-
2
-
-
23644433363
-
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
-
T.P. Chendrimada, R.I. Gregory, E. Kumaraswamy, J. Norman, N. Cooch, K. Nishikura, and R. Shiekhattar TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing Nature 436 2005 740 744
-
(2005)
Nature
, vol.436
, pp. 740-744
-
-
Chendrimada, T.P.1
Gregory, R.I.2
Kumaraswamy, E.3
Norman, J.4
Cooch, N.5
Nishikura, K.6
Shiekhattar, R.7
-
3
-
-
0037592977
-
Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA
-
D.S. Cho, W. Yang, J.T. Lee, R. Shiekhattar, J.M. Murray, and K. Nishikura Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA J. Biol. Chem. 278 2003 17093 17102
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 17093-17102
-
-
Cho, D.S.1
Yang, W.2
Lee, J.T.3
Shiekhattar, R.4
Murray, J.M.5
Nishikura, K.6
-
4
-
-
66249134258
-
Characterization of the TRBP domain required for dicer interaction and function in RNA interference
-
S.M. Daniels, C.E. Melendez-Peña, R.J. Scarborough, A. Daher, H.S. Christensen, M. El Far, D.F. Purcell, S. Lainé, and A. Gatignol Characterization of the TRBP domain required for dicer interaction and function in RNA interference BMC Mol. Biol. 10 2009 38
-
(2009)
BMC Mol. Biol.
, vol.10
, pp. 38
-
-
Daniels, S.M.1
Melendez-Peña, C.E.2
Scarborough, R.J.3
Daher, A.4
Christensen, H.S.5
El Far, M.6
Purcell, D.F.7
Lainé, S.8
Gatignol, A.9
-
5
-
-
33750990797
-
DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold
-
M. Dlakić DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold Bioinformatics 22 2006 2711 2714
-
(2006)
Bioinformatics
, vol.22
, pp. 2711-2714
-
-
Dlakić, M.1
-
6
-
-
0029919746
-
Use of cis- and trans-ribozymes to remove 5′ and 3′ heterogeneities from milligrams of in vitro transcribed RNA
-
A.R. Ferré-D'Amaré, and J.A. Doudna Use of cis- and trans-ribozymes to remove 5′ and 3′ heterogeneities from milligrams of in vitro transcribed RNA Nucleic Acids Res. 24 1996 977 978
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 977-978
-
-
Ferré-D'Amaré, A.R.1
Doudna, J.A.2
-
7
-
-
62849103689
-
RNA-regulated interaction of transportin-1 and exportin-5 with the double-stranded RNA-binding domain regulates nucleocytoplasmic shuttling of ADAR1
-
J. Fritz, A. Strehblow, A. Taschner, S. Schopoff, P. Pasierbek, and M.F. Jantsch RNA-regulated interaction of transportin-1 and exportin-5 with the double-stranded RNA-binding domain regulates nucleocytoplasmic shuttling of ADAR1 Mol. Cell. Biol. 29 2009 1487 1497
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1487-1497
-
-
Fritz, J.1
Strehblow, A.2
Taschner, A.3
Schopoff, S.4
Pasierbek, P.5
Jantsch, M.F.6
-
8
-
-
27744537851
-
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
-
R.I. Gregory, T.P. Chendrimada, N. Cooch, and R. Shiekhattar Human RISC couples microRNA biogenesis and posttranscriptional gene silencing Cell 123 2005 631 640
-
(2005)
Cell
, vol.123
, pp. 631-640
-
-
Gregory, R.I.1
Chendrimada, T.P.2
Cooch, N.3
Shiekhattar, R.4
-
9
-
-
27144550559
-
TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing
-
A.D. Haase, L. Jaskiewicz, H. Zhang, S. Lainé, R. Sack, A. Gatignol, and W. Filipowicz TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing EMBO Rep. 6 2005 961 967
-
(2005)
EMBO Rep.
, vol.6
, pp. 961-967
-
-
Haase, A.D.1
Jaskiewicz, L.2
Zhang, H.3
Lainé, S.4
Sack, R.5
Gatignol, A.6
Filipowicz, W.7
-
10
-
-
1042278125
-
Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1
-
J.C. Hartner, C. Schmittwolf, A. Kispert, A.M. Müller, M. Higuchi, and P.H. Seeburg Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1 J. Biol. Chem. 279 2004 4894 4902
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 4894-4902
-
-
Hartner, J.C.1
Schmittwolf, C.2
Kispert, A.3
Müller, A.M.4
Higuchi, M.5
Seeburg, P.H.6
-
11
-
-
57849136005
-
ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling
-
J.C. Hartner, C.R. Walkley, J. Lu, and S.H. Orkin ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling Nat. Immunol. 10 2009 109 115
-
(2009)
Nat. Immunol.
, vol.10
, pp. 109-115
-
-
Hartner, J.C.1
Walkley, C.R.2
Lu, J.3
Orkin, S.H.4
-
12
-
-
4444248655
-
Oligomerization activity of a double-stranded RNA-binding domain
-
E.G. Hitti, N.B. Sallacz, V.K. Schoft, and M.F. Jantsch Oligomerization activity of a double-stranded RNA-binding domain FEBS Lett. 574 2004 25 30
-
(2004)
FEBS Lett.
, vol.574
, pp. 25-30
-
-
Hitti, E.G.1
Sallacz, N.B.2
Schoft, V.K.3
Jantsch, M.F.4
-
13
-
-
81855226648
-
Editing of neurotransmitter receptor and ion channel RNAs in the nervous system
-
J.L. Hood, and R.B. Emeson Editing of neurotransmitter receptor and ion channel RNAs in the nervous system Curr. Top. Microbiol. Immunol. 353 2012 61 90
-
(2012)
Curr. Top. Microbiol. Immunol.
, vol.353
, pp. 61-90
-
-
Hood, J.L.1
Emeson, R.B.2
-
14
-
-
77958483268
-
Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency
-
H. Iizasa, B.E. Wulff, N.R. Alla, M. Maragkakis, M. Megraw, A. Hatzigeorgiou, D. Iwakiri, K. Takada, A. Wiedmer, and L. Showe Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency J. Biol. Chem. 285 2010 33358 33370
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 33358-33370
-
-
Iizasa, H.1
Wulff, B.E.2
Alla, N.R.3
Maragkakis, M.4
Megraw, M.5
Hatzigeorgiou, A.6
Iwakiri, D.7
Takada, K.8
Wiedmer, A.9
Showe, L.10
-
15
-
-
34547629436
-
RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex
-
Y. Kawahara, B. Zinshteyn, T.P. Chendrimada, R. Shiekhattar, and K. Nishikura RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex EMBO Rep. 8 2007 763 769
-
(2007)
EMBO Rep.
, vol.8
, pp. 763-769
-
-
Kawahara, Y.1
Zinshteyn, B.2
Chendrimada, T.P.3
Shiekhattar, R.4
Nishikura, K.5
-
16
-
-
33847317017
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
-
Y. Kawahara, B. Zinshteyn, P. Sethupathy, H. Iizasa, A.G. Hatzigeorgiou, and K. Nishikura Redirection of silencing targets by adenosine-to-inosine editing of miRNAs Science 315 2007 1137 1140
-
(2007)
Science
, vol.315
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
17
-
-
52649128795
-
Frequency and fate of microRNA editing in human brain
-
Y. Kawahara, M. Megraw, E. Kreider, H. Iizasa, L. Valente, A.G. Hatzigeorgiou, and K. Nishikura Frequency and fate of microRNA editing in human brain Nucleic Acids Res. 36 2008 5270 5280
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5270-5280
-
-
Kawahara, Y.1
Megraw, M.2
Kreider, E.3
Iizasa, H.4
Valente, L.5
Hatzigeorgiou, A.G.6
Nishikura, K.7
-
18
-
-
82755170606
-
The role of Dicer protein partners in the processing of microRNA precursors
-
E. Koscianska, J. Starega-Roslan, and W.J. Krzyzosiak The role of Dicer protein partners in the processing of microRNA precursors PLoS ONE 6 2011 e28548
-
(2011)
PLoS ONE
, vol.6
, pp. 28548
-
-
Koscianska, E.1
Starega-Roslan, J.2
Krzyzosiak, W.J.3
-
19
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
J. Krol, I. Loedige, and W. Filipowicz The widespread regulation of microRNA biogenesis, function and decay Nat. Rev. Genet. 11 2010 597 610
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
20
-
-
0029125209
-
Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts
-
F. Lai, R. Drakas, and K. Nishikura Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts J. Biol. Chem. 270 1995 17098 17105
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 17098-17105
-
-
Lai, F.1
Drakas, R.2
Nishikura, K.3
-
21
-
-
57049148002
-
Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs
-
M. Landthaler, D. Gaidatzis, A. Rothballer, P.Y. Chen, S.J. Soll, L. Dinic, T. Ojo, M. Hafner, M. Zavolan, and T. Tuschl Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs RNA 14 2008 2580 2596
-
(2008)
RNA
, vol.14
, pp. 2580-2596
-
-
Landthaler, M.1
Gaidatzis, D.2
Rothballer, A.3
Chen, P.Y.4
Soll, S.J.5
Dinic, L.6
Ojo, T.7
Hafner, M.8
Zavolan, M.9
Tuschl, T.10
-
22
-
-
32544460452
-
The role of PACT in the RNA silencing pathway
-
Y. Lee, I. Hur, S.Y. Park, Y.K. Kim, M.R. Suh, and V.N. Kim The role of PACT in the RNA silencing pathway EMBO J. 25 2006 522 532
-
(2006)
EMBO J.
, vol.25
, pp. 522-532
-
-
Lee, Y.1
Hur, I.2
Park, S.Y.3
Kim, Y.K.4
Suh, M.R.5
Kim, V.N.6
-
23
-
-
4444368187
-
Argonaute2 is the catalytic engine of mammalian RNAi
-
J. Liu, M.A. Carmell, F.V. Rivas, C.G. Marsden, J.M. Thomson, J.J. Song, S.M. Hammond, L. Joshua-Tor, and G.J. Hannon Argonaute2 is the catalytic engine of mammalian RNAi Science 305 2004 1437 1441
-
(2004)
Science
, vol.305
, pp. 1437-1441
-
-
Liu, J.1
Carmell, M.A.2
Rivas, F.V.3
Marsden, C.G.4
Thomson, J.M.5
Song, J.J.6
Hammond, S.M.7
Joshua-Tor, L.8
Hannon, G.J.9
-
24
-
-
44649136660
-
Autoinhibition of human dicer by its internal helicase domain
-
E. Ma, I.J. MacRae, J.F. Kirsch, and J.A. Doudna Autoinhibition of human dicer by its internal helicase domain J. Mol. Biol. 380 2008 237 243
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 237-243
-
-
Ma, E.1
MacRae, I.J.2
Kirsch, J.F.3
Doudna, J.A.4
-
25
-
-
77953898940
-
A MicroRNA targeting dicer for metastasis control
-
G. Martello, A. Rosato, F. Ferrari, A. Manfrin, M. Cordenonsi, S. Dupont, E. Enzo, V. Guzzardo, M. Rondina, and T. Spruce A MicroRNA targeting dicer for metastasis control Cell 141 2010 1195 1207
-
(2010)
Cell
, vol.141
, pp. 1195-1207
-
-
Martello, G.1
Rosato, A.2
Ferrari, F.3
Manfrin, A.4
Cordenonsi, M.5
Dupont, S.6
Enzo, E.7
Guzzardo, V.8
Rondina, M.9
Spruce, T.10
-
26
-
-
3242736704
-
Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
-
G. Meister, M. Landthaler, A. Patkaniowska, Y. Dorsett, G. Teng, and T. Tuschl Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs Mol. Cell 15 2004 185 197
-
(2004)
Mol. Cell
, vol.15
, pp. 185-197
-
-
Meister, G.1
Landthaler, M.2
Patkaniowska, A.3
Dorsett, Y.4
Teng, G.5
Tuschl, T.6
-
27
-
-
57749089758
-
Down-regulation of micro-RNA-1 (miR-1) in lung cancer. Suppression of tumorigenic property of lung cancer cells and their sensitization to doxorubicin-induced apoptosis by miR-1
-
M.W. Nasser, J. Datta, G. Nuovo, H. Kutay, T. Motiwala, S. Majumder, B. Wang, S. Suster, S.T. Jacob, and K. Ghoshal Down-regulation of micro-RNA-1 (miR-1) in lung cancer. Suppression of tumorigenic property of lung cancer cells and their sensitization to doxorubicin-induced apoptosis by miR-1 J. Biol. Chem. 283 2008 33394 33405
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 33394-33405
-
-
Nasser, M.W.1
Datta, J.2
Nuovo, G.3
Kutay, H.4
Motiwala, T.5
Majumder, S.6
Wang, B.7
Suster, S.8
Jacob, S.T.9
Ghoshal, K.10
-
28
-
-
33845315229
-
Editor meets silencer: Crosstalk between RNA editing and RNA interference
-
K. Nishikura Editor meets silencer: crosstalk between RNA editing and RNA interference Nat. Rev. Mol. Cell Biol. 7 2006 919 931
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 919-931
-
-
Nishikura, K.1
-
29
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
K. Nishikura Functions and regulation of RNA editing by ADAR deaminases Annu. Rev. Biochem. 79 2010 321 349
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
30
-
-
84861970552
-
Accurate identification of human Alu and non-Alu RNA editing sites
-
G. Ramaswami, W. Lin, R. Piskol, M.H. Tan, C. Davis, and J.B. Li Accurate identification of human Alu and non-Alu RNA editing sites Nat. Methods 9 2012 579 581
-
(2012)
Nat. Methods
, vol.9
, pp. 579-581
-
-
Ramaswami, G.1
Lin, W.2
Piskol, R.3
Tan, M.H.4
Davis, C.5
Li, J.B.6
-
31
-
-
33645812734
-
A role of the double-stranded RNA-binding protein PACT in mouse ear development and hearing
-
T.M. Rowe, M. Rizzi, K. Hirose, G.A. Peters, and G.C. Sen A role of the double-stranded RNA-binding protein PACT in mouse ear development and hearing Proc. Natl. Acad. Sci. USA 103 2006 5823 5828
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5823-5828
-
-
Rowe, T.M.1
Rizzi, M.2
Hirose, K.3
Peters, G.A.4
Sen, G.C.5
-
32
-
-
22144444302
-
The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage
-
A.D. Scadden The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage Nat. Struct. Mol. Biol. 12 2005 489 496
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 489-496
-
-
Scadden, A.D.1
-
33
-
-
34447542355
-
RNA binding-independent dimerization of adenosine deaminases acting on RNA and dominant negative effects of nonfunctional subunits on dimer functions
-
L. Valente, and K. Nishikura RNA binding-independent dimerization of adenosine deaminases acting on RNA and dominant negative effects of nonfunctional subunits on dimer functions J. Biol. Chem. 282 2007 16054 16061
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 16054-16061
-
-
Valente, L.1
Nishikura, K.2
-
34
-
-
1042289736
-
Stress-induced apoptosis associated with null mutation of ADAR1 RNA editing deaminase gene
-
Q. Wang, M. Miyakoda, W. Yang, J. Khillan, D.L. Stachura, M.J. Weiss, and K. Nishikura Stress-induced apoptosis associated with null mutation of ADAR1 RNA editing deaminase gene J. Biol. Chem. 279 2004 4952 4961
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 4952-4961
-
-
Wang, Q.1
Miyakoda, M.2
Yang, W.3
Khillan, J.4
Stachura, D.L.5
Weiss, M.J.6
Nishikura, K.7
-
35
-
-
80455164552
-
Competition between ADAR and RNAi pathways for an extensive class of RNA targets
-
D. Wu, A.T. Lamm, and A.Z. Fire Competition between ADAR and RNAi pathways for an extensive class of RNA targets Nat. Struct. Mol. Biol. 18 2011 1094 1101
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1094-1101
-
-
Wu, D.1
Lamm, A.T.2
Fire, A.Z.3
-
36
-
-
84867380174
-
MicroRNA-181a represses ox-LDL-stimulated inflammatory response in dendritic cell by targeting c-Fos
-
KaiHu
-
C. Wu, Y. Gong, J. Yuan, W. Zhang, G. Zhao, H. Li, A. Sun, Y. Zou, J. Ge KaiHu microRNA-181a represses ox-LDL-stimulated inflammatory response in dendritic cell by targeting c-Fos J. Lipid Res. 53 2012 2355 2363
-
(2012)
J. Lipid Res.
, vol.53
, pp. 2355-2363
-
-
Wu, C.1
Gong, Y.2
Yuan, J.3
Zhang, W.4
Zhao, G.5
Li, H.6
Sun, A.7
Zou, Y.8
Ge, J.9
-
37
-
-
30044443191
-
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
-
W. Yang, T.P. Chendrimada, Q. Wang, M. Higuchi, P.H. Seeburg, R. Shiekhattar, and K. Nishikura Modulation of microRNA processing and expression through RNA editing by ADAR deaminases Nat. Struct. Mol. Biol. 13 2006 13 21
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 13-21
-
-
Yang, W.1
Chendrimada, T.P.2
Wang, Q.3
Higuchi, M.4
Seeburg, P.H.5
Shiekhattar, R.6
Nishikura, K.7
-
38
-
-
34147153781
-
Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2
-
Y. Zhao, J.F. Ransom, A. Li, V. Vedantham, M. von Drehle, A.N. Muth, T. Tsuchihashi, M.T. McManus, R.J. Schwartz, and D. Srivastava Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2 Cell 129 2007 303 317
-
(2007)
Cell
, vol.129
, pp. 303-317
-
-
Zhao, Y.1
Ransom, J.F.2
Li, A.3
Vedantham, V.4
Von Drehle, M.5
Muth, A.N.6
Tsuchihashi, T.7
McManus, M.T.8
Schwartz, R.J.9
Srivastava, D.10
-
39
-
-
0033052048
-
A double-stranded RNA binding protein required for activation of repressed messages in mammalian germ cells
-
J. Zhong, A.H. Peters, K. Lee, and R.E. Braun A double-stranded RNA binding protein required for activation of repressed messages in mammalian germ cells Nat. Genet. 22 1999 171 174
-
(1999)
Nat. Genet.
, vol.22
, pp. 171-174
-
-
Zhong, J.1
Peters, A.H.2
Lee, K.3
Braun, R.E.4
-
40
-
-
58149189877
-
GtRNAdb: A database of transfer RNA genes detected in genomic sequence
-
DATABASE ISSUE
-
P.P. Chan, and T.M. Lowe GtRNAdb: a database of transfer RNA genes detected in genomic sequence Nucleic Acids Res. 37 Database issue 2009 D93 D97
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Chan, P.P.1
Lowe, T.M.2
-
41
-
-
84859865967
-
The UCSC Genome Browser database: Extensions and updates 2011
-
DATABASE ISSUE
-
T.R. Dreszer, D. Karolchik, A.S. Zweig, A.S. Hinrichs, B.J. Raney, R.M. Kuhn, L.R. Meyer, M. Wong, C.A. Sloan, and K.R. Rosenbloom The UCSC Genome Browser database: extensions and updates 2011 Nucleic Acids Res. 40 Database issue 2012 D918 D923
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Dreszer, T.R.1
Karolchik, D.2
Zweig, A.S.3
Hinrichs, A.S.4
Raney, B.J.5
Kuhn, R.M.6
Meyer, L.R.7
Wong, M.8
Sloan, C.A.9
Rosenbloom, K.R.10
-
42
-
-
84858221706
-
Ensembl 2012
-
DATABASE ISSUE
-
P. Flicek, M.R. Amode, D. Barrell, K. Beal, S. Brent, D. Carvalho-Silva, P. Clapham, G. Coates, S. Fairley, and S. Fitzgerald Ensembl 2012 Nucleic Acids Res. 40 Database issue 2012 D84 D90
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
43
-
-
14044251458
-
Human MicroRNA targets
-
B. John, A.J. Enright, A. Aravin, T. Tuschl, C. Sander, and D.S. Marks Human MicroRNA targets PLoS Biol. 2 2004 e363
-
(2004)
PLoS Biol.
, vol.2
, pp. 363
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
44
-
-
34047177954
-
Specific residues at every third position of siRNA shape its efficient RNAi activity
-
T. Katoh, and T. Suzuki Specific residues at every third position of siRNA shape its efficient RNAi activity Nucleic Acids Res. 35 2007 e27
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 27
-
-
Katoh, T.1
Suzuki, T.2
-
45
-
-
33846056835
-
FRNAdb: A platform for mining/annotating functional RNA candidates from non-coding RNA sequences
-
DATABASE ISSUE
-
T. Kin, K. Yamada, G. Terai, H. Okida, Y. Yoshinari, Y. Ono, A. Kojima, Y. Kimura, T. Komori, and K. Asai fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences Nucleic Acids Res. 35 Database issue 2007 D145 D148
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kin, T.1
Yamada, K.2
Terai, G.3
Okida, H.4
Yoshinari, Y.5
Ono, Y.6
Kojima, A.7
Kimura, Y.8
Komori, T.9
Asai, K.10
-
46
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
DATABASE ISSUE
-
A. Kozomara, and S. Griffiths-Jones miRBase: integrating microRNA annotation and deep-sequencing data Nucleic Acids Res. 39 Database issue 2011 D152 D157
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
47
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
B. Langmead, C. Trapnell, M. Pop, and S.L. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol. 10 2009 R25
-
(2009)
Genome Biol.
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
48
-
-
33746527679
-
Characterization of the piRNA complex from rat testes
-
N.C. Lau, A.G. Seto, J. Kim, S. Kuramochi-Miyagawa, T. Nakano, D.P. Bartel, and R.E. Kingston Characterization of the piRNA complex from rat testes Science 313 2006 363 367
-
(2006)
Science
, vol.313
, pp. 363-367
-
-
Lau, N.C.1
Seto, A.G.2
Kim, J.3
Kuramochi-Miyagawa, S.4
Nakano, T.5
Bartel, D.P.6
Kingston, R.E.7
-
49
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
T.M. Lowe, and S.R. Eddy tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res. 25 1997 955 964
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
50
-
-
0035811009
-
RNA editing activity is associated with splicing factors in lnRNP particles: The nuclear pre-mRNA processing machinery
-
O. Raitskin, D.S. Cho, J. Sperling, K. Nishikura, and R. Sperling RNA editing activity is associated with splicing factors in lnRNP particles: The nuclear pre-mRNA processing machinery Proc. Natl. Acad. Sci. USA 98 2001 6571 6576
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6571-6576
-
-
Raitskin, O.1
Cho, D.S.2
Sperling, J.3
Nishikura, K.4
Sperling, R.5
-
51
-
-
79952709611
-
Improving RNA-Seq expression estimates by correcting for fragment bias
-
A. Roberts, C. Trapnell, J. Donaghey, J.L. Rinn, and L. Pachter Improving RNA-Seq expression estimates by correcting for fragment bias Genome Biol. 12 2011 R22
-
(2011)
Genome Biol.
, vol.12
, pp. 22
-
-
Roberts, A.1
Trapnell, C.2
Donaghey, J.3
Rinn, J.L.4
Pachter, L.5
-
52
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
C. Trapnell, B.A. Williams, G. Pertea, A. Mortazavi, G. Kwan, M.J. van Baren, S.L. Salzberg, B.J. Wold, and L. Pachter Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Nat. Biotechnol. 28 2010 511 515
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
53
-
-
33846056836
-
Sno/scaRNAbase: A curated database for small nucleolar RNAs and cajal body-specific RNAs
-
DATABASE ISSUE
-
J. Xie, M. Zhang, T. Zhou, X. Hua, L. Tang, and W. Wu Sno/scaRNAbase: a curated database for small nucleolar RNAs and cajal body-specific RNAs Nucleic Acids Res. 35 Database issue 2007 D183 D187
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Xie, J.1
Zhang, M.2
Zhou, T.3
Hua, X.4
Tang, L.5
Wu, W.6
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