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Volumn 9, Issue 1, 2014, Pages

Allosteric regulation of the Hsp90 dynamics and stability by client recruiter cochaperones: Protein structure network modeling

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; CHAPERONE; CHAPERONE REQUIRED FOR MLA12 RESISTANCE; CHAPERONE SUPPRESSOR OF G2 ALLELE OF SKP1; HEAT SHOCK PROTEIN 90; UNCLASSIFIED DRUG; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE PROTEIN; COCHAPERONE; PROTEIN;

EID: 84903215285     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0086547     Document Type: Article
Times cited : (32)

References (124)
  • 1
    • 0035718899 scopus 로고    scopus 로고
    • Structure, function, and mechanism of the Hsp90 molecular chaperone
    • Pearl LH, Prodromou C (2001) Structure, function, and mechanism of the Hsp90 molecular chaperone. Adv Protein Chem 59: 157-186.
    • (2001) Adv Protein Chem , vol.59 , pp. 157-186
    • Pearl, L.H.1    Prodromou, C.2
  • 2
    • 20044382800 scopus 로고    scopus 로고
    • Navigating the chaperone network: An integrative map of physical and genetic interactions mediated by the hsp90 chaperone
    • Zhao R, Davey M, Hsu YC, Kaplanek P, Tong A, et al. (2005) Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone. Cell 120: 715-727.
    • (2005) Cell , vol.120 , pp. 715-727
    • Zhao, R.1    Davey, M.2    Hsu, Y.C.3    Kaplanek, P.4    Tong, A.5
  • 3
    • 34848926209 scopus 로고    scopus 로고
    • Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches
    • McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, et al. (2007) Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell 131: 121-135.
    • (2007) Cell , vol.131 , pp. 121-135
    • McClellan, A.J.1    Xia, Y.2    Deutschbauer, A.M.3    Davis, R.W.4    Gerstein, M.5
  • 4
    • 84934439633 scopus 로고    scopus 로고
    • Molecular interaction network of the Hsp90 chaperone system
    • Zhao R, Houry WA (2007) Molecular interaction network of the Hsp90 chaperone system. Adv Exp Med Biol 594: 27-36.
    • (2007) Adv Exp Med Biol , vol.594 , pp. 27-36
    • Zhao, R.1    Houry, W.A.2
  • 5
    • 77953916528 scopus 로고    scopus 로고
    • Hsp90 at the hub of protein homeostasis: Emerging mechanistic insights
    • Taipale M, Jarosz DF, Lindquist S (2010) Hsp90 at the hub of protein homeostasis: emerging mechanistic insights. Nat Rev Mol Cell Biol 11: 515-528.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 515-528
    • Taipale, M.1    Jarosz, D.F.2    Lindquist, S.3
  • 6
    • 84865695733 scopus 로고    scopus 로고
    • Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition
    • Taipale M, Krykbaeva I, Koeva M, Kayatekin C, Westover KD, et al. (2012) Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition. Cell 150: 987-1001.
    • (2012) Cell , vol.150 , pp. 987-1001
    • Taipale, M.1    Krykbaeva, I.2    Koeva, M.3    Kayatekin, C.4    Westover, K.D.5
  • 7
    • 33646176246 scopus 로고    scopus 로고
    • Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex
    • Ali MM, Roe SM, Vaughan CK, Meyer P, Panaretou B, et al. (2006) Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex. Nature 440: 1013-1017.
    • (2006) Nature , vol.440 , pp. 1013-1017
    • Ali, M.M.1    Roe, S.M.2    Vaughan, C.K.3    Meyer, P.4    Panaretou, B.5
  • 8
    • 33750008686 scopus 로고    scopus 로고
    • Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements
    • Shiau AK, Harris SF, Southworth DR, Agard DA (2006) Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements. Cell 127: 329-340.
    • (2006) Cell , vol.127 , pp. 329-340
    • Shiau, A.K.1    Harris, S.F.2    Southworth, D.R.3    Agard, D.A.4
  • 9
    • 34948893963 scopus 로고    scopus 로고
    • Structures of GRP94-nucleotide complexes reveal mechanistic differences between the hsp90 chaperones
    • Dollins DE, Warren JJ, Immormino RM, Gewirth DT (2007) Structures of GRP94-nucleotide complexes reveal mechanistic differences between the hsp90 chaperones. Mol Cell 28: 41-56.
    • (2007) Mol Cell , vol.28 , pp. 41-56
    • Dollins, D.E.1    Warren, J.J.2    Immormino, R.M.3    Gewirth, D.T.4
  • 10
    • 33746364784 scopus 로고    scopus 로고
    • Structure and mechanism of the Hsp90 molecular chaperone machinery
    • Pearl LH, Prodromou C (2006) Structure and mechanism of the Hsp90 molecular chaperone machinery. Annu Rev Biochem 75: 271-294.
    • (2006) Annu Rev Biochem , vol.75 , pp. 271-294
    • Pearl, L.H.1    Prodromou, C.2
  • 12
    • 84874506372 scopus 로고    scopus 로고
    • Hsp90: Structure and function
    • Jackson SE (2013) Hsp90: structure and function. Top Curr Chem 328: 155-240.
    • (2013) Top Curr Chem , vol.328 , pp. 155-240
    • Jackson, S.E.1
  • 13
    • 84881218748 scopus 로고    scopus 로고
    • Structure, function and regulation of the hsp90 machinery
    • Li J, Buchner J (2013) Structure, function and regulation of the hsp90 machinery. Biomed J 36: 106-117.
    • (2013) Biomed J , vol.36 , pp. 106-117
    • Li, J.1    Buchner, J.2
  • 14
    • 61949212626 scopus 로고    scopus 로고
    • The large conformational changes of Hsp90 are only weakly coupled to ATP hydrolysis
    • Mickler M, Hessling M, Ratzke C, Buchner J, Hugel T (2009) The large conformational changes of Hsp90 are only weakly coupled to ATP hydrolysis. Nat Struct Mol Biol 16: 281-286.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 281-286
    • Mickler, M.1    Hessling, M.2    Ratzke, C.3    Buchner, J.4    Hugel, T.5
  • 15
    • 84867051420 scopus 로고    scopus 로고
    • From a ratchet mechanism to random fluctuations evolution of Hsp90's mechanochemical cycle
    • Ratzke C, Nguyen MN, Mayer MP, Hugel T (2012) From a ratchet mechanism to random fluctuations evolution of Hsp90's mechanochemical cycle. J Mol Biol 423: 462-471.
    • (2012) J Mol Biol , vol.423 , pp. 462-471
    • Ratzke, C.1    Nguyen, M.N.2    Mayer, M.P.3    Hugel, T.4
  • 16
    • 84857051938 scopus 로고    scopus 로고
    • The 'active life' of Hsp90 complexes
    • Prodromou C (2012) The 'active life' of Hsp90 complexes. Biochim Biophys Acta 1823: 614-623.
    • (2012) Biochim Biophys Acta , vol.1823 , pp. 614-623
    • Prodromou, C.1
  • 17
    • 84857042271 scopus 로고    scopus 로고
    • The Hsp90 chaperone machinery: Conformational dynamics and regulation by cochaperones
    • Li J, Soroka J, Buchner J (2012) The Hsp90 chaperone machinery: conformational dynamics and regulation by cochaperones. Biochim Biophys Acta 1823: 624-635.
    • (2012) Biochim Biophys Acta , vol.1823 , pp. 624-635
    • Li, J.1    Soroka, J.2    Buchner, J.3
  • 18
    • 84857053558 scopus 로고    scopus 로고
    • The role of Hsp90 in protein complex assembly
    • Makhnevych T, Houry WA (2012) The role of Hsp90 in protein complex assembly. Biochim Biophys Acta 1823: 674-682.
    • (2012) Biochim Biophys Acta , vol.1823 , pp. 674-682
    • Makhnevych, T.1    Houry, W.A.2
  • 19
    • 84876707777 scopus 로고    scopus 로고
    • The chaperone Hsp90: Changing partners for demanding clients
    • Röhl A, Rohrberg J, Buchner J (2013) The chaperone Hsp90: changing partners for demanding clients. Trends Biochem Sci 38: 253-262.
    • (2013) Trends Biochem Sci , vol.38 , pp. 253-262
    • Röhl, A.1    Rohrberg, J.2    Buchner, J.3
  • 20
    • 33846588436 scopus 로고    scopus 로고
    • Cdc37 has distinct roles in protein kinase quality control that protect nascent chains from degradation and promote posttranslational maturation
    • Mandal AK, Lee P, Chen JA, Nillegoda N, Heller A, et al. (2007) Cdc37 has distinct roles in protein kinase quality control that protect nascent chains from degradation and promote posttranslational maturation. J Cell Biol 176: 319-328.
    • (2007) J Cell Biol , vol.176 , pp. 319-328
    • Mandal, A.K.1    Lee, P.2    Chen, J.A.3    Nillegoda, N.4    Heller, A.5
  • 22
    • 0037036458 scopus 로고    scopus 로고
    • Regulation of Hsp90 ATPase activity by the co-chaperone Cdc37p/p50cdc37
    • Siligardi G, Panaretou B, Meyer P, Singh S, Woolfson DN, et al. (2002) Regulation of Hsp90 ATPase activity by the co-chaperone Cdc37p/p50cdc37. J Biol Chem 277: 20151-20159.
    • (2002) J Biol Chem , vol.277 , pp. 20151-20159
    • Siligardi, G.1    Panaretou, B.2    Meyer, P.3    Singh, S.4    Woolfson, D.N.5
  • 23
    • 0742269688 scopus 로고    scopus 로고
    • The mechanism of Hsp90 regulation by the protein kinase-specific cochaperone p50(cdc37)
    • Roe SM, Ali MMU, Meyer P, Vaughan CK, Panaretou B, et al. (2004) The mechanism of Hsp90 regulation by the protein kinase-specific cochaperone p50(cdc37). Cell 116: 87-98.
    • (2004) Cell , vol.116 , pp. 87-98
    • Roe, S.M.1    Ali, M.M.U.2    Meyer, P.3    Vaughan, C.K.4    Panaretou, B.5
  • 24
  • 25
    • 63549083573 scopus 로고    scopus 로고
    • The human Cdc37.Hsp90 complex studied by heteronuclear NMR spectroscopy
    • Sreeramulu S, Jonker HR, Langer T, Richter C, Lancaster CR, et al. (2009) The human Cdc37.Hsp90 complex studied by heteronuclear NMR spectroscopy. J Biol Chem 284: 3885-3896.
    • (2009) J Biol Chem , vol.284 , pp. 3885-3896
    • Sreeramulu, S.1    Jonker, H.R.2    Langer, T.3    Richter, C.4    Lancaster, C.R.5
  • 26
    • 0032724487 scopus 로고    scopus 로고
    • A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans
    • Shirasu K, Lahaye T, Tan MW, Zhou F, Azevedo C, et al. (1999) A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans. Cell 99: 355-366.
    • (1999) Cell , vol.99 , pp. 355-366
    • Shirasu, K.1    Lahaye, T.2    Tan, M.W.3    Zhou, F.4    Azevedo, C.5
  • 27
    • 0037086007 scopus 로고    scopus 로고
    • The RAR1 interactor SGT1, an essential component of R gene-triggered disease resistance
    • Azevedo C, Sadanandom A, Kitagawa K, Freialdenhoven A, Shirasu K, et al. (2002) The RAR1 interactor SGT1, an essential component of R gene-triggered disease resistance. Science 295: 2073-2076.
    • (2002) Science , vol.295 , pp. 2073-2076
    • Azevedo, C.1    Sadanandom, A.2    Kitagawa, K.3    Freialdenhoven, A.4    Shirasu, K.5
  • 28
    • 0141705339 scopus 로고    scopus 로고
    • HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis
    • Takahashi A, Casais C, Ichimura K, Shirasu K (2003) HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis. Proc Natl Acad Sci USA 100: 11777-11782.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 11777-11782
    • Takahashi, A.1    Casais, C.2    Ichimura, K.3    Shirasu, K.4
  • 29
    • 0242556837 scopus 로고    scopus 로고
    • Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease resistance protein
    • Hubert DA, Tornero P, Belkhadir Y, Krishna P, Takahashi A, et al. (2003) Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease resistance protein, EMBO J 22: 5679-5689.
    • (2003) EMBO J , vol.22 , pp. 5679-5689
    • Hubert, D.A.1    Tornero, P.2    Belkhadir, Y.3    Krishna, P.4    Takahashi, A.5
  • 30
    • 67649858826 scopus 로고    scopus 로고
    • Specific Arabidopsis HSP90.2 alleles recapitulate RAR1 cochaperone function in plant NB-LRR disease resistance protein regulation
    • Hubert DA, He Y, McNulty BC, Tornero P, Dangl JL (2009) Specific Arabidopsis HSP90.2 alleles recapitulate RAR1 cochaperone function in plant NB-LRR disease resistance protein regulation. Proc Natl Acad Sci USA 106: 9556-9563.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9556-9563
    • Hubert, D.A.1    He, Y.2    McNulty, B.C.3    Tornero, P.4    Dangl, J.L.5
  • 31
    • 77950962425 scopus 로고    scopus 로고
    • NLR sensors meet at the SGT1-HSP90 crossroad
    • Kadota Y, Shirasu K, Guerois R (2010) NLR sensors meet at the SGT1-HSP90 crossroad. Trends Biochem Sci 35: 199-207.
    • (2010) Trends Biochem Sci , vol.35 , pp. 199-207
    • Kadota, Y.1    Shirasu, K.2    Guerois, R.3
  • 32
  • 33
    • 0037086347 scopus 로고    scopus 로고
    • Regulatory role of SGT1 in early R gene-mediated plant defenses
    • Austin MJ, Muskett P, Kahn K, Feys BJ, Jones JD, et al. (2002) Regulatory role of SGT1 in early R gene-mediated plant defenses. Science 295: 2077-2080.
    • (2002) Science , vol.295 , pp. 2077-2080
    • Austin, M.J.1    Muskett, P.2    Kahn, K.3    Feys, B.J.4    Jones, J.D.5
  • 34
    • 1942436961 scopus 로고    scopus 로고
    • Human Sgt1 binds HSP90 through the CHORD-Sgt1 domain and not the tetratricopeptide repeat domain
    • Lee YT, Jacob J, Michowski W, Nowotny M, Kuznicki J et al. (2004) Human Sgt1 binds HSP90 through the CHORD-Sgt1 domain and not the tetratricopeptide repeat domain. J Biol Chem 279: 16511-16517.
    • (2004) J Biol Chem , vol.279 , pp. 16511-16517
    • Lee, Y.T.1    Jacob, J.2    Michowski, W.3    Nowotny, M.4    Kuznicki, J.5
  • 35
    • 33845959149 scopus 로고    scopus 로고
    • Sgt1p is a unique co-chaperone that acts as a client adaptor to link Hsp90 to Skp1p
    • Catlett MG, Kaplan KB (2006) Sgt1p is a unique co-chaperone that acts as a client adaptor to link Hsp90 to Skp1p. J Biol Chem 281: 33739-33748.
    • (2006) J Biol Chem , vol.281 , pp. 33739-33748
    • Catlett, M.G.1    Kaplan, K.B.2
  • 36
    • 37849007364 scopus 로고    scopus 로고
    • Structural and functional analysis of SGT1 reveals that its interaction with HSP90 is required for the accumulation of Rx, an R protein involved in plant immunity
    • Boter M, Amigues B, Peart J, Breuer C, Kadota Y, et al. (2007) Structural and functional analysis of SGT1 reveals that its interaction with HSP90 is required for the accumulation of Rx, an R protein involved in plant immunity. Plant Cell 19: 3791-3804.
    • (2007) Plant Cell , vol.19 , pp. 3791-3804
    • Boter, M.1    Amigues, B.2    Peart, J.3    Breuer, C.4    Kadota, Y.5
  • 37
    • 57049133465 scopus 로고    scopus 로고
    • Structural and functional analysis of SGT1-HSP90 core complex required for innate immunity in plants
    • Kadota Y, Amigues B, Ducassou L, Madaoui H, Ochsenbein F, et al. (2008) Structural and functional analysis of SGT1-HSP90 core complex required for innate immunity in plants. EMBO Rep 9: 1209-1215.
    • (2008) EMBO Rep , vol.9 , pp. 1209-1215
    • Kadota, Y.1    Amigues, B.2    Ducassou, L.3    Madaoui, H.4    Ochsenbein, F.5
  • 38
    • 54349122449 scopus 로고    scopus 로고
    • Structural and functional coupling of Hsp90- and Sgt1-centred multi-protein complexes
    • Zhang M, Botër M, Li K, Kadota Y, Panaretou B, et al. (2008) Structural and functional coupling of Hsp90- and Sgt1-centred multi-protein complexes. EMBO J 27: 2789-2798.
    • (2008) EMBO J , vol.27 , pp. 2789-2798
    • Zhang, M.1    Botër, M.2    Li, K.3    Kadota, Y.4    Panaretou, B.5
  • 39
    • 66449115640 scopus 로고    scopus 로고
    • The HSP90-SGT1 chaperone complex for NLR immune sensors
    • Shirasu K (2009) The HSP90-SGT1 chaperone complex for NLR immune sensors. Annu Rev Plant Biol 60: 139-146.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 139-146
    • Shirasu, K.1
  • 40
    • 77955480981 scopus 로고    scopus 로고
    • Structural basis for assembly of Hsp90-Sgt1-CHORD protein complexes: Implications for chaperoning of NLR innate immunity receptors
    • Zhang M, Kadota Y, Prodromou C, Shirasu K, Pearl LH (2010) Structural basis for assembly of Hsp90-Sgt1-CHORD protein complexes: implications for chaperoning of NLR innate immunity receptors. Mol Cell 39: 269-281.
    • (2010) Mol Cell , vol.39 , pp. 269-281
    • Zhang, M.1    Kadota, Y.2    Prodromou, C.3    Shirasu, K.4    Pearl, L.H.5
  • 41
    • 77952938726 scopus 로고    scopus 로고
    • Global dynamics of proteins: Bridging between structure and function
    • Bahar I, Lezon TR, Yang LW, Eyal E (2010) Global dynamics of proteins: bridging between structure and function. Annu Rev Biophys 39: 23-42.
    • (2010) Annu Rev Biophys , vol.39 , pp. 23-42
    • Bahar, I.1    Lezon, T.R.2    Yang, L.W.3    Eyal, E.4
  • 42
    • 0345973041 scopus 로고    scopus 로고
    • Gaussian dynamics of folded proteins
    • Haliloglu T, Bahar I, Erman B (1997) Gaussian dynamics of folded proteins. Phys Rev Lett 79: 3090-3093.
    • (1997) Phys Rev Lett , vol.79 , pp. 3090-3093
    • Haliloglu, T.1    Bahar, I.2    Erman, B.3
  • 43
    • 33747829284 scopus 로고    scopus 로고
    • oGNM: Online computation of structural dynamics using the Gaussian Network Model
    • Yang LW, Rader AJ, Liu X, Jursa CJ, Chen SC, et al. (2006) oGNM: online computation of structural dynamics using the Gaussian Network Model. Nucleic Acids Res 34(Web Server issue): W24-W31.
    • (2006) Nucleic Acids Res , vol.34 , Issue.WEB SERVER ISSUE
    • Yang, L.W.1    Rader, A.J.2    Liu, X.3    Jursa, C.J.4    Chen, S.C.5
  • 44
    • 14844286108 scopus 로고    scopus 로고
    • Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes
    • Ma J (2005) Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes. Structure 13: 373-380.
    • (2005) Structure , vol.13 , pp. 373-380
    • Ma, J.1
  • 45
    • 25844431698 scopus 로고    scopus 로고
    • Coarse-grained normal mode analysis in structural biology
    • Bahar I, Rader AJ (2005) Coarse-grained normal mode analysis in structural biology. Curr Opin Struc Biol 15: 1-7.
    • (2005) Curr Opin Struc Biol , vol.15 , pp. 1-7
    • Bahar, I.1    Rader, A.J.2
  • 46
    • 0034029144 scopus 로고    scopus 로고
    • Proteins with similar architecture exhibit similar large-scale dynamic behavior
    • Keskin O, Jernigan RL, Bahar I (2000) Proteins with similar architecture exhibit similar large-scale dynamic behavior. Biophys J 78: 2093-2106.
    • (2000) Biophys J , vol.78 , pp. 2093-2106
    • Keskin, O.1    Jernigan, R.L.2    Bahar, I.3
  • 47
    • 34248159870 scopus 로고    scopus 로고
    • Thorough validation of protein normal mode analysis: A comparative study with essential dynamics
    • Rueda M, Chacón P, Orozco M (2007) Thorough validation of protein normal mode analysis: a comparative study with essential dynamics. Structure 15: 565-575.
    • (2007) Structure , vol.15 , pp. 565-575
    • Rueda, M.1    Chacón, P.2    Orozco, M.3
  • 48
    • 84867313359 scopus 로고    scopus 로고
    • Measuring and comparing structural fluctuation patterns in large protein datasets
    • Fuglebakk E, Echave J, Reuter N (2012) Measuring and comparing structural fluctuation patterns in large protein datasets. Bioinformatics 28: 2431-2440.
    • (2012) Bioinformatics , vol.28 , pp. 2431-2440
    • Fuglebakk, E.1    Echave, J.2    Reuter, N.3
  • 49
    • 45849120595 scopus 로고    scopus 로고
    • Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution
    • Colombo G, Morra G, Meli M, Verkhivker G (2008) Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution. Proc Natl Acad Sci USA 105: 7976-7981.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 7976-7981
    • Colombo, G.1    Morra, G.2    Meli, M.3    Verkhivker, G.4
  • 50
    • 63549104682 scopus 로고    scopus 로고
    • Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full length dimer
    • Morra G, Verkhivker G, Colombo (2009) Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full length dimer. PLoS Comput Biol 5: e1000323.
    • (2009) PLoS Comput Biol , vol.5
    • Morra, G.1    Verkhivker, G.2    Colombo3
  • 51
    • 74249085580 scopus 로고    scopus 로고
    • Structural and computational biology of the molecular chaperone Hsp90: From understanding molecular mechanisms to computer-based inhibitor design
    • Verkhivker GM, Dixit A, Morra G, Colombo G (2009) Structural and computational biology of the molecular chaperone Hsp90: from understanding molecular mechanisms to computer-based inhibitor design. Curr Top Med Chem 9: 1369-1385.
    • (2009) Curr Top Med Chem , vol.9 , pp. 1369-1385
    • Verkhivker, G.M.1    Dixit, A.2    Morra, G.3    Colombo, G.4
  • 52
    • 77956566842 scopus 로고    scopus 로고
    • Dynamics-based discovery of allosteric inhibitors: Selection of new ligands for the C-terminal domain of Hsp90
    • Morra G, Neves MAC, Plescia CJ, Tsutsumi S, Neckers L, et al. (2010) Dynamics-based discovery of allosteric inhibitors: Selection of new ligands for the C-terminal domain of Hsp90. J Chem Theory Comput 6: 2978-2989.
    • (2010) J Chem Theory Comput , vol.6 , pp. 2978-2989
    • Morra, G.1    Neves, M.A.C.2    Plescia, C.J.3    Tsutsumi, S.4    Neckers, L.5
  • 53
    • 78650727347 scopus 로고    scopus 로고
    • A systematic protocol for the characterization of Hsp90 modulators
    • Matts RL, Brandt GE, Lu Y, Dixit A, Mollapour M, et al. (2011) A systematic protocol for the characterization of Hsp90 modulators. Bioorg Med Chem 19: 684-692.
    • (2011) Bioorg Med Chem , vol.19 , pp. 684-692
    • Matts, R.L.1    Brandt, G.E.2    Lu, Y.3    Dixit, A.4    Mollapour, M.5
  • 55
    • 84862098170 scopus 로고    scopus 로고
    • Probing molecular mechanisms of the Hsp90 chaperone: Biophysical modeling identifies key regulators of functional dynamics
    • Dixit A, Verkhivker GM (2012) Probing molecular mechanisms of the Hsp90 chaperone: Biophysical modeling identifies key regulators of functional dynamics. PLoS One 7: e37605.
    • (2012) PLoS One , vol.7
    • Dixit, A.1    Verkhivker, G.M.2
  • 56
    • 84861005184 scopus 로고    scopus 로고
    • Corresponding functional dynamics across the Hsp90 Chaperone family: Insights from a multiscale analysis of MD simulations
    • Morra G, Potestio R, Micheletti C, Colombo G (2012) Corresponding functional dynamics across the Hsp90 Chaperone family: insights from a multiscale analysis of MD simulations. PLoS Comput Biol 8: e1002433.
    • (2012) PLoS Comput Biol , vol.8
    • Morra, G.1    Potestio, R.2    Micheletti, C.3    Colombo, G.4
  • 57
    • 84869481830 scopus 로고    scopus 로고
    • Force distribution reveals signal transduction in E. coli Hsp90
    • Seifert C, Gräter F (2012) Force distribution reveals signal transduction in E. coli Hsp90. Biophys J 103: 2195-2202.
    • (2012) Biophys J , vol.103 , pp. 2195-2202
    • Seifert, C.1    Gräter, F.2
  • 58
    • 84888606976 scopus 로고    scopus 로고
    • Differential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: A computational study
    • Blacklock K, Verkhivker G (2013) Differential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: A computational study. PLoS One 8: e71936.
    • (2013) PLoS One , vol.8
    • Blacklock, K.1    Verkhivker, G.2
  • 60
    • 0346057951 scopus 로고    scopus 로고
    • Small-world communication of residues and significance for protein dynamics
    • Atilgan A R, Akan P, Baysal C (2004) Small-world communication of residues and significance for protein dynamics. Biophys J 86: 85-91.
    • (2004) Biophys J , vol.86 , pp. 85-91
    • Atilgan, A.R.1    Akan, P.2    Baysal, C.3
  • 61
    • 40549084038 scopus 로고    scopus 로고
    • Contact rearrangements form coupled networks from local motions in allosteric proteins
    • Daily MD, Upadhyaya TJ, Gray JJ (2008) Contact rearrangements form coupled networks from local motions in allosteric proteins. Proteins 71: 455-66.
    • (2008) Proteins , vol.71 , pp. 455-466
    • Daily, M.D.1    Upadhyaya, T.J.2    Gray, J.J.3
  • 62
    • 61449101487 scopus 로고    scopus 로고
    • Allosteric communication occurs via networks of tertiary and quaternary motions in proteins
    • Daily MD, Gray JJ (2009) Allosteric communication occurs via networks of tertiary and quaternary motions in proteins. PLoS Comput Biol 5: e1000293.
    • (2009) PLoS Comput Biol , vol.5
    • Daily, M.D.1    Gray, J.J.2
  • 63
    • 35148894521 scopus 로고    scopus 로고
    • Predicting allosteric communication in myosin via a pathway of conserved residues
    • Tang S, Liao JC, Dunn AR, Altman RB, Spudich JA, et al. (2007) Predicting allosteric communication in myosin via a pathway of conserved residues. J Mol Biol 373: 1361-1373.
    • (2007) J Mol Biol , vol.373 , pp. 1361-1373
    • Tang, S.1    Liao, J.C.2    Dunn, A.R.3    Altman, R.B.4    Spudich, J.A.5
  • 64
    • 12944331889 scopus 로고    scopus 로고
    • Small-world network approach to identify key residues in protein-protein interaction
    • del Sol A, O'Meara P (2005) Small-world network approach to identify key residues in protein-protein interaction. Proteins 58: 672-682.
    • (2005) Proteins , vol.58 , pp. 672-682
    • Del Sol, A.1    O'Meara, P.2
  • 65
    • 17444396776 scopus 로고    scopus 로고
    • Topology of small-world networks of protein-protein complex structures
    • del Sol A, Fujihashi H, O'Meara P (2005) Topology of small-world networks of protein-protein complex structures. Bioinformatics 21: 1311-1315.
    • (2005) Bioinformatics , vol.21 , pp. 1311-1315
    • Del Sol, A.1    Fujihashi, H.2    O'Meara, P.3
  • 66
    • 33748207211 scopus 로고    scopus 로고
    • Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non-enzyme families
    • del Sol A, Fujihashi H, Amoros D, Nussinov R (2006) Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families. Protein Sci 15: 2120-2128.
    • (2006) Protein Sci , vol.15 , pp. 2120-2128
    • Del Sol, A.1    Fujihashi, H.2    Amoros, D.3    Nussinov, R.4
  • 67
    • 34249308113 scopus 로고    scopus 로고
    • How accurate and statistically robust are catalytic site predictions based on closeness centrality?
    • Chea E, Livesay DR (2007) How accurate and statistically robust are catalytic site predictions based on closeness centrality? BMC Bioinformatics 8: 153.
    • (2007) BMC Bioinformatics , vol.8 , pp. 153
    • Chea, E.1    Livesay, D.R.2
  • 68
    • 0029670994 scopus 로고    scopus 로고
    • Conserved residues and the mechanism of protein folding
    • Shakhnovich E, Abkevich V, Ptitsyn O (1996) Conserved residues and the mechanism of protein folding. Nature 379: 96-98.
    • (1996) Nature , vol.379 , pp. 96-98
    • Shakhnovich, E.1    Abkevich, V.2    Ptitsyn, O.3
  • 69
    • 0035252350 scopus 로고    scopus 로고
    • Three key residues form a critical contact network in a protein folding transition state
    • Vendruscolo M, Paci E, Dobson CM, Karplus M (2001) Three key residues form a critical contact network in a protein folding transition state. Nature 409: 641-645.
    • (2001) Nature , vol.409 , pp. 641-645
    • Vendruscolo, M.1    Paci, E.2    Dobson, C.M.3    Karplus, M.4
  • 74
    • 66449123352 scopus 로고    scopus 로고
    • Extracting the multiscale backbone of complex weighted networks
    • Serrano MA, Boguna M, Vespignani A (2009) Extracting the multiscale backbone of complex weighted networks. Proc Natl Acad Sci. USA. 106: 6483-6488.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 6483-6488
    • Serrano, M.A.1    Boguna, M.2    Vespignani, A.3
  • 75
    • 33750177351 scopus 로고
    • Centrality in social networks: Conceptual clarification
    • Freeman LC (1978) Centrality in social networks: conceptual clarification Soc Networks 1: 215-239.
    • (1978) Soc Networks , vol.1 , pp. 215-239
    • Freeman, L.C.1
  • 76
    • 0001492480 scopus 로고
    • Centrality in valued graphs: A measure of betweenness based on network flow
    • Freeman LC, Borgatti SP, White DR (1991) Centrality in valued graphs: a measure of betweenness based on network flow. Soc Networks, 13: 141-154.
    • (1991) Soc Networks , vol.13 , pp. 141-154
    • Freeman, L.C.1    Borgatti, S.P.2    White, D.R.3
  • 77
    • 32544439820 scopus 로고    scopus 로고
    • Robustness of centrality measures under conditions of imperfect data
    • Borgatti SP, Carley K, Krackhardt D (2006) Robustness of centrality measures under conditions of imperfect data. Soc Networks 28: 124-136.
    • (2006) Soc Networks , vol.28 , pp. 124-136
    • Borgatti, S.P.1    Carley, K.2    Krackhardt, D.3
  • 78
    • 0042635247 scopus 로고    scopus 로고
    • Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality
    • Newman MEJ (2001) Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality Phys Rev E 64: 016132.
    • (2001) Phys Rev E , vol.64 , pp. 016132
    • Newman, M.E.J.1
  • 79
    • 0035648637 scopus 로고    scopus 로고
    • A faster algorithm for betweenness centrality
    • Brandes U (2001) A faster algorithm for betweenness centrality. J Math Sociol 25: 163-177.
    • (2001) J Math Sociol , vol.25 , pp. 163-177
    • Brandes, U.1
  • 80
    • 28444453011 scopus 로고    scopus 로고
    • A network representation of protein structures: Implications for protein stability
    • Brinda KV, Vishveshwara S (2005) A network representation of protein structures: implications for protein stability. Biophys J 89: 4159-4170.
    • (2005) Biophys J , vol.89 , pp. 4159-4170
    • Brinda, K.V.1    Vishveshwara, S.2
  • 81
    • 35648944297 scopus 로고    scopus 로고
    • A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis
    • Ghosh A, Vishveshwara S (2007) A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis. Proc Natl Acad Sci USA 104: 15711-15716.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 15711-15716
    • Ghosh, A.1    Vishveshwara, S.2
  • 82
    • 55249123363 scopus 로고    scopus 로고
    • Variations in clique and community patterns in protein structures during allosteric communication: Investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes
    • Ghosh A, Vishveshwara S (2008) Variations in clique and community patterns in protein structures during allosteric communication: investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes. Biochemistry 47: 11398-11407.
    • (2008) Biochemistry , vol.47 , pp. 11398-11407
    • Ghosh, A.1    Vishveshwara, S.2
  • 83
    • 77949907106 scopus 로고    scopus 로고
    • Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks
    • Bhattacharyya M, Ghosh A, Hansia P, Vishveshwara S (2010) Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks. Proteins 78: 506-517.
    • (2010) Proteins , vol.78 , pp. 506-517
    • Bhattacharyya, M.1    Ghosh, A.2    Hansia, P.3    Vishveshwara, S.4
  • 84
    • 78649883885 scopus 로고    scopus 로고
    • Interaction energy based protein structure networks
    • Vijayabaskar MS, Vishveshwara S (2010) Interaction energy based protein structure networks. Biophys J 99: 3704-3715.
    • (2010) Biophys J , vol.99 , pp. 3704-3715
    • Vijayabaskar, M.S.1    Vishveshwara, S.2
  • 85
    • 77955346321 scopus 로고    scopus 로고
    • Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis
    • Bhattacharyya M, Vishveshwara S (2010) Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis. BMC Struct Biol 10: 27.
    • (2010) BMC Struct Biol , vol.10 , pp. 27
    • Bhattacharyya, M.1    Vishveshwara, S.2
  • 86
    • 79955670187 scopus 로고    scopus 로고
    • Network approach for capturing ligand-induced subtle global changes in protein structures
    • Sukhwal A, Bhattacharyya M, Vishveshwara S. (2011) Network approach for capturing ligand-induced subtle global changes in protein structures. Acta Crystallogr D Biol Crystallogr 67: 429-439.
    • (2011) Acta Crystallogr D Biol Crystallogr , vol.67 , pp. 429-439
    • Sukhwal, A.1    Bhattacharyya, M.2    Vishveshwara, S.3
  • 87
    • 79960284776 scopus 로고    scopus 로고
    • Probing the allosteric mechanism in pyrrolysyl-tRNA synthetase using energy-weighted network formalism
    • Bhattacharyya M, Vishveshwara S (2011) Probing the allosteric mechanism in pyrrolysyl-tRNA synthetase using energy-weighted network formalism. Biochemistry 50: 6225-6236.
    • (2011) Biochemistry , vol.50 , pp. 6225-6236
    • Bhattacharyya, M.1    Vishveshwara, S.2
  • 89
    • 80054804699 scopus 로고    scopus 로고
    • Allosteric communication in cysteinyl tRNA synthetase: A network of direct and indirect readout
    • Ghosh A, Sakaguchi R, Liu C, Vishveshwara S, Hou YM (2011) Allosteric communication in cysteinyl tRNA synthetase: a network of direct and indirect readout. J Biol Chem 286: 37721-37731.
    • (2011) J Biol Chem , vol.286 , pp. 37721-37731
    • Ghosh, A.1    Sakaguchi, R.2    Liu, C.3    Vishveshwara, S.4    Hou, Y.M.5
  • 90
    • 72949085966 scopus 로고    scopus 로고
    • Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks
    • Hansia P, Ghosh A, Vishveshwara S (2009) Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks. Mol Biosyst 5: 1860-1872.
    • (2009) Mol Biosyst , vol.5 , pp. 1860-1872
    • Hansia, P.1    Ghosh, A.2    Vishveshwara, S.3
  • 92
    • 84865063074 scopus 로고    scopus 로고
    • Exploring residue component contributions to dynamical network models of allostery
    • Vanwart AT, Eargle J, Luthey-Schulten Z, Amaro RE (2012) Exploring residue component contributions to dynamical network models of allostery. J Chem Theory Comput 8: 2949-2961.
    • (2012) J Chem Theory Comput , vol.8 , pp. 2949-2961
    • Vanwart, A.T.1    Eargle, J.2    Luthey-Schulten, Z.3    Amaro, R.E.4
  • 95
    • 84871034858 scopus 로고    scopus 로고
    • 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization
    • Bhattacharya D, Cheng J. (2013) 3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization. Proteins 81: 119-131.
    • (2013) Proteins , vol.81 , pp. 119-131
    • Bhattacharya, D.1    Cheng, J.2
  • 96
    • 33646200456 scopus 로고    scopus 로고
    • Investigating the local flexibility of functional residues in hemoproteins
    • Sacquin-Mora S, Lavery R (2006) Investigating the local flexibility of functional residues in hemoproteins. Biophys J 90: 2706-2717.
    • (2006) Biophys J , vol.90 , pp. 2706-2717
    • Sacquin-Mora, S.1    Lavery, R.2
  • 97
    • 0032443390 scopus 로고    scopus 로고
    • Discrete molecular dynamics studies of the folding of a protein-like model
    • Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich EI (1998) Discrete molecular dynamics studies of the folding of a protein-like model. Fold Des. 3: 577-587.
    • (1998) Fold des , vol.3 , pp. 577-587
    • Dokholyan, N.V.1    Buldyrev, S.V.2    Stanley, H.E.3    Shakhnovich, E.I.4
  • 98
    • 51649113464 scopus 로고    scopus 로고
    • Exploring the suitability of coarse-grained techniques for the representation of protein dynamics
    • Emperador A, Carrillo O, Rueda M, Orozco M (2008) Exploring the suitability of coarse-grained techniques for the representation of protein dynamics. Biophys J 95: 2127-2138.
    • (2008) Biophys J , vol.95 , pp. 2127-2138
    • Emperador, A.1    Carrillo, O.2    Rueda, M.3    Orozco, M.4
  • 99
    • 77949346997 scopus 로고    scopus 로고
    • Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials
    • Emperador A, Meyer T, Orozco M (2010) Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials. Proteins 78: 83-94.
    • (2010) Proteins , vol.78 , pp. 83-94
    • Emperador, A.1    Meyer, T.2    Orozco, M.3
  • 100
    • 67649236681 scopus 로고    scopus 로고
    • FlexServ: An integrated tool for the analysis of protein flexibility
    • Camps J, Carrillo O, Emperador A, Orellana L, Hospital A, et al. (2009) FlexServ: an integrated tool for the analysis of protein flexibility. Bioinformatics 25: 1709-1710.
    • (2009) Bioinformatics , vol.25 , pp. 1709-1710
    • Camps, J.1    Carrillo, O.2    Emperador, A.3    Orellana, L.4    Hospital, A.5
  • 101
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts DJ, Strogatz SH (1998) Collective dynamics of 'small-world' networks. Nature 393: 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 102
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabási AL, Albert R (1999) Emergence of scaling in random networks. Science 286: 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabási, A.L.1    Albert, R.2
  • 104
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla G, Derényi I, Farkas I, Vicsek T (2005) Uncovering the overlapping community structure of complex networks in nature and society. Nature 435: 814-818.
    • (2005) Nature , vol.435 , pp. 814-818
    • Palla, G.1    Derényi, I.2    Farkas, I.3    Vicsek, T.4
  • 105
    • 77954219912 scopus 로고    scopus 로고
    • Split Renilla luciferase protein fragment-assisted complementation (SRL-PFAC) to characterize Hsp90-Cdc37 complex and identify critical residues in protein/protein interactions
    • Jiang Y, Bernard D, Yu Y, Xie Y, Zhang T, et al. (2010) Split Renilla luciferase protein fragment-assisted complementation (SRL-PFAC) to characterize Hsp90-Cdc37 complex and identify critical residues in protein/protein interactions. J Biol Chem 285: 21023-21036.
    • (2010) J Biol Chem , vol.285 , pp. 21023-21036
    • Jiang, Y.1    Bernard, D.2    Yu, Y.3    Xie, Y.4    Zhang, T.5
  • 106
    • 18744389789 scopus 로고    scopus 로고
    • Assortative mixing in networks
    • Newman ME (2002) Assortative mixing in networks. Phys Rev Lett 89: 208701.
    • (2002) Phys Rev Lett , vol.89 , pp. 208701
    • Newman, M.E.1
  • 109
    • 34547909602 scopus 로고    scopus 로고
    • Assortative mixing in protein contact networks and protein folding kinetics
    • Bagler G, Sinha S (2007) Assortative mixing in protein contact networks and protein folding kinetics. Bioinformatics 23: 1760-1767.
    • (2007) Bioinformatics , vol.23 , pp. 1760-1767
    • Bagler, G.1    Sinha, S.2
  • 110
    • 34447270231 scopus 로고    scopus 로고
    • Hydrophobic, hydrophilic, and charged amino acid networks within protein
    • Aftabuddin M, Kundu S (2007) Hydrophobic, hydrophilic, and charged amino acid networks within protein. Biophys J 93: 225-231.
    • (2007) Biophys J , vol.93 , pp. 225-231
    • Aftabuddin, M.1    Kundu, S.2
  • 111
    • 67749140118 scopus 로고    scopus 로고
    • Scale-free networks: A decade and beyond
    • Barabási AL (2009)Scale-free networks: a decade and beyond. Science 325: 412-413.
    • (2009) Science , vol.325 , pp. 412-413
    • Barabási, A.L.1
  • 113
    • 0346057951 scopus 로고    scopus 로고
    • Small-world communication of residues and significance for protein dynamics
    • Atilgan AR, Akan P, Baysal C (2004) Small-world communication of residues and significance for protein dynamics. Biophys J 86: 85-91.
    • (2004) Biophys J , vol.86 , pp. 85-91
    • Atilgan, A.R.1    Akan, P.2    Baysal, C.3
  • 114
    • 9944223645 scopus 로고    scopus 로고
    • Network properties of protein structures
    • Bagler G, Sinha S (2005) Network properties of protein structures. Physica A, 346: 27-33.
    • (2005) Physica A , vol.346 , pp. 27-33
    • Bagler, G.1    Sinha, S.2
  • 116
    • 84870328990 scopus 로고    scopus 로고
    • Rigidity and flexibility of biological networks
    • Gáspár ME, Csermely P (2012) Rigidity and flexibility of biological networks. Brief Funct Genomics 11: 443-456.
    • (2012) Brief Funct Genomics , vol.11 , pp. 443-456
    • Gáspár, M.E.1    Csermely, P.2
  • 117
    • 84857131975 scopus 로고    scopus 로고
    • Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function: Hypotheses and a comprehensive review
    • Csermely P, Sandhu KS, Hazai E, Hoksza Z, Kiss HJ, et al. (2012) Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function: hypotheses and a comprehensive review. Curr Protein Pept Sci 13: 19-33.
    • (2012) Curr Protein Pept Sci , vol.13 , pp. 19-33
    • Csermely, P.1    Sandhu, K.S.2    Hazai, E.3    Hoksza, Z.4    Kiss, H.J.5
  • 118
    • 84865695733 scopus 로고    scopus 로고
    • Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition
    • Taipale M, Krykbaeva I, Koeva M, Kayatekin C, Westover KD et al. (2012) Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition. Cell 150: 987-1001.
    • (2012) Cell , vol.150 , pp. 987-1001
    • Taipale, M.1    Krykbaeva, I.2    Koeva, M.3    Kayatekin, C.4    Westover, K.D.5
  • 119
    • 84880307149 scopus 로고    scopus 로고
    • Chaperones as thermodynamic sensors of drug-target interactions reveal kinase inhibitor specificities in living cells
    • Taipale M, Krykbaeva I, Whitesell L, Santagata S, Zhang J, et al. (2013) Chaperones as thermodynamic sensors of drug-target interactions reveal kinase inhibitor specificities in living cells. Nat Biotechnol 31: 630-637.
    • (2013) Nat Biotechnol , vol.31 , pp. 630-637
    • Taipale, M.1    Krykbaeva, I.2    Whitesell, L.3    Santagata, S.4    Zhang, J.5
  • 120
    • 84857943078 scopus 로고    scopus 로고
    • Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response
    • M111.014654
    • Sharma K, Vabulas RM, Macek B, Pinkert S, Cox J et al. (2012) Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response. Mol Cell Proteomics 11:M111.014654.
    • (2012) Mol Cell Proteomics , vol.11
    • Sharma, K.1    Vabulas, R.M.2    Macek, B.3    Pinkert, S.4    Cox, J.5
  • 121
    • 84862323158 scopus 로고    scopus 로고
    • Systematic identification of the HSP90 candidate regulated proteome
    • M111.016675
    • Wu Z, Moghaddas Gholami A, Kuster B (2012) Systematic identification of the HSP90 candidate regulated proteome. Mol Cell Proteomics 11:M111.016675.
    • (2012) Mol Cell Proteomics , vol.11
    • Wu, Z.1    Moghaddas Gholami, A.2    Kuster, B.3
  • 122
    • 25444528449 scopus 로고    scopus 로고
    • WEBnm@: A web application for normal mode analyses of proteins
    • Hollup SM, Salensminde G, Reuter N (2005) WEBnm@: a web application for normal mode analyses of proteins. BMC Bioinformatics 6: 52.
    • (2005) BMC Bioinformatics , vol.6 , pp. 52
    • Hollup, S.M.1    Salensminde, G.2    Reuter, N.3
  • 123
    • 0032533790 scopus 로고    scopus 로고
    • Analysis of domain motions by approximate normal mode calculations
    • Hinsen K (1998) Analysis of domain motions by approximate normal mode calculations. Proteins 33: 417-429.
    • (1998) Proteins , vol.33 , pp. 417-429
    • Hinsen, K.1
  • 124
    • 67249148362 scopus 로고    scopus 로고
    • Exploring network structure, dynamics, and function using Networkx
    • eds Varoquaux G, Vaught T, Millman J (Pasadena, CA) Available at Accessed January 12, 2011
    • Hagberg AA, Schult DA, Swart PJ (2008) Exploring network structure, dynamics, and function using Networkx. Proceedings of the 7th Python in Science Conference (SciPy2008), eds Varoquaux G, Vaught T, Millman J (Pasadena, CA) 11-15. Available at http://conference.scipy.org/proceedings/scipy2008/paper-2/. Accessed January 12, 2011.
    • (2008) Proceedings of the 7th Python in Science Conference (SciPy2008) , pp. 11-15
    • Hagberg, A.A.1    Schult, D.A.2    Swart, P.J.3


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