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Volumn 22, Issue 22, 2006, Pages 2711-2714

DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; PROTEIN ARGONAUTE; PROTEIN DICER; RIBONUCLEASE; UNCLASSIFIED DRUG;

EID: 33750990797     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl468     Document Type: Article
Times cited : (58)

References (39)
  • 1
    • 9144257886 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman,A. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
    • (2004) Nucleic Acids Res. , vol.32
    • Bateman, A.1
  • 2
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein,E. et al. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409, 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1
  • 3
    • 0042511005 scopus 로고    scopus 로고
    • A graph-theory algorithm for rapid protein side-chain prediction
    • Canutescu,A.A. et al. (2003) A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci., 12, 2001-2014.
    • (2003) Protein Sci. , vol.12 , pp. 2001-2014
    • Canutescu, A.A.1
  • 4
    • 23644433363 scopus 로고    scopus 로고
    • TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
    • Chendrimada,T.P. et al. (2005) TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature, 436, 740-744.
    • (2005) Nature , vol.436 , pp. 740-744
    • Chendrimada, T.P.1
  • 5
    • 26944497194 scopus 로고    scopus 로고
    • Structural domains in RNAi
    • Collins,R.E. and Cheng,X. (2005) Structural domains in RNAi. FEBS Lett., 579, 5841-5849.
    • (2005) FEBS Lett. , vol.579 , pp. 5841-5849
    • Collins, R.E.1    Cheng, X.2
  • 6
    • 0036966283 scopus 로고    scopus 로고
    • New and old roles of the double-stranded RNA-binding domain
    • Doyle,M. and Jantsch,M.F. (2002) New and old roles of the double-stranded RNA-binding domain. J. Struct. Biol., 140, 147-153.
    • (2002) J. Struct. Biol. , vol.140 , pp. 147-153
    • Doyle, M.1    Jantsch, M.F.2
  • 7
    • 0035150231 scopus 로고    scopus 로고
    • The human but not the Xenopus RNA-editing enzyme ADAR1 has an atypical nuclear localization signal and displays the characteristics of a shuttling protein
    • Eckmann,C.R. et al. (2001) The human but not the Xenopus RNA-editing enzyme ADAR1 has an atypical nuclear localization signal and displays the characteristics of a shuttling protein. Mol. Biol. Cell, 12, 1911-1924.
    • (2001) Mol. Biol. Cell , vol.12 , pp. 1911-1924
    • Eckmann, C.R.1
  • 8
    • 2942544229 scopus 로고    scopus 로고
    • COACH: Profile-profile alignment of protein families using hidden Markov models
    • Edgar,R.C. and Sjolander,K. (2004) COACH: Profile-profile alignment of protein families using hidden Markov models. Bioinformatics, 20, 1309-1318.
    • (2004) Bioinformatics , vol.20 , pp. 1309-1318
    • Edgar, R.C.1    Sjolander, K.2
  • 9
    • 0043123167 scopus 로고    scopus 로고
    • Tools for comparative protein structure modeling and analysis
    • Eswar,N. et al. (2003) Tools for comparative protein structure modeling and analysis. Nucleic Acids Res., 31, 3375-3380.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3375-3380
    • Eswar, N.1
  • 10
    • 22744433240 scopus 로고    scopus 로고
    • Normal microRNA maturation and germ-line stem cell maintenance requires loquacious, a double-stranded RNA-binding domain protein
    • Forstemann,K. et al. (2005) Normal microRNA maturation and germ-line stem cell maintenance requires loquacious, a double-stranded RNA-binding domain protein. PLoS Biol., 3, e236.
    • (2005) PLoS Biol. , vol.3
    • Forstemann, K.1
  • 11
    • 31044448524 scopus 로고    scopus 로고
    • Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
    • Gan,J. et al. (2006) Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III. Cell, 124, 355-366.
    • (2006) Cell , vol.124 , pp. 355-366
    • Gan, J.1
  • 12
    • 0038386050 scopus 로고    scopus 로고
    • 3D-Jury: A simple approach to improve protein structure predictions
    • Ginalski,K. et al. (2003) 3D-Jury: A simple approach to improve protein structure predictions. Bioinformatics, 19, 1015-1018.
    • (2003) Bioinformatics , vol.19 , pp. 1015-1018
    • Ginalski, K.1
  • 13
    • 27144550559 scopus 로고    scopus 로고
    • TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing
    • Haase,A.D. et al. (2005) TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. EMBO Rep., 6, 961-967.
    • (2005) EMBO Rep. , vol.6 , pp. 961-967
    • Haase, A.D.1
  • 14
    • 26944441255 scopus 로고    scopus 로고
    • Dicing and slicing: The core machinery of the RNA interference pathway
    • Hammond,S.M. (2005) Dicing and slicing: The core machinery of the RNA interference pathway. FEBS Lett., 579, 5822-5829.
    • (2005) FEBS Lett. , vol.579 , pp. 5822-5829
    • Hammond, S.M.1
  • 15
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • Hammond,S.M. et al. (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi. Science, 293, 1146-1150.
    • (2001) Science , vol.293 , pp. 1146-1150
    • Hammond, S.M.1
  • 16
    • 4444248655 scopus 로고    scopus 로고
    • Oligomerization activity of a double-stranded RNA-binding domain
    • Hitti,E.G. et al. (2004) Oligomerization activity of a double-stranded RNA-binding domain. FEBS Lett., 574, 25-30.
    • (2004) FEBS Lett. , vol.574 , pp. 25-30
    • Hitti, E.G.1
  • 17
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones,D.T. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292, 195-202.
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 18
    • 30344452280 scopus 로고    scopus 로고
    • SAM-T04: What is new in protein-structure prediction for CASP6
    • Karplus,K. et al. (2005) SAM-T04: What is new in protein-structure prediction for CASP6. Proteins, 61 (Suppl. 7), 135-142.
    • (2005) Proteins , vol.61 , Issue.SUPPL. 7 , pp. 135-142
    • Karplus, K.1
  • 19
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova,A. et al. (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell, 115, 209-216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1
  • 20
    • 23144448512 scopus 로고    scopus 로고
    • ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
    • Landau,M. et al. (2005) ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res., 33, W299-W302.
    • (2005) Nucleic Acids Res. , vol.33
    • Landau, M.1
  • 21
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee,Y.S. et al. (2004) Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell, 117, 69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1
  • 22
    • 2542461104 scopus 로고    scopus 로고
    • Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain
    • Lingel,A. et al. (2004) Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain. Nat. Struct. Mol. Biol., 11, 576-577.
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 576-577
    • Lingel, A.1
  • 23
    • 0026610767 scopus 로고
    • Assessment of protein models with three-dimensional profiles
    • Luthy,R. et al. (1992) Assessment of protein models with three-dimensional profiles. Nature, 356, 83-85.
    • (1992) Nature , vol.356 , pp. 83-85
    • Luthy, R.1
  • 24
    • 2442679207 scopus 로고    scopus 로고
    • Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain
    • Ma,J.B. et al. (2004) Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature, 429, 318-322.
    • (2004) Nature , vol.429 , pp. 318-322
    • Ma, J.B.1
  • 25
    • 30844438338 scopus 로고    scopus 로고
    • Structural basis for double-stranded RNA processing by Dicer
    • MacRae,I.J. et al. (2006) Structural basis for double-stranded RNA processing by Dicer. Science, 311, 195-198.
    • (2006) Science , vol.311 , pp. 195-198
    • MacRae, I.J.1
  • 26
    • 29144526714 scopus 로고    scopus 로고
    • Protein structure prediction: Nnroads to biology
    • Petrey,D. and Honig,B. (2005) Protein structure prediction: Inroads to biology. Mol. Cell, 20, 811-819.
    • (2005) Mol. Cell , vol.20 , pp. 811-819
    • Petrey, D.1    Honig, B.2
  • 27
    • 1842766252 scopus 로고    scopus 로고
    • A Dicer-2-dependent 80S complex cleaves targeted mRNAs during RNAi in Drosophila
    • Pham,J.W. et al. (2004) A Dicer-2-dependent 80S complex cleaves targeted mRNAs during RNAi in Drosophila. Cell, 117, 83-94.
    • (2004) Cell , vol.117 , pp. 83-94
    • Pham, J.W.1
  • 28
    • 0032535613 scopus 로고    scopus 로고
    • Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA
    • Ryter,J.M. and Schultz,S.C. (1998) Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA. EMBO J., 17, 7505-7513.
    • (1998) EMBO J. , vol.17 , pp. 7505-7513
    • Ryter, J.M.1    Schultz, S.C.2
  • 29
    • 0032506030 scopus 로고    scopus 로고
    • Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
    • Sanchez,R. and Sali,A. (1998) Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc. Natl Acad. Sci. USA, 95, 13597-13602.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 13597-13602
    • Sanchez, R.1    Sali, A.2
  • 30
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • Schwarz,D.S. et al. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell, 115, 199-208.
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1
  • 31
    • 0027490731 scopus 로고
    • Recognition of errors in three-dimensional structures of proteins
    • Sippl,M.J. (1993) Recognition of errors in three-dimensional structures of proteins. Proteins, 17, 355-362.
    • (1993) Proteins , vol.17 , pp. 355-362
    • Sippl, M.J.1
  • 32
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • Soding,J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics, 21, 951-960.
    • (2005) Bioinformatics , vol.21 , pp. 951-960
    • Soding, J.1
  • 33
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • Soding,J. et al. (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res., 33, W244-248.
    • (2005) Nucleic Acids Res. , vol.33
    • Soding, J.1
  • 34
    • 13444287967 scopus 로고    scopus 로고
    • Assembly and function of RNA silencing complexes
    • Sontheimer,E.J. (2005) Assembly and function of RNA silencing complexes. Nat. Rev. Mol. Cell Biol., 6, 127-138.
    • (2005) Nat. Rev. Mol. Cell Biol. , vol.6 , pp. 127-138
    • Sontheimer, E.J.1
  • 35
    • 0037188904 scopus 로고    scopus 로고
    • The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans
    • Tabara,H. et al. (2002) The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell, 109, 861-871.
    • (2002) Cell , vol.109 , pp. 861-871
    • Tabara, H.1
  • 36
    • 14644393684 scopus 로고    scopus 로고
    • Perspective: Machines for RNAi
    • Tomari,Y. and Zamore,P.D. (2005) Perspective: Machines for RNAi. Genes Dev., 19, 517-529.
    • (2005) Genes Dev. , vol.19 , pp. 517-529
    • Tomari, Y.1    Zamore, P.D.2
  • 37
    • 8844271740 scopus 로고    scopus 로고
    • A protein sensor for siRNA asymmetry
    • Tomari,Y. et al. (2004) A protein sensor for siRNA asymmetry. Science, 306, 1377-1380.
    • (2004) Science , vol.306 , pp. 1377-1380
    • Tomari, Y.1
  • 38
    • 0037406141 scopus 로고    scopus 로고
    • Can correct protein models be identified?
    • Wallner,B. and Elofsson,A. (2003) Can correct protein models be identified? Protein Sci., 12, 1073-1086.
    • (2003) Protein Sci. , vol.12 , pp. 1073-1086
    • Wallner, B.1    Elofsson, A.2
  • 39
    • 3142613181 scopus 로고    scopus 로고
    • Single processing center models for human Dicer and bacterial RNase III
    • Zhang,H. et al. (2004) Single processing center models for human Dicer and bacterial RNase III. Cell, 118, 57-68.
    • (2004) Cell , vol.118 , pp. 57-68
    • Zhang, H.1


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