-
1
-
-
0005820503
-
Depletion of yeast RNase III blocks correct U2 3' end formation and results in polyadenylated but functional U2 snRNA
-
Abou Elela S., Ares M. Depletion of yeast RNase III blocks correct U2 3' end formation and results in polyadenylated but functional U2 snRNA. EMBO J. 1998, 17:3738-3746.
-
(1998)
EMBO J.
, vol.17
, pp. 3738-3746
-
-
Abou Elela, S.1
Ares, M.2
-
2
-
-
37849016860
-
Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast
-
Catala M., Tremblay M., Samson E., Conconi A., Abou Elela S. Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast. Mol. Cell. Biol. 2008, 28:619-629.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 619-629
-
-
Catala, M.1
Tremblay, M.2
Samson, E.3
Conconi, A.4
Abou Elela, S.5
-
3
-
-
0032509095
-
Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism
-
Chanfreau G., Legrain P., Jacquier A. Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism. J.Mol. Biol. 1998, 284:975-988.
-
(1998)
J.Mol. Biol.
, vol.284
, pp. 975-988
-
-
Chanfreau, G.1
Legrain, P.2
Jacquier, A.3
-
4
-
-
0034724279
-
Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III
-
Chanfreau G., Buckle M., Jacquier A. Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III. Proc. Natl. Acad. Sci. USA 2000, 97:3142-3147.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 3142-3147
-
-
Chanfreau, G.1
Buckle, M.2
Jacquier, A.3
-
5
-
-
34250257369
-
RNA processing and degradation by RNase III
-
Academic Press, New York, J.G. Belasco, G. Brawerman (Eds.)
-
Court D.L. RNA processing and degradation by RNase III. Control of Messenger RNA Stability 1993, 71-116. Academic Press, New York. J.G. Belasco, G. Brawerman (Eds.).
-
(1993)
Control of Messenger RNA Stability
, pp. 71-116
-
-
Court, D.L.1
-
6
-
-
84888626757
-
RNase III: Genetics and function; structure and mechanism
-
Court D.L., Gan J., Liang Y.-H., Shaw G.X., Tropea J.E., Costantino N., Waugh D.S., Ji X. RNase III: Genetics and function; structure and mechanism. Annu. Rev. Genet. 2013, 47:405-431.
-
(2013)
Annu. Rev. Genet.
, vol.47
, pp. 405-431
-
-
Court, D.L.1
Gan, J.2
Liang, Y.-H.3
Shaw, G.X.4
Tropea, J.E.5
Costantino, N.6
Waugh, D.S.7
Ji, X.8
-
7
-
-
0038054468
-
RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns
-
Danin-Kreiselman M., Lee C.Y., Chanfreau G. RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns. Mol. Cell 2003, 11:1279-1289.
-
(2003)
Mol. Cell
, vol.11
, pp. 1279-1289
-
-
Danin-Kreiselman, M.1
Lee, C.Y.2
Chanfreau, G.3
-
8
-
-
40649086065
-
Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage
-
Du Z., Lee J.K., Tjhen R., Stroud R.M., James T.L. Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage. Proc. Natl. Acad. Sci. USA 2008, 105:2391-2396.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 2391-2396
-
-
Du, Z.1
Lee, J.K.2
Tjhen, R.3
Stroud, R.M.4
James, T.L.5
-
9
-
-
0029919935
-
RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site
-
Elela S.A., Igel H., Ares M. RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site. Cell 1996, 85:115-124.
-
(1996)
Cell
, vol.85
, pp. 115-124
-
-
Elela, S.A.1
Igel, H.2
Ares, M.3
-
10
-
-
26444436343
-
Intermediate states of ribonuclease III in complex with double-stranded RNA
-
Gan J., Tropea J.E., Austin B.P., Court D.L., Waugh D.S., Ji X. Intermediate states of ribonuclease III in complex with double-stranded RNA. Structure 2005, 13:1435-1442.
-
(2005)
Structure
, vol.13
, pp. 1435-1442
-
-
Gan, J.1
Tropea, J.E.2
Austin, B.P.3
Court, D.L.4
Waugh, D.S.5
Ji, X.6
-
11
-
-
31044448524
-
Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
-
Gan J., Tropea J.E., Austin B.P., Court D.L., Waugh D.S., Ji X. Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III. Cell 2006, 124:355-366.
-
(2006)
Cell
, vol.124
, pp. 355-366
-
-
Gan, J.1
Tropea, J.E.2
Austin, B.P.3
Court, D.L.4
Waugh, D.S.5
Ji, X.6
-
12
-
-
36849013062
-
A stepwise model for double-stranded RNA processing by ribonuclease III
-
Gan J., Shaw G., Tropea J.E., Waugh D.S., Court D.L., Ji X. A stepwise model for double-stranded RNA processing by ribonuclease III. Mol. Microbiol. 2008, 67:143-154.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 143-154
-
-
Gan, J.1
Shaw, G.2
Tropea, J.E.3
Waugh, D.S.4
Court, D.L.5
Ji, X.6
-
13
-
-
33749135948
-
Characterization of the reactivity determinants of a novel hairpin substrate of yeast RNase III
-
Ghazal G., Elela S.A. Characterization of the reactivity determinants of a novel hairpin substrate of yeast RNase III. J.Mol. Biol. 2006, 363:332-344.
-
(2006)
J.Mol. Biol.
, vol.363
, pp. 332-344
-
-
Ghazal, G.1
Elela, S.A.2
-
14
-
-
84869037267
-
The loop position of shRNAs and pre-miRNAs is critical for the accuracy of Dicer processing invivo
-
Gu S., Jin L., Zhang Y., Huang Y., Zhang F., Valdmanis P.N., Kay M.A. The loop position of shRNAs and pre-miRNAs is critical for the accuracy of Dicer processing invivo. Cell 2012, 151:900-911.
-
(2012)
Cell
, vol.151
, pp. 900-911
-
-
Gu, S.1
Jin, L.2
Zhang, Y.3
Huang, Y.4
Zhang, F.5
Valdmanis, P.N.6
Kay, M.A.7
-
15
-
-
84872873185
-
Intrinsic dynamics of an extended hydrophobic core in the S.cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites
-
Hartman E., Wang Z., Zhang Q., Roy K., Chanfreau G., Feigon J. Intrinsic dynamics of an extended hydrophobic core in the S.cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites. J.Mol. Biol. 2013, 425:546-562.
-
(2013)
J.Mol. Biol.
, vol.425
, pp. 546-562
-
-
Hartman, E.1
Wang, Z.2
Zhang, Q.3
Roy, K.4
Chanfreau, G.5
Feigon, J.6
-
18
-
-
36849088754
-
Short RNA guides cleavage by eukaryotic RNase III
-
Lamontagne B., Abou Elela S. Short RNA guides cleavage by eukaryotic RNase III. PLoS ONE 2007, 2:e472.
-
(2007)
PLoS ONE
, vol.2
-
-
Lamontagne, B.1
Abou Elela, S.2
-
19
-
-
0034804434
-
Purification and characterization of Saccharomyces cerevisiae Rnt1p nuclease
-
Lamontagne B., Elela S.A. Purification and characterization of Saccharomyces cerevisiae Rnt1p nuclease. Methods Enzymol. 2001, 342:159-167.
-
(2001)
Methods Enzymol.
, vol.342
, pp. 159-167
-
-
Lamontagne, B.1
Elela, S.A.2
-
20
-
-
0347717809
-
Evaluation of the RNA determinants for bacterial and yeast RNase III binding and cleavage
-
Lamontagne B., Elela S.A. Evaluation of the RNA determinants for bacterial and yeast RNase III binding and cleavage. J.Biol. Chem. 2004, 279:2231-2241.
-
(2004)
J.Biol. Chem.
, vol.279
, pp. 2231-2241
-
-
Lamontagne, B.1
Elela, S.A.2
-
21
-
-
0033979399
-
The N-terminal domain that distinguishes yeast from bacterial RNase III contains a dimerization signal required for efficient double-stranded RNA cleavage
-
Lamontagne B., Tremblay A., Abou Elela S. The N-terminal domain that distinguishes yeast from bacterial RNase III contains a dimerization signal required for efficient double-stranded RNA cleavage. Mol. Cell. Biol. 2000, 20:1104-1115.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 1104-1115
-
-
Lamontagne, B.1
Tremblay, A.2
Abou Elela, S.3
-
22
-
-
0035155389
-
The RNase III family: a conserved structure and expanding functions in eukaryotic dsRNA metabolism
-
Lamontagne B., Larose S., Boulanger J., Elela S.A. The RNase III family: a conserved structure and expanding functions in eukaryotic dsRNA metabolism. Curr. Issues Mol. Biol. 2001, 3:71-78.
-
(2001)
Curr. Issues Mol. Biol.
, vol.3
, pp. 71-78
-
-
Lamontagne, B.1
Larose, S.2
Boulanger, J.3
Elela, S.A.4
-
23
-
-
0037432527
-
Sequence dependence of substrate recognition and cleavage by yeast RNase III
-
Lamontagne B., Ghazal G., Lebars I., Yoshizawa S., Fourmy D., Elela S.A. Sequence dependence of substrate recognition and cleavage by yeast RNase III. J.Mol. Biol. 2003, 327:985-1000.
-
(2003)
J.Mol. Biol.
, vol.327
, pp. 985-1000
-
-
Lamontagne, B.1
Ghazal, G.2
Lebars, I.3
Yoshizawa, S.4
Fourmy, D.5
Elela, S.A.6
-
24
-
-
1842609455
-
Molecular requirements for duplex recognition and cleavage by eukaryotic RNase III: discovery of an RNA-dependent DNA cleavage activity of yeast Rnt1p
-
Lamontagne B., Hannoush R.N., Damha M.J., Abou Elela S. Molecular requirements for duplex recognition and cleavage by eukaryotic RNase III: discovery of an RNA-dependent DNA cleavage activity of yeast Rnt1p. J.Mol. Biol. 2004, 338:401-418.
-
(2004)
J.Mol. Biol.
, vol.338
, pp. 401-418
-
-
Lamontagne, B.1
Hannoush, R.N.2
Damha, M.J.3
Abou Elela, S.4
-
25
-
-
49749141418
-
Yeast ribonuclease III uses a network of multiple hydrogen bonds for RNA binding and cleavage
-
Lavoie M., Abou Elela S. Yeast ribonuclease III uses a network of multiple hydrogen bonds for RNA binding and cleavage. Biochemistry 2008, 47:8514-8526.
-
(2008)
Biochemistry
, vol.47
, pp. 8514-8526
-
-
Lavoie, M.1
Abou Elela, S.2
-
26
-
-
0037126621
-
Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing
-
Lebars I., Lamontagne B., Yoshizawa S., Aboul-Elela S., Fourmy D. Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. EMBO J. 2001, 20:7250-7258.
-
(2001)
EMBO J.
, vol.20
, pp. 7250-7258
-
-
Lebars, I.1
Lamontagne, B.2
Yoshizawa, S.3
Aboul-Elela, S.4
Fourmy, D.5
-
27
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y., Ahn C., Han J., Choi H., Kim J., Yim J., Lee J., Provost P., Rådmark O., Kim S., Kim V.N. The nuclear RNase III Drosha initiates microRNA processing. Nature 2003, 425:415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Rådmark, O.9
Kim, S.10
Kim, V.N.11
-
28
-
-
75149146546
-
Endoribonucleases-enzymes gaining spotlight in mRNA metabolism
-
Li W.M., Barnes T., Lee C.H. Endoribonucleases-enzymes gaining spotlight in mRNA metabolism. FEBS J. 2010, 277:627-641.
-
(2010)
FEBS J.
, vol.277
, pp. 627-641
-
-
Li, W.M.1
Barnes, T.2
Lee, C.H.3
-
29
-
-
0030670627
-
RNA-protein interactions of an archaeal homotetrameric splicing endoribonuclease with an exceptional evolutionary history
-
Lykke-Andersen J., Garrett R.A. RNA-protein interactions of an archaeal homotetrameric splicing endoribonuclease with an exceptional evolutionary history. EMBO J. 1997, 16:6290-6300.
-
(1997)
EMBO J.
, vol.16
, pp. 6290-6300
-
-
Lykke-Andersen, J.1
Garrett, R.A.2
-
30
-
-
33846927800
-
Ribonuclease revisited: structural insights into ribonuclease III family enzymes
-
MacRae I.J., Doudna J.A. Ribonuclease revisited: structural insights into ribonuclease III family enzymes. Curr. Opin. Struct. Biol. 2007, 17:138-145.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 138-145
-
-
MacRae, I.J.1
Doudna, J.A.2
-
31
-
-
30844438338
-
Structural basis for double-stranded RNA processing by Dicer
-
Macrae I.J., Zhou K., Li F., Repic A., Brooks A.N., Cande W.Z., Adams P.D., Doudna J.A. Structural basis for double-stranded RNA processing by Dicer. Science 2006, 311:195-198.
-
(2006)
Science
, vol.311
, pp. 195-198
-
-
Macrae, I.J.1
Zhou, K.2
Li, F.3
Repic, A.4
Brooks, A.N.5
Cande, W.Z.6
Adams, P.D.7
Doudna, J.A.8
-
32
-
-
80755182466
-
Reporter mRNAs cleaved by Rnt1p are exported and degraded in the cytoplasm
-
Meaux S., Lavoie M., Gagnon J., Abou Elela S., van Hoof A. Reporter mRNAs cleaved by Rnt1p are exported and degraded in the cytoplasm. Nucleic Acids Res. 2011, 39:9357-9367.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 9357-9367
-
-
Meaux, S.1
Lavoie, M.2
Gagnon, J.3
Abou Elela, S.4
van Hoof, A.5
-
33
-
-
0033868624
-
Substrate recognition by a eukaryotic RNase III: the double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5'-AGNN-3' tetraloop
-
Nagel R., Ares M. Substrate recognition by a eukaryotic RNase III: the double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5'-AGNN-3' tetraloop. RNA 2000, 6:1142-1156.
-
(2000)
RNA
, vol.6
, pp. 1142-1156
-
-
Nagel, R.1
Ares, M.2
-
34
-
-
0032932638
-
Function, mechanism and regulation of bacterial ribonucleases
-
Nicholson A.W. Function, mechanism and regulation of bacterial ribonucleases. FEMS Microbiol. Rev. 1999, 23:371-390.
-
(1999)
FEMS Microbiol. Rev.
, vol.23
, pp. 371-390
-
-
Nicholson, A.W.1
-
35
-
-
0347224335
-
The ribonuclease superfamily: forms and functions in RNA maturation, decay, and gene silencing
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, G.J. Hannon (Ed.)
-
Nicholson A.W. The ribonuclease superfamily: forms and functions in RNA maturation, decay, and gene silencing. RNAi: A Guide to Gene Silencing 2003, 149-174. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. G.J. Hannon (Ed.).
-
(2003)
RNAi: A Guide to Gene Silencing
, pp. 149-174
-
-
Nicholson, A.W.1
-
36
-
-
84889676816
-
Ribonuclease III and the role of double-stranded RNA processing in bacterial systems
-
Spinger, Berline-Heidelberg, A.W. Nicholson (Ed.)
-
Nicholson A.W. Ribonuclease III and the role of double-stranded RNA processing in bacterial systems. Ribonucleases 2011, 269-297. Spinger, Berline-Heidelberg. A.W. Nicholson (Ed.).
-
(2011)
Ribonucleases
, pp. 269-297
-
-
Nicholson, A.W.1
-
37
-
-
0027362363
-
Posttranscriptional control of the lysogenic pathway in bacteriophage lambda
-
Oppenheim A.B., Kornitzer D., Altuvia S., Court D.L. Posttranscriptional control of the lysogenic pathway in bacteriophage lambda. Prog. Nucleic Acid Res. Mol. Biol. 1993, 46:37-49.
-
(1993)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.46
, pp. 37-49
-
-
Oppenheim, A.B.1
Kornitzer, D.2
Altuvia, S.3
Court, D.L.4
-
38
-
-
0342723737
-
RNA recognition by a Staufen double-stranded RNA-binding domain
-
Ramos A., Grünert S., Adams J., Micklem D.R., Proctor M.R., Freund S., Bycroft M., St Johnston D., Varani G. RNA recognition by a Staufen double-stranded RNA-binding domain. EMBO J. 2000, 19:997-1009.
-
(2000)
EMBO J.
, vol.19
, pp. 997-1009
-
-
Ramos, A.1
Grünert, S.2
Adams, J.3
Micklem, D.R.4
Proctor, M.R.5
Freund, S.6
Bycroft, M.7
St Johnston, D.8
Varani, G.9
-
39
-
-
43449118061
-
Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B. subtilis
-
Redko Y., Bechhofer D.H., Condon C. Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B. subtilis. Mol. Microbiol. 2008, 68:1096-1106.
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 1096-1106
-
-
Redko, Y.1
Bechhofer, D.H.2
Condon, C.3
-
40
-
-
0014408286
-
Purification and properties of ribonuclease III from Escherichia coli
-
Robertson H.D., Webster R.E., Zinder N.D. Purification and properties of ribonuclease III from Escherichia coli. J.Biol. Chem. 1968, 243:82-91.
-
(1968)
J.Biol. Chem.
, vol.243
, pp. 82-91
-
-
Robertson, H.D.1
Webster, R.E.2
Zinder, N.D.3
-
41
-
-
0035846580
-
Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain
-
Sun W., Jun E., Nicholson A.W. Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain. Biochemistry 2001, 40:14976-14984.
-
(2001)
Biochemistry
, vol.40
, pp. 14976-14984
-
-
Sun, W.1
Jun, E.2
Nicholson, A.W.3
-
42
-
-
35348983404
-
Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human Dicer
-
Takeshita D., Zenno S., Lee W.C., Nagata K., Saigo K., Tanokura M. Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human Dicer. J.Mol. Biol. 2007, 374:106-120.
-
(2007)
J.Mol. Biol.
, vol.374
, pp. 106-120
-
-
Takeshita, D.1
Zenno, S.2
Lee, W.C.3
Nagata, K.4
Saigo, K.5
Tanokura, M.6
-
43
-
-
79960173334
-
Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs
-
Wang Z., Hartman E., Roy K., Chanfreau G., Feigon J. Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs. Structure 2011, 19:999-1010.
-
(2011)
Structure
, vol.19
, pp. 999-1010
-
-
Wang, Z.1
Hartman, E.2
Roy, K.3
Chanfreau, G.4
Feigon, J.5
-
44
-
-
79960186717
-
The inside-out mechanism of Dicers from budding yeasts
-
Weinberg D.E., Nakanishi K., Patel D.J., Bartel D.P. The inside-out mechanism of Dicers from budding yeasts. Cell 2011, 146:262-276.
-
(2011)
Cell
, vol.146
, pp. 262-276
-
-
Weinberg, D.E.1
Nakanishi, K.2
Patel, D.J.3
Bartel, D.P.4
-
45
-
-
3042704491
-
Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III
-
Wu H., Henras A., Chanfreau G., Feigon J. Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. Proc. Natl. Acad. Sci. USA 2004, 101:8307-8312.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8307-8312
-
-
Wu, H.1
Henras, A.2
Chanfreau, G.3
Feigon, J.4
-
46
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang H., Kolb F.A., Brondani V., Billy E., Filipowicz W. Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J. 2002, 21:5875-5885.
-
(2002)
EMBO J.
, vol.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
-
47
-
-
3142613181
-
Single processing center models for human Dicer and bacterial RNase III
-
Zhang H., Kolb F.A., Jaskiewicz L., Westhof E., Filipowicz W. Single processing center models for human Dicer and bacterial RNase III. Cell 2004, 118:57-68.
-
(2004)
Cell
, vol.118
, pp. 57-68
-
-
Zhang, H.1
Kolb, F.A.2
Jaskiewicz, L.3
Westhof, E.4
Filipowicz, W.5
|