. Architecture of the large subunit of the mammalian mitochondrial ribosome. Nature 2013, 505:515-519.
-
(2013)
Nature
, vol.505
, pp. 515-519
-
-
Greber, B.J.1
-
46
-
-
24144457783
-
Interaction of Staufen1 with the 5' end of mRNA facilitates translation of these RNAs
-
Dugre-Brisson S., et al. Interaction of Staufen1 with the 5' end of mRNA facilitates translation of these RNAs. Nucleic Acids Res. 2005, 33:4797-4812.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4797-4812
-
-
Dugre-Brisson, S.1
-
47
-
-
0036685161
-
Molecular mapping of the determinants involved in human Staufen-ribosome association
-
Luo M., et al. Molecular mapping of the determinants involved in human Staufen-ribosome association. Biochem. J. 2002, 365:817-824.
-
(2002)
Biochem. J.
, vol.365
, pp. 817-824
-
-
Luo, M.1
-
48
-
-
84893725356
-
Staufen1 senses overall transcript secondary structure to regulate translation
-
Ricci E.P., et al. Staufen1 senses overall transcript secondary structure to regulate translation. Nat. Struct. Mol. Biol. 2014, 21:26-35.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 26-35
-
-
Ricci, E.P.1
-
49
-
-
84903464120
-
Ribosomal protein S5, ribosome biogenesis and translational fidelity
-
Springer Vienna, M. Rodnina (Ed.)
-
Roy-Chaudhuri B., et al. Ribosomal protein S5, ribosome biogenesis and translational fidelity. Ribosomes 2011, 263-270. Springer Vienna. M. Rodnina (Ed.).
-
(2011)
Ribosomes
, pp. 263-270
-
-
Roy-Chaudhuri, B.1
-
50
-
-
45849141942
-
Interactions between the double-stranded RNA-binding proteins TRBP and PACT define the Medipal domain that mediates protein-protein interactions
-
Laraki G., et al. Interactions between the double-stranded RNA-binding proteins TRBP and PACT define the Medipal domain that mediates protein-protein interactions. RNA Biol. 2008, 5:92-103.
-
(2008)
RNA Biol.
, vol.5
, pp. 92-103
-
-
Laraki, G.1
-
51
-
-
77954947916
-
Activation of the antiviral kinase PKR and viral countermeasures
-
Dauber B., Wolff T. Activation of the antiviral kinase PKR and viral countermeasures. Viruses 2009, 1:523-544.
-
(2009)
Viruses
, vol.1
, pp. 523-544
-
-
Dauber, B.1
Wolff, T.2
-
52
-
-
70349283034
-
ADAR1 interacts with PKR during human immunodeficiency virus infection of lymphocytes and contributes to viral replication
-
Clerzius G., et al. ADAR1 interacts with PKR during human immunodeficiency virus infection of lymphocytes and contributes to viral replication. J. Virol. 2009, 83:10119-10128.
-
(2009)
J. Virol.
, vol.83
, pp. 10119-10128
-
-
Clerzius, G.1
-
53
-
-
0034654227
-
A new double-stranded RNA-binding protein that interacts with PKR
-
Coolidge C.J., Patton J.G. A new double-stranded RNA-binding protein that interacts with PKR. Nucleic Acids Res. 2000, 28:1407-1417.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1407-1417
-
-
Coolidge, C.J.1
Patton, J.G.2
-
54
-
-
58149463628
-
TRBP control of PACT-induced phosphorylation of protein kinase R is reversed by stress
-
Daher A., et al. TRBP control of PACT-induced phosphorylation of protein kinase R is reversed by stress. Mol. Cell. Biol. 2009, 29:254-265.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 254-265
-
-
Daher, A.1
-
55
-
-
33846073016
-
Double-stranded RNA deaminase ADAR1 increases host susceptibility to virus infection
-
Nie Y., et al. Double-stranded RNA deaminase ADAR1 increases host susceptibility to virus infection. J. Virol. 2007, 81:917-923.
-
(2007)
J. Virol.
, vol.81
, pp. 917-923
-
-
Nie, Y.1
-
56
-
-
84898623891
-
NF90 exerts antiviral activity through regulation of PKR phosphorylation and stress granules in infected cells
-
Wen X., et al. NF90 exerts antiviral activity through regulation of PKR phosphorylation and stress granules in infected cells. J. Immunol. 2014, 192:3753-3764.
-
(2014)
J. Immunol.
, vol.192
, pp. 3753-3764
-
-
Wen, X.1
-
57
-
-
33745627468
-
Molecular basis for PKR activation by PACT or dsRNA
-
Li S., et al. Molecular basis for PKR activation by PACT or dsRNA. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:10005-10010.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 10005-10010
-
-
Li, S.1
-
58
-
-
84862756078
-
Molecular evolution of dihydrouridine synthases
-
Kasprzak J.M., et al. Molecular evolution of dihydrouridine synthases. BMC Bioinformatics 2012, 13:153.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 153
-
-
Kasprzak, J.M.1
-
59
-
-
39449113635
-
Interaction of human tRNA-dihydrouridine synthase-2 with interferon-induced protein kinase PKR
-
Mittelstadt M., et al. Interaction of human tRNA-dihydrouridine synthase-2 with interferon-induced protein kinase PKR. Nucleic Acids Res. 2008, 36:998-1008.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 998-1008
-
-
Mittelstadt, M.1
-
60
-
-
4444248655
-
Oligomerization activity of a double-stranded RNA-binding domain
-
Hitti E.G., et al. Oligomerization activity of a double-stranded RNA-binding domain. FEBS Lett. 2004, 574:25-30.
-
(2004)
FEBS Lett.
, vol.574
, pp. 25-30
-
-
Hitti, E.G.1
-
62
-
-
84872195078
-
Staufen2 functions in Staufen1-mediated mRNA decay by binding to itself and its paralog and promoting UPF1 helicase but not ATPase activity
-
Park E., et al. Staufen2 functions in Staufen1-mediated mRNA decay by binding to itself and its paralog and promoting UPF1 helicase but not ATPase activity. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:405-412.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 405-412
-
-
Park, E.1
-
63
-
-
77955119567
-
DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures
-
Faller M., et al. DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures. RNA 2010, 16:1570-1583.
-
(2010)
RNA
, vol.16
, pp. 1570-1583
-
-
Faller, M.1
-
64
-
-
84899893118
-
A bimodular nuclear localization signal assembled via an extended double-stranded RNA-binding domain acts as an RNA-sensing signal for transportin 1
-
Barraud P., et al. A bimodular nuclear localization signal assembled via an extended double-stranded RNA-binding domain acts as an RNA-sensing signal for transportin 1. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:E1852-E1861.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
-
-
Barraud, P.1
-
65
-
-
30044443622
-
Staufen1 is imported into the nucleolus via a bipartite nuclear localization signal and several modulatory determinants
-
Martel C., et al. Staufen1 is imported into the nucleolus via a bipartite nuclear localization signal and several modulatory determinants. Biochem. J. 2006, 393:245-254.
-
(2006)
Biochem. J.
, vol.393
, pp. 245-254
-
-
Martel, C.1
-
66
-
-
9144271779
-
Alternative splicing of Staufen2 creates the nuclear export signal for CRM1 (Exportin 1)
-
Miki T., Yoneda Y. Alternative splicing of Staufen2 creates the nuclear export signal for CRM1 (Exportin 1). J. Biol. Chem. 2004, 279:47473-47479.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 47473-47479
-
-
Miki, T.1
Yoneda, Y.2
-
67
-
-
78349307235
-
Substrate-specific kinetics of Dicer-catalyzed RNA processing
-
Chakravarthy S., et al. Substrate-specific kinetics of Dicer-catalyzed RNA processing. J. Mol. Biol. 2010, 404:392-402.
-
(2010)
J. Mol. Biol.
, vol.404
, pp. 392-402
-
-
Chakravarthy, S.1
-
68
-
-
84865727711
-
The multiple functions of TRBP, at the hub of cell responses to viruses, stress, and cancer
-
Daniels S.M., Gatignol A. The multiple functions of TRBP, at the hub of cell responses to viruses, stress, and cancer. Microbiol. Mol. Biol. Rev. 2012, 76:652-666.
-
(2012)
Microbiol. Mol. Biol. Rev.
, vol.76
, pp. 652-666
-
-
Daniels, S.M.1
Gatignol, A.2
-
69
-
-
56249098241
-
DsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi
-
Parker G.S., et al. dsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi. J. Mol. Biol. 2008, 384:967-979.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 967-979
-
-
Parker, G.S.1
-
70
-
-
70350783745
-
Structural insights into RNA processing by the human RISC-loading complex
-
Wang H.W., et al. Structural insights into RNA processing by the human RISC-loading complex. Nat. Struct. Mol. Biol. 2009, 16:1148-1153.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1148-1153
-
-
Wang, H.W.1
-
71
-
-
32544460452
-
The role of PACT in the RNA silencing pathway
-
Lee Y., et al. The role of PACT in the RNA silencing pathway. EMBO J. 2006, 25:522-532.
-
(2006)
EMBO J.
, vol.25
, pp. 522-532
-
-
Lee, Y.1
-
72
-
-
23244467710
-
MicroRNAs: Loquacious speaks out
-
Leuschner P.J., et al. MicroRNAs: Loquacious speaks out. Curr. Biol. 2005, 15:R603-R605.
-
(2005)
Curr. Biol.
, vol.15
-
-
Leuschner, P.J.1
-
73
-
-
35349023128
-
Functional anatomy of the Drosophila microRNA-generating enzyme
-
Ye X., et al. Functional anatomy of the Drosophila microRNA-generating enzyme. J. Biol. Chem. 2007, 282:28373-28378.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 28373-28378
-
-
Ye, X.1
-
74
-
-
84876892072
-
ADAR1 forms a complex with Dicer to promote microRNA processing and RNA-induced gene silencing
-
Ota H., et al. ADAR1 forms a complex with Dicer to promote microRNA processing and RNA-induced gene silencing. Cell 2013, 153:575-589.
-
(2013)
Cell
, vol.153
, pp. 575-589
-
-
Ota, H.1
-
75
-
-
20244378840
-
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana
-
Hiraguri A., et al. Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol. Biol. 2005, 57:173-188.
-
(2005)
Plant Mol. Biol.
, vol.57
, pp. 173-188
-
-
Hiraguri, A.1
-
76
-
-
79953011158
-
Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4
-
Fukudome A., et al. Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4. RNA 2011, 17:750-760.
-
(2011)
RNA
, vol.17
, pp. 750-760
-
-
Fukudome, A.1
-
77
-
-
84860113120
-
APC/C-mediated degradation of dsRNA-binding protein 4 (DRB4) involved in RNA silencing
-
Marrocco K., et al. APC/C-mediated degradation of dsRNA-binding protein 4 (DRB4) involved in RNA silencing. PLoS ONE 2012, 7:e35173.
-
(2012)
PLoS ONE
, vol.7
-
-
Marrocco, K.1
-
78
-
-
84859350087
-
RNAi keeps Atf1-bound stress response genes in check at nuclear pores
-
Woolcock K.J., et al. RNAi keeps Atf1-bound stress response genes in check at nuclear pores. Genes Dev. 2012, 26:683-692.
-
(2012)
Genes Dev.
, vol.26
, pp. 683-692
-
-
Woolcock, K.J.1
-
79
-
-
84887316535
-
A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis
-
Chen T., et al. A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis. PLoS Genet. 2013, 9:e1003875.
-
(2013)
PLoS Genet.
, vol.9
-
-
Chen, T.1
-
80
-
-
77955582184
-
SF1 and SF2 helicases: family matters
-
Fairman-Williams M.E., et al. SF1 and SF2 helicases: family matters. Curr. Opin. Struct. Biol. 2010, 20:313-324.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 313-324
-
-
Fairman-Williams, M.E.1
-
81
-
-
35748932681
-
Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells
-
Hock J., et al. Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells. EMBO Rep. 2007, 8:1052-1060.
-
(2007)
EMBO Rep.
, vol.8
, pp. 1052-1060
-
-
Hock, J.1
-
82
-
-
43549116789
-
Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila
-
Lim do H., et al. Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila. Biochem. Biophys. Res. Commun. 2008, 371:525-530.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.371
, pp. 525-530
-
-
Lim do, H.1
-
83
-
-
0036671363
-
Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form
-
Kagawa W., et al. Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form. Mol. Cell 2002, 10:359-371.
-
(2002)
Mol. Cell
, vol.10
, pp. 359-371
-
-
Kagawa, W.1
-
84
-
-
0037108889
-
Structure of the single-strand annealing domain of human RAD52 protein
-
Singleton M.R., et al. Structure of the single-strand annealing domain of human RAD52 protein. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:13492-13497.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 13492-13497
-
-
Singleton, M.R.1
-
85
-
-
53049093612
-
Identification of a second DNA binding site in the human Rad52 protein
-
Kagawa W., et al. Identification of a second DNA binding site in the human Rad52 protein. J. Biol. Chem. 2008, 283:24264-24273.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 24264-24273
-
-
Kagawa, W.1
-
86
-
-
48149097525
-
Functional and structural basis for a bacteriophage homolog of human RAD52
-
Ploquin M., et al. Functional and structural basis for a bacteriophage homolog of human RAD52. Curr. Biol. 2008, 18:1142-1146.
-
(2008)
Curr. Biol.
, vol.18
, pp. 1142-1146
-
-
Ploquin, M.1
-
87
-
-
0030926002
-
The crystal structure of the signal recognition particle Alu RNA binding heterodimer, SRP9/14
-
Birse D.E., et al. The crystal structure of the signal recognition particle Alu RNA binding heterodimer, SRP9/14. EMBO J. 1997, 16:3757-3766.
-
(1997)
EMBO J.
, vol.16
, pp. 3757-3766
-
-
Birse, D.E.1
-
88
-
-
0034626729
-
Structure and assembly of the Alu domain of the mammalian signal recognition particle
-
Weichenrieder O., et al. Structure and assembly of the Alu domain of the mammalian signal recognition particle. Nature 2000, 408:167-173.
-
(2000)
Nature
, vol.408
, pp. 167-173
-
-
Weichenrieder, O.1
-
89
-
-
79951826865
-
The crystal structure of the signal recognition particle in complex with its receptor
-
Ataide S.F., et al. The crystal structure of the signal recognition particle in complex with its receptor. Science 2011, 331:881-886.
-
(2011)
Science
, vol.331
, pp. 881-886
-
-
Ataide, S.F.1
-
90
-
-
1542319100
-
Structure of the signal recognition particle interacting with the elongation-arrested ribosome
-
Halic M., et al. Structure of the signal recognition particle interacting with the elongation-arrested ribosome. Nature 2004, 427:808-814.
-
(2004)
Nature
, vol.427
, pp. 808-814
-
-
Halic, M.1
-
91
-
-
0036468678
-
Towards the structure of the mammalian signal recognition particle
-
Wild K., et al. Towards the structure of the mammalian signal recognition particle. Curr. Opin. Struct. Biol. 2002, 12:72-81.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 72-81
-
-
Wild, K.1
-
92
-
-
84872604349
-
Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5
-
Wu B., et al. Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5. Cell 2013, 152:276-289.
-
(2013)
Cell
, vol.152
, pp. 276-289
-
-
Wu, B.1
-
93
-
-
84867064003
-
Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p
-
Mallam A.L., et al. Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p. Nature 2012, 490:121-125.
-
(2012)
Nature
, vol.490
, pp. 121-125
-
-
Mallam, A.L.1
-
94
-
-
84872474666
-
Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex
-
Tan D., et al. Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex. Science 2013, 339:318-321.
-
(2013)
Science
, vol.339
, pp. 318-321
-
-
Tan, D.1
-
95
-
-
84876374789
-
Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9)
-
Fu Q., Yuan Y.A. Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9). Nucleic Acids Res. 2013, 41:3457-3470.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 3457-3470
-
-
Fu, Q.1
Yuan, Y.A.2
-
96
-
-
77952633582
-
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing
-
Yang S.W., et al. Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing. Structure 2010, 18:594-605.
-
(2010)
Structure
, vol.18
, pp. 594-605
-
-
Yang, S.W.1
-
97
-
-
84892917225
-
Structure of RDE-4 dsRBDs and mutational studies provide insights into dsRNA recognition in the Caenorhabditis elegans RNAi pathway
-
Chiliveri S.C., Deshmukh M.V. Structure of RDE-4 dsRBDs and mutational studies provide insights into dsRNA recognition in the Caenorhabditis elegans RNAi pathway. Biochem. J. 2014, 458:119-130.
-
(2014)
Biochem. J.
, vol.458
, pp. 119-130
-
-
Chiliveri, S.C.1
Deshmukh, M.V.2
-
98
-
-
26444436343
-
Intermediate states of ribonuclease III in complex with double-stranded RNA
-
Gan J., et al. Intermediate states of ribonuclease III in complex with double-stranded RNA. Structure 2005, 13:1435-1442.
-
(2005)
Structure
, vol.13
, pp. 1435-1442
-
-
Gan, J.1
-
99
-
-
40649086065
-
Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage
-
Du Z., et al. Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:2391-2396.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 2391-2396
-
-
Du, Z.1
-
100
-
-
33748462446
-
Miranda couples oskar mRNA/Staufen complexes to the bicoid mRNA localization pathway
-
Irion U., et al. Miranda couples oskar mRNA/Staufen complexes to the bicoid mRNA localization pathway. Dev. Biol. 2006, 297:522-533.
-
(2006)
Dev. Biol.
, vol.297
, pp. 522-533
-
-
Irion, U.1
|