-
1
-
-
19344378943
-
Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors
-
Bentley DL, (2005) Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr Opin Cell Biol 17: 251-256.
-
(2005)
Curr Opin Cell Biol
, vol.17
, pp. 251-256
-
-
Bentley, D.L.1
-
2
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
Buratowski S, (2009) Progression through the RNA polymerase II CTD cycle. Mol Cell 36: 541-546.
-
(2009)
Mol Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
3
-
-
84867160564
-
The RNA polymerase II CTD coordinates transcription and RNA processing
-
Hsin JP, Manley JL, (2012) The RNA polymerase II CTD coordinates transcription and RNA processing. Genes Dev 26: 2119-2137.
-
(2012)
Genes Dev
, vol.26
, pp. 2119-2137
-
-
Hsin, J.P.1
Manley, J.L.2
-
4
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
-
Komarnitsky P, Cho EJ, Buratowski S, (2000) Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev 14: 2452-2460.
-
(2000)
Genes Dev
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
5
-
-
1542334001
-
Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3′ end processing
-
Ahn SH, Kim M, Buratowski S, (2004) Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3′ end processing. Mol Cell 13: 67-76.
-
(2004)
Mol Cell
, vol.13
, pp. 67-76
-
-
Ahn, S.H.1
Kim, M.2
Buratowski, S.3
-
6
-
-
60349104299
-
The spliceosome: design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Luhrmann R, (2009) The spliceosome: design principles of a dynamic RNP machine. Cell 136: 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
7
-
-
84859293997
-
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
-
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, et al. (2012) Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res 40: 2454-2469.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2454-2469
-
-
Kalyna, M.1
Simpson, C.G.2
Syed, N.H.3
Lewandowska, D.4
Marquez, Y.5
-
8
-
-
4944241489
-
Intron retention is a major phenomenon in alternative splicing in Arabidopsis
-
Ner-Gaon H, Halachmi R, Savaldi-Goldstein S, Rubin E, Ophir R, et al. (2004) Intron retention is a major phenomenon in alternative splicing in Arabidopsis. Plant J 39: 877-885.
-
(2004)
Plant J
, vol.39
, pp. 877-885
-
-
Ner-Gaon, H.1
Halachmi, R.2
Savaldi-Goldstein, S.3
Rubin, E.4
Ophir, R.5
-
9
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: opportunities and challenges
-
Barbazuk WB, Fu Y, McGinnis KM, (2008) Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res 18: 1381-1392.
-
(2008)
Genome Res
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
-
10
-
-
84861890038
-
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
-
Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M, (2012) Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res 22: 1184-1195.
-
(2012)
Genome Res
, vol.22
, pp. 1184-1195
-
-
Marquez, Y.1
Brown, J.W.2
Simpson, C.3
Barta, A.4
Kalyna, M.5
-
11
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, et al. (2010) Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res 20: 45-58.
-
(2010)
Genome Res
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.4
Bryant, D.W.5
-
12
-
-
34250813107
-
Alternative splicing of pre-messenger RNAs in plants in the genomic era
-
Reddy AS, (2007) Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu Rev Plant Biol 58: 267-294.
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 267-294
-
-
Reddy, A.S.1
-
13
-
-
14644445227
-
SRprises along a messenger's journey
-
Huang Y, Steitz JA, (2005) SRprises along a messenger's journey. Mol Cell 17: 613-615.
-
(2005)
Mol Cell
, vol.17
, pp. 613-615
-
-
Huang, Y.1
Steitz, J.A.2
-
14
-
-
58249093940
-
The SR protein family of splicing factors: master regulators of gene expression
-
Long JC, Caceres JF, (2009) The SR protein family of splicing factors: master regulators of gene expression. Biochem J 417: 15-27.
-
(2009)
Biochem J
, vol.417
, pp. 15-27
-
-
Long, J.C.1
Caceres, J.F.2
-
15
-
-
0035823247
-
Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1
-
Lykke-Andersen J, Shu MD, Steitz JA, (2001) Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1. Science 293: 1836-1839.
-
(2001)
Science
, vol.293
, pp. 1836-1839
-
-
Lykke-Andersen, J.1
Shu, M.D.2
Steitz, J.A.3
-
16
-
-
67649671966
-
SR proteins in vertical integration of gene expression from transcription to RNA processing to translation
-
Zhong XY, Wang P, Han J, Rosenfeld MG, Fu XD, (2009) SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Mol Cell 35: 1-10.
-
(2009)
Mol Cell
, vol.35
, pp. 1-10
-
-
Zhong, X.Y.1
Wang, P.2
Han, J.3
Rosenfeld, M.G.4
Fu, X.D.5
-
17
-
-
78049455373
-
Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants
-
Barta A, Kalyna M, Reddy AS, (2010) Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants. Plant Cell 22: 2926-2929.
-
(2010)
Plant Cell
, vol.22
, pp. 2926-2929
-
-
Barta, A.1
Kalyna, M.2
Reddy, A.S.3
-
18
-
-
33847343883
-
Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses
-
Palusa SG, Ali GS, Reddy AS, (2007) Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses. Plant J 49: 1091-1107.
-
(2007)
Plant J
, vol.49
, pp. 1091-1107
-
-
Palusa, S.G.1
Ali, G.S.2
Reddy, A.S.3
-
19
-
-
78650488766
-
Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing
-
Deng X, Gu L, Liu C, Lu T, Lu F, et al. (2010) Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing. Proc Natl Acad Sci U S A 107: 19114-19119.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 19114-19119
-
-
Deng, X.1
Gu, L.2
Liu, C.3
Lu, T.4
Lu, F.5
-
20
-
-
34547672823
-
Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress
-
Tanabe N, Yoshimura K, Kimura A, Yabuta Y, Shigeoka S, (2007) Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress. Plant Cell Physiol 48: 1036-1049.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 1036-1049
-
-
Tanabe, N.1
Yoshimura, K.2
Kimura, A.3
Yabuta, Y.4
Shigeoka, S.5
-
21
-
-
84858592281
-
Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a
-
Gulledge AA, Roberts AD, Vora H, Patel K, Loraine AE, (2012) Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a. Am J Bot 99: 219-231.
-
(2012)
Am J Bot
, vol.99
, pp. 219-231
-
-
Gulledge, A.A.1
Roberts, A.D.2
Vora, H.3
Patel, K.4
Loraine, A.E.5
-
22
-
-
0031277694
-
Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways
-
Ishitani M, Xiong L, Stevenson B, Zhu JK, (1997) Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 9: 1935-1949.
-
(1997)
Plant Cell
, vol.9
, pp. 1935-1949
-
-
Ishitani, M.1
Xiong, L.2
Stevenson, B.3
Zhu, J.K.4
-
23
-
-
0033198503
-
HOS5-a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana
-
Xiong L, Ishitani M, Lee H, Zhu JK, (1999) HOS5-a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana. Plant J 19: 569-578.
-
(1999)
Plant J
, vol.19
, pp. 569-578
-
-
Xiong, L.1
Ishitani, M.2
Lee, H.3
Zhu, J.K.4
-
24
-
-
84875593659
-
A KH Domain-containing putative RNA-binding protein is critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis
-
Guan Q, Wen C, Zeng H, Zhu J, (2013) A KH Domain-containing putative RNA-binding protein is critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Mol Plant 6: 386-395.
-
(2013)
Mol Plant
, vol.6
, pp. 386-395
-
-
Guan, Q.1
Wen, C.2
Zeng, H.3
Zhu, J.4
-
25
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
Kelley LA, Sternberg MJ, (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371.
-
(2009)
Nat Protoc
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
26
-
-
53249142139
-
Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication
-
Fujisaki K, Ishikawa M, (2008) Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication. Virology 380: 402-411.
-
(2008)
Virology
, vol.380
, pp. 402-411
-
-
Fujisaki, K.1
Ishikawa, M.2
-
27
-
-
3042803315
-
Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells
-
Lorkovic ZJ, Hilscher J, Barta A, (2004) Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Mol Biol Cell 15: 3233-3243.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 3233-3243
-
-
Lorkovic, Z.J.1
Hilscher, J.2
Barta, A.3
-
28
-
-
67651122830
-
Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia
-
Koroleva OA, Calder G, Pendle AF, Kim SH, Lewandowska D, et al. (2009) Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell 21: 1592-1606.
-
(2009)
Plant Cell
, vol.21
, pp. 1592-1606
-
-
Koroleva, O.A.1
Calder, G.2
Pendle, A.F.3
Kim, S.H.4
Lewandowska, D.5
-
29
-
-
34447099171
-
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
-
Yoo SD, Cho YH, Sheen J, (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc 2: 1565-1572.
-
(2007)
Nat Protoc
, vol.2
, pp. 1565-1572
-
-
Yoo, S.D.1
Cho, Y.H.2
Sheen, J.3
-
30
-
-
0036677467
-
Repression of stress-responsive genes by FIERY2, a novel transcriptional regulator in Arabidopsis
-
Xiong L, Lee H, Ishitani M, Tanaka Y, Stevenson B, et al. (2002) Repression of stress-responsive genes by FIERY2, a novel transcriptional regulator in Arabidopsis. Proc Natl Acad Sci U S A 99: 10899-10904.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 10899-10904
-
-
Xiong, L.1
Lee, H.2
Ishitani, M.3
Tanaka, Y.4
Stevenson, B.5
-
31
-
-
5144224201
-
Arabidopsis C-terminal domain phosphatase-like 1 and 2 are essential Ser-5-specific C-terminal domain phosphatases
-
Koiwa H, Hausmann S, Bang WY, Ueda A, Kondo N, et al. (2004) Arabidopsis C-terminal domain phosphatase-like 1 and 2 are essential Ser-5-specific C-terminal domain phosphatases. Proc Natl Acad Sci U S A 101: 14539-14544.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 14539-14544
-
-
Koiwa, H.1
Hausmann, S.2
Bang, W.Y.3
Ueda, A.4
Kondo, N.5
-
32
-
-
0036678452
-
C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development
-
Koiwa H, Barb AW, Xiong L, Li F, McCully MG, et al. (2002) C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development. Proc Natl Acad Sci U S A 99: 10893-10898.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 10893-10898
-
-
Koiwa, H.1
Barb, A.W.2
Xiong, L.3
Li, F.4
McCully, M.G.5
-
33
-
-
0034192148
-
Proteins binding to duplexed RNA: one motif, multiple functions
-
Fierro-Monti I, Mathews MB, (2000) Proteins binding to duplexed RNA: one motif, multiple functions. Trends Biochem Sci 25: 241-246.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 241-246
-
-
Fierro-Monti, I.1
Mathews, M.B.2
-
34
-
-
0033592896
-
Splicing is required for rapid and efficient mRNA export in metazoans
-
Luo MJ, Reed R, (1999) Splicing is required for rapid and efficient mRNA export in metazoans. Proc Natl Acad Sci U S A 96: 14937-14942.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 14937-14942
-
-
Luo, M.J.1
Reed, R.2
-
35
-
-
42149178405
-
Splicing promotes rapid and efficient mRNA export in mammalian cells
-
Valencia P, Dias AP, Reed R, (2008) Splicing promotes rapid and efficient mRNA export in mammalian cells. Proc Natl Acad Sci U S A 105: 3386-3391.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 3386-3391
-
-
Valencia, P.1
Dias, A.P.2
Reed, R.3
-
36
-
-
0037329942
-
The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters
-
Cheng NH, Pittman JK, Barkla BJ, Shigaki T, Hirschi KD, (2003) The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters. Plant Cell 15: 347-364.
-
(2003)
Plant Cell
, vol.15
, pp. 347-364
-
-
Cheng, N.H.1
Pittman, J.K.2
Barkla, B.J.3
Shigaki, T.4
Hirschi, K.D.5
-
37
-
-
49449084595
-
Calcineurin-B-like protein CBL9 interacts with target kinase CIPK3 in the regulation of ABA response in seed germination
-
Pandey GK, Grant JJ, Cheong YH, Kim BG, Li le G, et al. (2008) Calcineurin-B-like protein CBL9 interacts with target kinase CIPK3 in the regulation of ABA response in seed germination. Mol Plant 1: 238-248.
-
(2008)
Mol Plant
, vol.1
, pp. 238-248
-
-
Pandey, G.K.1
Grant, J.J.2
Cheong, Y.H.3
Kim, B.G.4
Li le, G.5
-
38
-
-
0035032021
-
Developmental and stress regulation of RCI2A and RCI2B, two cold-inducible genes of Arabidopsis encoding highly conserved hydrophobic proteins
-
Medina J, Catala R, Salinas J, (2001) Developmental and stress regulation of RCI2A and RCI2B, two cold-inducible genes of Arabidopsis encoding highly conserved hydrophobic proteins. Plant Physiol 125: 1655-1666.
-
(2001)
Plant Physiol
, vol.125
, pp. 1655-1666
-
-
Medina, J.1
Catala, R.2
Salinas, J.3
-
39
-
-
78650515646
-
Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis
-
Krishnaswamy S, Verma S, Rahman MH, Kav NN, (2011) Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. Plant Mol Biol 75: 107-127.
-
(2011)
Plant Mol Biol
, vol.75
, pp. 107-127
-
-
Krishnaswamy, S.1
Verma, S.2
Rahman, M.H.3
Kav, N.N.4
-
40
-
-
0027273728
-
The pre-mRNA binding K protein contains a novel evolutionarily conserved motif
-
Siomi H, Matunis MJ, Michael WM, Dreyfuss G, (1993) The pre-mRNA binding K protein contains a novel evolutionarily conserved motif. Nucleic Acids Res 21: 1193-1198.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 1193-1198
-
-
Siomi, H.1
Matunis, M.J.2
Michael, W.M.3
Dreyfuss, G.4
-
41
-
-
0035253621
-
KH domain: one motif, two folds
-
Grishin NV, (2001) KH domain: one motif, two folds. Nucleic Acids Res 29: 638-643.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 638-643
-
-
Grishin, N.V.1
-
42
-
-
0027327486
-
The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein
-
Siomi H, Siomi MC, Nussbaum RL, Dreyfuss G, (1993) The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein. Cell 74: 291-298.
-
(1993)
Cell
, vol.74
, pp. 291-298
-
-
Siomi, H.1
Siomi, M.C.2
Nussbaum, R.L.3
Dreyfuss, G.4
-
43
-
-
0033612241
-
KH domain-containing proteins of yeast: absence of a fragile X gene homologue
-
Currie JR, Brown WT, (1999) KH domain-containing proteins of yeast: absence of a fragile X gene homologue. Am J Med Genet 84: 272-276.
-
(1999)
Am J Med Genet
, vol.84
, pp. 272-276
-
-
Currie, J.R.1
Brown, W.T.2
-
44
-
-
0036464536
-
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana
-
Lorkovic ZJ, Barta A, (2002) Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res 30: 623-635.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 623-635
-
-
Lorkovic, Z.J.1
Barta, A.2
-
45
-
-
0030592578
-
MEX-3 is a KH domain protein that regulates blastomere identity in early C. elegans embryos
-
Draper BW, Mello CC, Bowerman B, Hardin J, Priess JR, (1996) MEX-3 is a KH domain protein that regulates blastomere identity in early C. elegans embryos. Cell 87: 205-216.
-
(1996)
Cell
, vol.87
, pp. 205-216
-
-
Draper, B.W.1
Mello, C.C.2
Bowerman, B.3
Hardin, J.4
Priess, J.R.5
-
46
-
-
0037239887
-
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana
-
Cheng Y, Kato N, Wang W, Li J, Chen X, (2003) Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana. Dev Cell 4: 53-66.
-
(2003)
Dev Cell
, vol.4
, pp. 53-66
-
-
Cheng, Y.1
Kato, N.2
Wang, W.3
Li, J.4
Chen, X.5
-
47
-
-
12144286231
-
A new Arabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C
-
Lim MH, Kim J, Kim YS, Chung KS, Seo YH, et al. (2004) A new Arabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C. Plant Cell 16: 731-740.
-
(2004)
Plant Cell
, vol.16
, pp. 731-740
-
-
Lim, M.H.1
Kim, J.2
Kim, Y.S.3
Chung, K.S.4
Seo, Y.H.5
-
48
-
-
4344596213
-
Regulation of flowering time in Arabidopsis by K homology domain proteins
-
Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, et al. (2004) Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A 101: 12759-12764.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 12759-12764
-
-
Mockler, T.C.1
Yu, X.2
Shalitin, D.3
Parikh, D.4
Michael, T.P.5
-
49
-
-
69049119039
-
Antagonistic interactions between Arabidopsis K-homology domain genes uncover PEPPER as a positive regulator of the central floral repressor FLOWERING LOCUS C
-
Ripoll JJ, Rodriguez-Cazorla E, Gonzalez-Reig S, Andujar A, Alonso-Cantabrana H, et al. (2009) Antagonistic interactions between Arabidopsis K-homology domain genes uncover PEPPER as a positive regulator of the central floral repressor FLOWERING LOCUS C. Dev Biol 333: 251-262.
-
(2009)
Dev Biol
, vol.333
, pp. 251-262
-
-
Ripoll, J.J.1
Rodriguez-Cazorla, E.2
Gonzalez-Reig, S.3
Andujar, A.4
Alonso-Cantabrana, H.5
-
50
-
-
0028865525
-
Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo
-
Cosentino GP, Venkatesan S, Serluca FC, Green SR, Mathews MB, et al. (1995) Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo. Proc Natl Acad Sci U S A 92: 9445-9449.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 9445-9449
-
-
Cosentino, G.P.1
Venkatesan, S.2
Serluca, F.C.3
Green, S.R.4
Mathews, M.B.5
-
51
-
-
0029115903
-
The interferon-inducible double-stranded RNA-activated protein kinase self-associates in vitro and in vivo
-
Patel RC, Stanton P, McMillan NM, Williams BR, Sen GC, (1995) The interferon-inducible double-stranded RNA-activated protein kinase self-associates in vitro and in vivo. Proc Natl Acad Sci U S A 92: 8283-8287.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 8283-8287
-
-
Patel, R.C.1
Stanton, P.2
McMillan, N.M.3
Williams, B.R.4
Sen, G.C.5
-
52
-
-
78149325316
-
Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform
-
Nakel K, Hartung SA, Bonneau F, Eckmann CR, Conti E, (2010) Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform. RNA 16: 2058-2067.
-
(2010)
RNA
, vol.16
, pp. 2058-2067
-
-
Nakel, K.1
Hartung, S.A.2
Bonneau, F.3
Eckmann, C.R.4
Conti, E.5
-
54
-
-
79955691547
-
The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex
-
David CJ, Boyne AR, Millhouse SR, Manley JL, (2011) The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex. Genes Dev 25: 972-983.
-
(2011)
Genes Dev
, vol.25
, pp. 972-983
-
-
David, C.J.1
Boyne, A.R.2
Millhouse, S.R.3
Manley, J.L.4
-
55
-
-
34250363024
-
SR proteins function in coupling RNAP II transcription to pre-mRNA splicing
-
Das R, Yu J, Zhang Z, Gygi MP, Krainer AR, et al. (2007) SR proteins function in coupling RNAP II transcription to pre-mRNA splicing. Mol Cell 26: 867-881.
-
(2007)
Mol Cell
, vol.26
, pp. 867-881
-
-
Das, R.1
Yu, J.2
Zhang, Z.3
Gygi, M.P.4
Krainer, A.R.5
-
56
-
-
33845654265
-
Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing
-
Moore MJ, Schwartzfarb EM, Silver PA, Yu MC, (2006) Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing. Mol Cell 24: 903-915.
-
(2006)
Mol Cell
, vol.24
, pp. 903-915
-
-
Moore, M.J.1
Schwartzfarb, E.M.2
Silver, P.A.3
Yu, M.C.4
-
57
-
-
84869054771
-
Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1
-
Manavella PA, Hagmann J, Ott F, Laubinger S, Franz M, et al. (2012) Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell 151: 859-870.
-
(2012)
Cell
, vol.151
, pp. 859-870
-
-
Manavella, P.A.1
Hagmann, J.2
Ott, F.3
Laubinger, S.4
Franz, M.5
-
58
-
-
77956093433
-
A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis
-
Hou X, Li L, Peng Z, Wei B, Tang S, et al. (2010) A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis. Plant J 63: 880-888.
-
(2010)
Plant J
, vol.63
, pp. 880-888
-
-
Hou, X.1
Li, L.2
Peng, Z.3
Wei, B.4
Tang, S.5
-
59
-
-
0142245636
-
A gateway cloning vector set for high-throughput functional analysis of genes in planta
-
Curtis MD, Grossniklaus U, (2003) A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol 133: 462-469.
-
(2003)
Plant Physiol
, vol.133
, pp. 462-469
-
-
Curtis, M.D.1
Grossniklaus, U.2
-
60
-
-
21444454906
-
A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis
-
Gong Z, Dong CH, Lee H, Zhu J, Xiong L, et al. (2005) A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17: 256-267.
-
(2005)
Plant Cell
, vol.17
, pp. 256-267
-
-
Gong, Z.1
Dong, C.H.2
Lee, H.3
Zhu, J.4
Xiong, L.5
-
61
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
62
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
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