-
2
-
-
26944450901
-
RNAi mechanisms in C. Elegans
-
Grishok, A. (2005) RNAi mechanisms in C. elegans. FEBS Lett. 579, 5932-5939
-
(2005)
FEBS Lett
, vol.579
, pp. 5932-5939
-
-
Grishok, A.1
-
3
-
-
0032717319
-
The rde-1 gene, RNA interference, and transposon silencing in C. Elegans
-
Tabara, H., Sarkissian, M., Kelly, W. G., Fleenor, J., Grishok, A., Timmons, L., Fire, A. and Mello, C. C. (1999) The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 99, 123-132
-
(1999)
Cell
, vol.99
, pp. 123-132
-
-
Tabara, H.1
Sarkissian, M.2
Kelly, W.G.3
Fleenor, J.4
Grishok, A.5
Timmons, L.6
Fire, A.7
Mello, C.C.8
-
4
-
-
0034757613
-
Distinct roles for RDE-1 and RDE-4 during RNA interference in C. Elegans
-
Parrish, S. and Fire, A. (2001) Distinct roles for RDE-1 and RDE-4 during RNA interference in C. elegans. RNA 7, 1397-1402
-
(2001)
RNA
, vol.7
, pp. 1397-1402
-
-
Parrish, S.1
Fire, A.2
-
5
-
-
0037188904
-
The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. Elegans
-
Tabara, H., Yigit, E., Siomi, H. and Mello, C. C. (2002) The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell 109, 861-871
-
(2002)
Cell
, vol.109
, pp. 861-871
-
-
Tabara, H.1
Yigit, E.2
Siomi, H.3
Mello, C.C.4
-
6
-
-
58149194597
-
In C. Elegans, high levels of dsRNA allow RNAi in the absence of RDE-4
-
Habig, J. W., Aruscavage, P. J. and Bass, B. L. (2008) In C. elegans, high levels of dsRNA allow RNAi in the absence of RDE-4. PLoS ONE 3, e4052
-
(2008)
PLoS ONE
, vol.3
-
-
Habig, J.W.1
Aruscavage, P.J.2
Bass, B.L.3
-
7
-
-
33646186518
-
RDE-4 preferentially binds long dsRNA and its dimerization is necessary for cleavage of dsRNA to siRNA
-
Parker, G. S., Eckert, D. M. and Bass, B. L. (2006) RDE-4 preferentially binds long dsRNA and its dimerization is necessary for cleavage of dsRNA to siRNA. RNA 12, 807-818
-
(2006)
RNA
, vol.12
, pp. 807-818
-
-
Parker, G.S.1
Eckert, D.M.2
Bass, B.L.3
-
8
-
-
56249098241
-
DsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi
-
Parker, G. S., Maity, T. S. and Bass, B. L. (2008) dsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi. J. Mol. Biol. 384, 967-979
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 967-979
-
-
Parker, G.S.1
Maity, T.S.2
Bass, B.L.3
-
9
-
-
79956081671
-
On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. Elegans
-
Blanchard, D., Parameswaran, P., Lopez-Molina, J., Gent, J., Saynuk, J. F. and Fire, A. (2011) On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans. RNA Biol. 8, 458-467
-
(2011)
RNA Biol
, vol.8
, pp. 458-467
-
-
Blanchard, D.1
Parameswaran, P.2
Lopez-Molina, J.3
Gent, J.4
Saynuk, J.F.5
Fire, A.6
-
10
-
-
84858077472
-
The Pfam protein families database
-
Punta, M., Coggill, P. C., Eberhardt, R. Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J. et al. (2012) The Pfam protein families database. Nucleic Acids Res. 40, D290-D301
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
-
11
-
-
78650763143
-
Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein
-
Yamashita, S., Nagata, T., Kawazoe, M., Takemoto, C., Kigawa, T., Guntert, P., Kobayashi, N., Terada, T., Shirouzu, M., Wakiyama, M. et al. (2011) Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein. Protein Sci. 20, 118-130
-
(2011)
Protein Sci.
, vol.20
, pp. 118-130
-
-
Yamashita, S.1
Nagata, T.2
Kawazoe, M.3
Takemoto, C.4
Kigawa, T.5
Guntert, P.6
Kobayashi, N.7
Terada, T.8
Shirouzu, M.9
Wakiyama, M.10
-
12
-
-
77957082650
-
Structure and RNA interactions of the plant microRNA processing- associated protein HYL1
-
Rasia, R. M., Mateos, J., Bologna, N. G., Burdisso, P., Imbert, L., Palatnik, J. F. and Boisbouvier, J. (2010) Structure and RNA interactions of the plant microRNA processing-associated protein HYL1. Biochemistry 49, 8237-8239
-
(2010)
Biochemistry
, vol.49
, pp. 8237-8239
-
-
Rasia, R.M.1
Mateos, J.2
Bologna, N.G.3
Burdisso, P.4
Imbert, L.5
Palatnik, J.F.6
Boisbouvier, J.7
-
13
-
-
0032530310
-
Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation
-
Nanduri, S., Carpick, B. W., Yang, Y., Williams, B. R. and Qin, J. (1998) Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation. EMBO J. 17, 5458-5465
-
(1998)
EMBO J
, vol.17
, pp. 5458-5465
-
-
Nanduri, S.1
Carpick, B.W.2
Yang, Y.3
Williams, B.R.4
Qin, J.5
-
14
-
-
77957822421
-
The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove
-
Stefl, R., Oberstrass, F. C., Hood, J. L., Jourdan, M., Zimmermann, M., Skrisovska, L., Maris, C., Peng, L., Hofr, C., Emeson, R. B. and Allain, F. H. (2010) The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove. Cell 143, 225-237
-
(2010)
Cell
, vol.143
, pp. 225-237
-
-
Stefl, R.1
Oberstrass, F.C.2
Hood, J.L.3
Jourdan, M.4
Zimmermann, M.5
Skrisovska, L.6
Maris, C.7
Peng, L.8
Hofr, C.9
Emeson, R.B.10
Allain, F.H.11
-
15
-
-
34548480185
-
Crystal structure of human DGCR8 core
-
Sohn, S. Y., Bae, W. J., Kim, J. J., Yeom, K. H., Kim, V. N. and Cho, Y. (2007) Crystal structure of human DGCR8 core. Nat. Struct. Mol. Biol. 14, 847-853
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 847-853
-
-
Sohn, S.Y.1
Bae, W.J.2
Kim, J.J.3
Yeom, K.H.4
Kim, V.N.5
Cho, Y.6
-
16
-
-
0342723737
-
RNA recognition by a Staufen double-stranded RNA-binding domain
-
Ramos, A., Grunert, S., Adams, J., Micklem, D. R., Proctor, M. R., Freund, S., Bycroft, M., St Johnston, D. and Varani, G. (2000) RNA recognition by a Staufen double-stranded RNA-binding domain. EMBO J. 19, 997-1009
-
(2000)
EMBO J
, vol.19
, pp. 997-1009
-
-
Ramos, A.1
Grunert, S.2
Adams, J.3
Micklem, D.R.4
Proctor, M.R.5
Freund, S.6
Bycroft, M.7
St Johnston, D.8
Varani, G.9
-
17
-
-
84860614277
-
Solution structures of the double-stranded RNA-binding domains from RNA helicase A
-
Nagata, T., Tsuda, K., Kobayashi, N., Shirouzu, M., Kigawa, T., Guntert, P., Yokoyama, S. and Muto, Y. (2012) Solution structures of the double-stranded RNA-binding domains from RNA helicase A. Proteins 80, 1699-1706
-
(2012)
Proteins
, vol.80
, pp. 1699-1706
-
-
Nagata, T.1
Tsuda, K.2
Kobayashi, N.3
Shirouzu, M.4
Kigawa, T.5
Guntert, P.6
Yokoyama, S.7
Muto, Y.8
-
18
-
-
0032535613
-
Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA
-
Ryter, J. M. and Schultz, S. C. (1998) Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA. EMBO J. 17, 7505-7513
-
(1998)
EMBO J
, vol.17
, pp. 7505-7513
-
-
Ryter, J.M.1
Schultz, S.C.2
-
19
-
-
3042704491
-
Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III
-
Wu, H., Henras, A., Chanfreau, G. and Feigon, J. (2004) Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. Proc. Natl. Acad. Sci. U.S.A. 101, 8307-8312
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8307-8312
-
-
Wu, H.1
Henras, A.2
Chanfreau, G.3
Feigon, J.4
-
20
-
-
84878270899
-
RNA recognition by double-stranded RNA binding domains: A matter of shape and sequence
-
Masliah, G., Barraud, P. and Allain, F. H. (2013) RNA recognition by double-stranded RNA binding domains: A matter of shape and sequence. Cell. Mol. Life Sci. 70, 1875-1895
-
(2013)
Cell. Mol. Life Sci.
, vol.70
, pp. 1875-1895
-
-
Masliah, G.1
Barraud, P.2
Allain, F.H.3
-
21
-
-
84873174284
-
Backbone and sidechain methyl Ile (δ1), Leu and Val chemical shift assignments of RDE-4 (1-243), an RNA interference initiation protein in C. Elegans
-
Chiliveri, S. C., Kumar, S., Marelli, U. K. and Deshmukh, M. V. (2012) Backbone and sidechain methyl Ile (δ1), Leu and Val chemical shift assignments of RDE-4 (1-243), an RNA interference initiation protein in C. elegans. Biomol. NMR Assign. 6, 143-146
-
(2012)
Biomol. NMR Assign.
, vol.6
, pp. 143-146
-
-
Chiliveri, S.C.1
Kumar, S.2
Marelli, U.K.3
Deshmukh, M.V.4
-
22
-
-
0033638111
-
An approach for high-throughput structure determination of proteins by NMR spectroscopy
-
Medek, A., Olejniczak, E. T., Meadows, R. P. and Fesik, S. W. (2000) An approach for high-throughput structure determination of proteins by NMR spectroscopy. J. Biomol. NMR 18, 229-238
-
(2000)
J. Biomol. NMR
, vol.18
, pp. 229-238
-
-
Medek, A.1
Olejniczak, E.T.2
Meadows, R.P.3
Fesik, S.W.4
-
23
-
-
0000045562
-
An enhanced-sensitivity pure absorption gradient 4D 15N, 13C-edited NOESY experiment
-
Muhandiram, D. R., Xu, G. Y. and Kay, L. E. (1993) An enhanced-sensitivity pure absorption gradient 4D 15N, 13C-edited NOESY experiment. J. Biomol. NMR 3, 463-470
-
(1993)
J. Biomol. NMR
, vol.3
, pp. 463-470
-
-
Muhandiram, D.R.1
Xu, G.Y.2
Kay, L.E.3
-
24
-
-
0034625121
-
Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear Overhauser effect data
-
Battiste, J. L. and Wagner, G. (2000) Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear Overhauser effect data. Biochemistry 39, 5355-5365
-
(2000)
Biochemistry
, vol.39
, pp. 5355-5365
-
-
Battiste, J.L.1
Wagner, G.2
-
25
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
Shen, Y., Delaglio, F., Cornilescu, G. and Bax, A. (2009) TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J. Biomol. NMR 44, 213-223
-
(2009)
J. Biomol. NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
26
-
-
0013293280
-
The Xplor-NIH NMR molecular structure determination package
-
Schwieters, C. D., Kuszewski, J. J., Tjandra, N. and Clore, G. M. (2003) The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson. 160, 65-73
-
(2003)
J. Magn. Reson.
, vol.160
, pp. 65-73
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Tjandra, N.3
Clore, G.M.4
-
27
-
-
77149143536
-
Structure of the A. Thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction
-
Qin, H., Chen, F., Huan, X., Machida, S., Song, J. and Yuan, Y. A. (2010) Structure of the A. thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction. RNA 16, 474-481
-
(2010)
RNA
, vol.16
, pp. 474-481
-
-
Qin, H.1
Chen, F.2
Huan, X.3
Machida, S.4
Song, J.5
Yuan, Y.A.6
-
28
-
-
79960186717
-
The inside-out mechanism of Dicers from budding yeasts
-
Weinberg, D. E., Nakanishi, K., Patel, D. J. and Bartel, D. P. (2011) The inside-out mechanism of Dicers from budding yeasts. Cell 146, 262-276
-
(2011)
Cell
, vol.146
, pp. 262-276
-
-
Weinberg, D.E.1
Nakanishi, K.2
Patel, D.J.3
Bartel, D.P.4
|