-
1
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire A, et al. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806-811.
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
-
2
-
-
0037062951
-
RNA interference
-
Hannon GJ (2002) RNA interference. Nature 418:244-251.
-
(2002)
Nature
, vol.418
, pp. 244-251
-
-
Hannon, G.J.1
-
3
-
-
4644242349
-
RNA silencing in plants
-
Baulcombe D (2004) RNA silencing in plants. Nature 431:356-363.
-
(2004)
Nature
, vol.431
, pp. 356-363
-
-
Baulcombe, D.1
-
4
-
-
17844364875
-
Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
-
Grishok A, et al. (2001) Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106:23-34.
-
(2001)
Cell
, vol.106
, pp. 23-34
-
-
Grishok, A.1
-
5
-
-
0037072661
-
Regulation of heterochromatic silencing and histone H3 Lysine-9 methylation by RNAi
-
Volpe TA, et al. (2002) Regulation of heterochromatic silencing and histone H3 Lysine-9 methylation by RNAi. Science 297:1833-1837.
-
(2002)
Science
, vol.297
, pp. 1833-1837
-
-
Volpe, T.A.1
-
6
-
-
0037145031
-
Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena
-
Mochizuki K, Fine N, Fujisawa T, Gorovsky M (2002) Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena. Cell 110:689-699.
-
(2002)
Cell
, vol.110
, pp. 689-699
-
-
Mochizuki, K.1
Fine, N.2
Fujisawa, T.3
Gorovsky, M.4
-
7
-
-
0035863097
-
RNA interference is mediated by 21- and 22-nucleotide RNAs
-
Elbashir SM, Lendeckel W, Tuschl T (2001) RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev 15:188-200.
-
(2001)
Genes Dev
, vol.15
, pp. 188-200
-
-
Elbashir, S.M.1
Lendeckel, W.2
Tuschl, T.3
-
8
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
Hutvagner G, et al. (2001) A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293:834-838.
-
(2001)
Science
, vol.293
, pp. 834-838
-
-
Hutvagner, G.1
-
9
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363-366.
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
10
-
-
0034673638
-
An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells
-
Hammond SM, Bernstein E, Beach D, Hannon GJ (2000) An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells. Nature 404:293-296.
-
(2000)
Nature
, vol.404
, pp. 293-296
-
-
Hammond, S.M.1
Bernstein, E.2
Beach, D.3
Hannon, G.J.4
-
11
-
-
0141868916
-
R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
-
Liu Q, et al. (2003) R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301:1921-1925.
-
(2003)
Science
, vol.301
, pp. 1921-1925
-
-
Liu, Q.1
-
12
-
-
27744590896
-
Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes
-
Matranga C, Tomari Y, Shin C, Bartel D, Zamore P (2005) Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 123:607-620.
-
(2005)
Cell
, vol.123
, pp. 607-620
-
-
Matranga, C.1
Tomari, Y.2
Shin, C.3
Bartel, D.4
Zamore, P.5
-
13
-
-
27744506761
-
Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation
-
Rand T, Petersen S, Du F, Wang X (2005) Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation. Cell 123:621-629.
-
(2005)
Cell
, vol.123
, pp. 621-629
-
-
Rand, T.1
Petersen, S.2
Du, F.3
Wang, X.4
-
14
-
-
24644480213
-
Inhibition of translational initiation by Let-7 microRNA in human cells
-
Pillai RS, et al. (2005) Inhibition of translational initiation by Let-7 microRNA in human cells. Science 309:1573-1576.
-
(2005)
Science
, vol.309
, pp. 1573-1576
-
-
Pillai, R.S.1
-
15
-
-
34250685051
-
Structural biology of RNA silencing and its functional implications
-
Patel DJ, et al. (2006) Structural biology of RNA silencing and its functional implications. Cold Spring Harb Symp Quant Biol 71:81-93.
-
(2006)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 81-93
-
-
Patel, D.J.1
-
16
-
-
34250646697
-
Molecular mechanism of target RNA transcript recognition by Argonaute-guide complexes
-
Parker JS, Roe SM, Barford D (2006) Molecular mechanism of target RNA transcript recognition by Argonaute-guide complexes. Cold Spring Harb Symp Quant Biol. 71:45-50.
-
(2006)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 45-50
-
-
Parker, J.S.1
Roe, S.M.2
Barford, D.3
-
17
-
-
1442360415
-
RNase III enzymes and the initiation of gene silencing
-
Carmell MA, Hannon GJ (2004) RNase III enzymes and the initiation of gene silencing. Nat Struct Mol Biol 11:214-218.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 214-218
-
-
Carmell, M.A.1
Hannon, G.J.2
-
18
-
-
30844438338
-
Structural basis for double-stranded RNA processing by Dicer
-
Macrae IJ, et al. (2006) Structural basis for double-stranded RNA processing by Dicer. Science 311:195-198.
-
(2006)
Science
, vol.311
, pp. 195-198
-
-
Macrae, I.J.1
-
19
-
-
3142613181
-
Single processing center models for human Dicer and bacterial RNase III
-
Zhang H, Kolb F, Jaskiewicz L, Westhof E, Filipowicz W (2004) Single processing center models for human Dicer and bacterial RNase III. Cell 118:57-68.
-
(2004)
Cell
, vol.118
, pp. 57-68
-
-
Zhang, H.1
Kolb, F.2
Jaskiewicz, L.3
Westhof, E.4
Filipowicz, W.5
-
20
-
-
31044448524
-
Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
-
Gan J, et al. (2006) Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III. Cell 124:355-366.
-
(2006)
Cell
, vol.124
, pp. 355-366
-
-
Gan, J.1
-
21
-
-
0035662491
-
Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage
-
Blaszczyk J, et al. (2001) Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage. Structure (London) 9:1225-1236.
-
(2001)
Structure (London)
, vol.9
, pp. 1225-1236
-
-
Blaszczyk, J.1
-
22
-
-
1542581581
-
Noncatalytic assembly of ribonuclease III with double-stranded RNA
-
Blaszczyk J, et al. (2004) Noncatalytic assembly of ribonuclease III with double-stranded RNA. Structure (London) 12:457-466.
-
(2004)
Structure (London)
, vol.12
, pp. 457-466
-
-
Blaszczyk, J.1
-
23
-
-
26444436343
-
Intermediate states of ribonuclease III in complex with doublestranded RNA
-
Gan J, et al. (2005) Intermediate states of ribonuclease III in complex with doublestranded RNA. Structure (London) 13:1435-1442.
-
(2005)
Structure (London)
, vol.13
, pp. 1435-1442
-
-
Gan, J.1
-
24
-
-
25844471038
-
Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 Å
-
Akey DL, Berger JM (2005) Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 Å. Protein Sci 14:2744-2750.
-
(2005)
Protein Sci
, vol.14
, pp. 2744-2750
-
-
Akey, D.L.1
Berger, J.M.2
-
25
-
-
34250641109
-
Evolutionary conservation of a unique amino acid sequence in human DICER protein essential for binding to Argonaute family proteins
-
Sasakia T, Shimizu N (2007) Evolutionary conservation of a unique amino acid sequence in human DICER protein essential for binding to Argonaute family proteins. Gene 396:312-320.
-
(2007)
Gene
, vol.396
, pp. 312-320
-
-
Sasakia, T.1
Shimizu, N.2
-
26
-
-
35348983404
-
Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human dicer
-
Takeshita D, et al. (2007) Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human dicer. J Mol Biol 374:106-120.
-
(2007)
J Mol Biol
, vol.374
, pp. 106-120
-
-
Takeshita, D.1
-
27
-
-
23644433363
-
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
-
Chendrimada TP, et al. (2005) TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature 436:740-744.
-
(2005)
Nature
, vol.436
, pp. 740-744
-
-
Chendrimada, T.P.1
-
28
-
-
27144550559
-
TRBP, a regulator of cellular PKR, HIV-1 virus expression, interacts with Dicer and functions in RNA silencing
-
Haase AD, et al. (2005) TRBP, a regulator of cellular PKR, HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. EMBO Rep 6:961-967.
-
(2005)
EMBO Rep
, vol.6
, pp. 961-967
-
-
Haase, A.D.1
-
29
-
-
0028806062
-
Bovine pancreatic ribonuclease A as a model of an enzyme with multiple substrate binding sites
-
Nogués M, Vilanova M, Cuchillo C (1995) Bovine pancreatic ribonuclease A as a model of an enzyme with multiple substrate binding sites. Biochim Biophys Acta 1253:16-24.
-
(1995)
Biochim Biophys Acta
, vol.1253
, pp. 16-24
-
-
Nogués, M.1
Vilanova, M.2
Cuchillo, C.3
-
30
-
-
0022515682
-
The mechanism of binding of a polynucleotide chain to pancreatic ribonuclease
-
McPherson A, Brayer G, Cascio D, Williams R (1986) The mechanism of binding of a polynucleotide chain to pancreatic ribonuclease. Science 232:765-768.
-
(1986)
Science
, vol.232
, pp. 765-768
-
-
McPherson, A.1
Brayer, G.2
Cascio, D.3
Williams, R.4
-
31
-
-
0028101037
-
Crystal structure of ribonuclease A.d(ApTpApApG) complex: Direct evidence for extended substrate recognition
-
Fontecilla-Camps JC, de Llorens R, le Du MH, Cuchillo CM (1994) Crystal structure of ribonuclease A.d(ApTpApApG) complex: Direct evidence for extended substrate recognition. J Biol Chem 269:21526-21531.
-
(1994)
J Biol Chem
, vol.269
, pp. 21526-21531
-
-
Fontecilla-Camps, J.C.1
de Llorens, R.2
le Du, M.H.3
Cuchillo, C.M.4
-
32
-
-
0001005285
-
Ribonuclease A
-
Raines RT (1998) Ribonuclease A. Chem Rev 98:1045-1066.
-
(1998)
Chem Rev
, vol.98
, pp. 1045-1066
-
-
Raines, R.T.1
-
33
-
-
0032506110
-
Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases
-
Horton NC, Newberry KJ, Perona JJ (1998) Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases. Proc Natl Acad Sci USA 95:13489-13494.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 13489-13494
-
-
Horton, N.C.1
Newberry, K.J.2
Perona, J.J.3
-
34
-
-
0034687799
-
Catalysis of DNA cleavage and nucleoside triphosphate synthesis by NM23-H2/NDP kinase share an active site that implies a DNA repair function
-
Postel EH, Abramczyk BM, Levit MN, Kyin S (2000) Catalysis of DNA cleavage and nucleoside triphosphate synthesis by NM23-H2/NDP kinase share an active site that implies a DNA repair function. Proc Natl Acad Sci USA 97:14194-14199.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14194-14199
-
-
Postel, E.H.1
Abramczyk, B.M.2
Levit, M.N.3
Kyin, S.4
-
35
-
-
0035977011
-
Crystal structure at 1.5-Å resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility
-
Matsuura T, et al. (2001) Crystal structure at 1.5-Å resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility. J Biol Chem 276:45261-45269.
-
(2001)
J Biol Chem
, vol.276
, pp. 45261-45269
-
-
Matsuura, T.1
-
36
-
-
0037470067
-
Residues involved in the catalysis, base specificity, and cytotoxicity of ribonuclease from Rana catesbeiana based upon mutagenesis and x-ray crystallography
-
Leu Y-J, et al. (2003) Residues involved in the catalysis, base specificity, and cytotoxicity of ribonuclease from Rana catesbeiana based upon mutagenesis and x-ray crystallography. J Biol Chem 278:7300-7309.
-
(2003)
J Biol Chem
, vol.278
, pp. 7300-7309
-
-
Leu, Y.-J.1
-
37
-
-
33645826239
-
Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I
-
Strahs D, Zhu C-X, Cheng B, Chen J, Tse-Dinh Y-C (2006) Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I. Nucleic Acids Res 34:1785-1797.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1785-1797
-
-
Strahs, D.1
Zhu, C.-X.2
Cheng, B.3
Chen, J.4
Tse-Dinh, Y.-C.5
-
38
-
-
0023346161
-
Free energy calculations by computer simulation
-
Bash P, Singh U, Langridge R, Kollman P (1987) Free energy calculations by computer simulation. Science 236:564-568.
-
(1987)
Science
, vol.236
, pp. 564-568
-
-
Bash, P.1
Singh, U.2
Langridge, R.3
Kollman, P.4
-
39
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang H, Kolb FA, Brondani V, Billy E, Filipowicz W (2002) Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J 21:5875-5885.
-
(2002)
EMBO J
, vol.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
-
40
-
-
33644687877
-
Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomericDNAat 1.7 Å
-
Du Z, et al. (2005) Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomericDNAat 1.7 Å. J Biol Chem 280:38823-38830.
-
(2005)
J Biol Chem
, vol.280
, pp. 38823-38830
-
-
Du, Z.1
-
41
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski W (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, W.1
-
44
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D 60:2126-2132.
-
(2004)
Acta Crystallogr D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
45
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53:240-255.
-
(1997)
Acta Crystallogr D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
|