-
1
-
-
0035718899
-
Structure, function, and mechanism of the Hsp90 molecular chaperone
-
Pearl LH, Prodromou C (2001) Structure, function, and mechanism of the Hsp90 molecular chaperone. Adv Protein Chem 59: 157-186.
-
(2001)
Adv Protein Chem
, vol.59
, pp. 157-186
-
-
Pearl, L.H.1
Prodromou, C.2
-
2
-
-
20044382800
-
Navigating the chaperone network: An integrative map of physical and genetic interactions mediated by the hsp90 chaperone
-
Zhao R, Davey M, Hsu YC, Kaplanek P, Tong A, et al. (2005) Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone. Cell 120: 715-727.
-
(2005)
Cell
, vol.120
, pp. 715-727
-
-
Zhao, R.1
Davey, M.2
Hsu, Y.C.3
Kaplanek, P.4
Tong, A.5
-
3
-
-
34848926209
-
Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches
-
McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, et al. (2007) Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell 131: 121-135.
-
(2007)
Cell
, vol.131
, pp. 121-135
-
-
McClellan, A.J.1
Xia, Y.2
Deutschbauer, A.M.3
Davis, R.W.4
Gerstein, M.5
-
4
-
-
84934439633
-
Molecular interaction network of the Hsp90 chaperone system
-
Zhao R, Houry WA (2007) Molecular interaction network of the Hsp90 chaperone system. Adv Exp Med Biol 594: 27-36.
-
(2007)
Adv Exp Med Biol
, vol.594
, pp. 27-36
-
-
Zhao, R.1
Houry, W.A.2
-
5
-
-
77953916528
-
Hsp90 at the hub of protein homeostasis: Emerging mechanistic insights
-
Taipale M, Jarosz DF, Lindquist S (2010) Hsp90 at the hub of protein homeostasis: emerging mechanistic insights. Nat Rev Mol Cell Biol 11: 515-528.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 515-528
-
-
Taipale, M.1
Jarosz, D.F.2
Lindquist, S.3
-
6
-
-
84865695733
-
Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition
-
Taipale M, Krykbaeva I, Koeva M, Kayatekin C, Westover KD, et al. (2012) Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition. Cell 150: 987-1001.
-
(2012)
Cell
, vol.150
, pp. 987-1001
-
-
Taipale, M.1
Krykbaeva, I.2
Koeva, M.3
Kayatekin, C.4
Westover, K.D.5
-
7
-
-
33646176246
-
Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex
-
Ali MM, Roe SM, Vaughan CK, Meyer P, Panaretou B, et al. (2006) Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex. Nature 440: 1013-1017.
-
(2006)
Nature
, vol.440
, pp. 1013-1017
-
-
Ali, M.M.1
Roe, S.M.2
Vaughan, C.K.3
Meyer, P.4
Panaretou, B.5
-
8
-
-
33750008686
-
Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements
-
Shiau AK, Harris SF, Southworth DR, Agard DA (2006) Structural Analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements. Cell 127: 329-340.
-
(2006)
Cell
, vol.127
, pp. 329-340
-
-
Shiau, A.K.1
Harris, S.F.2
Southworth, D.R.3
Agard, D.A.4
-
9
-
-
34948893963
-
Structures of GRP94-nucleotide complexes reveal mechanistic differences between the hsp90 chaperones
-
Dollins DE, Warren JJ, Immormino RM, Gewirth DT (2007) Structures of GRP94-nucleotide complexes reveal mechanistic differences between the hsp90 chaperones. Mol Cell 28: 41-56.
-
(2007)
Mol Cell
, vol.28
, pp. 41-56
-
-
Dollins, D.E.1
Warren, J.J.2
Immormino, R.M.3
Gewirth, D.T.4
-
10
-
-
33746364784
-
Structure and mechanism of the Hsp90 molecular chaperone machinery
-
Pearl LH, Prodromou C (2006) Structure and mechanism of the Hsp90 molecular chaperone machinery. Annu Rev Biochem 75: 271-294.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 271-294
-
-
Pearl, L.H.1
Prodromou, C.2
-
12
-
-
84874506372
-
Hsp90: Structure and function
-
Jackson SE (2013) Hsp90: structure and function. Top Curr Chem 328: 155-240.
-
(2013)
Top Curr Chem
, vol.328
, pp. 155-240
-
-
Jackson, S.E.1
-
13
-
-
84881218748
-
Structure, function and regulation of the hsp90 machinery
-
Li J, Buchner J (2013) Structure, function and regulation of the hsp90 machinery. Biomed J 36: 106-117.
-
(2013)
Biomed J
, vol.36
, pp. 106-117
-
-
Li, J.1
Buchner, J.2
-
14
-
-
61949212626
-
The large conformational changes of Hsp90 are only weakly coupled to ATP hydrolysis
-
Mickler M, Hessling M, Ratzke C, Buchner J, Hugel T (2009) The large conformational changes of Hsp90 are only weakly coupled to ATP hydrolysis. Nat Struct Mol Biol 16: 281-286.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 281-286
-
-
Mickler, M.1
Hessling, M.2
Ratzke, C.3
Buchner, J.4
Hugel, T.5
-
15
-
-
84867051420
-
From a ratchet mechanism to random fluctuations evolution of Hsp90's mechanochemical cycle
-
Ratzke C, Nguyen MN, Mayer MP, Hugel T (2012) From a ratchet mechanism to random fluctuations evolution of Hsp90's mechanochemical cycle. J Mol Biol 423: 462-471.
-
(2012)
J Mol Biol
, vol.423
, pp. 462-471
-
-
Ratzke, C.1
Nguyen, M.N.2
Mayer, M.P.3
Hugel, T.4
-
16
-
-
84857051938
-
The 'active life' of Hsp90 complexes
-
Prodromou C (2012) The 'active life' of Hsp90 complexes. Biochim Biophys Acta 1823: 614-623.
-
(2012)
Biochim Biophys Acta
, vol.1823
, pp. 614-623
-
-
Prodromou, C.1
-
17
-
-
84857042271
-
The Hsp90 chaperone machinery: Conformational dynamics and regulation by cochaperones
-
Li J, Soroka J, Buchner J (2012) The Hsp90 chaperone machinery: conformational dynamics and regulation by cochaperones. Biochim Biophys Acta 1823: 624-635.
-
(2012)
Biochim Biophys Acta
, vol.1823
, pp. 624-635
-
-
Li, J.1
Soroka, J.2
Buchner, J.3
-
18
-
-
84857053558
-
The role of Hsp90 in protein complex assembly
-
Makhnevych T, Houry WA (2012) The role of Hsp90 in protein complex assembly. Biochim Biophys Acta 1823: 674-682.
-
(2012)
Biochim Biophys Acta
, vol.1823
, pp. 674-682
-
-
Makhnevych, T.1
Houry, W.A.2
-
19
-
-
84876707777
-
The chaperone Hsp90: Changing partners for demanding clients
-
Röhl A, Rohrberg J, Buchner J (2013) The chaperone Hsp90: changing partners for demanding clients. Trends Biochem Sci 38: 253-262.
-
(2013)
Trends Biochem Sci
, vol.38
, pp. 253-262
-
-
Röhl, A.1
Rohrberg, J.2
Buchner, J.3
-
20
-
-
33846588436
-
Cdc37 has distinct roles in protein kinase quality control that protect nascent chains from degradation and promote posttranslational maturation
-
Mandal AK, Lee P, Chen JA, Nillegoda N, Heller A, et al. (2007) Cdc37 has distinct roles in protein kinase quality control that protect nascent chains from degradation and promote posttranslational maturation. J Cell Biol 176: 319-328.
-
(2007)
J Cell Biol
, vol.176
, pp. 319-328
-
-
Mandal, A.K.1
Lee, P.2
Chen, J.A.3
Nillegoda, N.4
Heller, A.5
-
22
-
-
0037036458
-
Regulation of Hsp90 ATPase activity by the co-chaperone Cdc37p/p50cdc37
-
Siligardi G, Panaretou B, Meyer P, Singh S, Woolfson DN, et al. (2002) Regulation of Hsp90 ATPase activity by the co-chaperone Cdc37p/p50cdc37. J Biol Chem 277: 20151-20159.
-
(2002)
J Biol Chem
, vol.277
, pp. 20151-20159
-
-
Siligardi, G.1
Panaretou, B.2
Meyer, P.3
Singh, S.4
Woolfson, D.N.5
-
23
-
-
0742269688
-
The mechanism of Hsp90 regulation by the protein kinase-specific cochaperone p50(cdc37)
-
Roe SM, Ali MMU, Meyer P, Vaughan CK, Panaretou B, et al. (2004) The mechanism of Hsp90 regulation by the protein kinase-specific cochaperone p50(cdc37). Cell 116: 87-98.
-
(2004)
Cell
, vol.116
, pp. 87-98
-
-
Roe, S.M.1
Ali, M.M.U.2
Meyer, P.3
Vaughan, C.K.4
Panaretou, B.5
-
24
-
-
3042598511
-
Biochemical and structural studies of the interaction of Cdc37 with Hsp90
-
Zhang W, Hirshberg M, McLaughlin SH, Lazar GA, Grossmann JG, et al. (2004) Biochemical and structural studies of the interaction of Cdc37 with Hsp90. J Mol Biol 340: 891-907.
-
(2004)
J Mol Biol
, vol.340
, pp. 891-907
-
-
Zhang, W.1
Hirshberg, M.2
McLaughlin, S.H.3
Lazar, G.A.4
Grossmann, J.G.5
-
25
-
-
63549083573
-
The human Cdc37.Hsp90 complex studied by heteronuclear NMR spectroscopy
-
Sreeramulu S, Jonker HR, Langer T, Richter C, Lancaster CR, et al. (2009) The human Cdc37.Hsp90 complex studied by heteronuclear NMR spectroscopy. J Biol Chem 284: 3885-3896.
-
(2009)
J Biol Chem
, vol.284
, pp. 3885-3896
-
-
Sreeramulu, S.1
Jonker, H.R.2
Langer, T.3
Richter, C.4
Lancaster, C.R.5
-
26
-
-
0032724487
-
A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans
-
Shirasu K, Lahaye T, Tan MW, Zhou F, Azevedo C, et al. (1999) A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans. Cell 99: 355-366.
-
(1999)
Cell
, vol.99
, pp. 355-366
-
-
Shirasu, K.1
Lahaye, T.2
Tan, M.W.3
Zhou, F.4
Azevedo, C.5
-
27
-
-
0037086007
-
The RAR1 interactor SGT1, an essential component of R gene-triggered disease resistance
-
Azevedo C, Sadanandom A, Kitagawa K, Freialdenhoven A, Shirasu K, et al. (2002) The RAR1 interactor SGT1, an essential component of R gene-triggered disease resistance. Science 295: 2073-2076.
-
(2002)
Science
, vol.295
, pp. 2073-2076
-
-
Azevedo, C.1
Sadanandom, A.2
Kitagawa, K.3
Freialdenhoven, A.4
Shirasu, K.5
-
28
-
-
0141705339
-
HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis
-
Takahashi A, Casais C, Ichimura K, Shirasu K (2003) HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis. Proc Natl Acad Sci USA 100: 11777-11782.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11777-11782
-
-
Takahashi, A.1
Casais, C.2
Ichimura, K.3
Shirasu, K.4
-
29
-
-
0242556837
-
Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease resistance protein
-
Hubert DA, Tornero P, Belkhadir Y, Krishna P, Takahashi A, et al. (2003) Cytosolic HSP90 associates with and modulates the Arabidopsis RPM1 disease resistance protein, EMBO J 22: 5679-5689.
-
(2003)
EMBO J
, vol.22
, pp. 5679-5689
-
-
Hubert, D.A.1
Tornero, P.2
Belkhadir, Y.3
Krishna, P.4
Takahashi, A.5
-
30
-
-
67649858826
-
Specific Arabidopsis HSP90.2 alleles recapitulate RAR1 cochaperone function in plant NB-LRR disease resistance protein regulation
-
Hubert DA, He Y, McNulty BC, Tornero P, Dangl JL (2009) Specific Arabidopsis HSP90.2 alleles recapitulate RAR1 cochaperone function in plant NB-LRR disease resistance protein regulation. Proc Natl Acad Sci USA 106: 9556-9563.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9556-9563
-
-
Hubert, D.A.1
He, Y.2
McNulty, B.C.3
Tornero, P.4
Dangl, J.L.5
-
33
-
-
0037086347
-
Regulatory role of SGT1 in early R gene-mediated plant defenses
-
Austin MJ, Muskett P, Kahn K, Feys BJ, Jones JD, et al. (2002) Regulatory role of SGT1 in early R gene-mediated plant defenses. Science 295: 2077-2080.
-
(2002)
Science
, vol.295
, pp. 2077-2080
-
-
Austin, M.J.1
Muskett, P.2
Kahn, K.3
Feys, B.J.4
Jones, J.D.5
-
34
-
-
1942436961
-
Human Sgt1 binds HSP90 through the CHORD-Sgt1 domain and not the tetratricopeptide repeat domain
-
Lee YT, Jacob J, Michowski W, Nowotny M, Kuznicki J et al. (2004) Human Sgt1 binds HSP90 through the CHORD-Sgt1 domain and not the tetratricopeptide repeat domain. J Biol Chem 279: 16511-16517.
-
(2004)
J Biol Chem
, vol.279
, pp. 16511-16517
-
-
Lee, Y.T.1
Jacob, J.2
Michowski, W.3
Nowotny, M.4
Kuznicki, J.5
-
35
-
-
33845959149
-
Sgt1p is a unique co-chaperone that acts as a client adaptor to link Hsp90 to Skp1p
-
Catlett MG, Kaplan KB (2006) Sgt1p is a unique co-chaperone that acts as a client adaptor to link Hsp90 to Skp1p. J Biol Chem 281: 33739-33748.
-
(2006)
J Biol Chem
, vol.281
, pp. 33739-33748
-
-
Catlett, M.G.1
Kaplan, K.B.2
-
36
-
-
37849007364
-
Structural and functional analysis of SGT1 reveals that its interaction with HSP90 is required for the accumulation of Rx, an R protein involved in plant immunity
-
Boter M, Amigues B, Peart J, Breuer C, Kadota Y, et al. (2007) Structural and functional analysis of SGT1 reveals that its interaction with HSP90 is required for the accumulation of Rx, an R protein involved in plant immunity. Plant Cell 19: 3791-3804.
-
(2007)
Plant Cell
, vol.19
, pp. 3791-3804
-
-
Boter, M.1
Amigues, B.2
Peart, J.3
Breuer, C.4
Kadota, Y.5
-
37
-
-
57049133465
-
Structural and functional analysis of SGT1-HSP90 core complex required for innate immunity in plants
-
Kadota Y, Amigues B, Ducassou L, Madaoui H, Ochsenbein F, et al. (2008) Structural and functional analysis of SGT1-HSP90 core complex required for innate immunity in plants. EMBO Rep 9: 1209-1215.
-
(2008)
EMBO Rep
, vol.9
, pp. 1209-1215
-
-
Kadota, Y.1
Amigues, B.2
Ducassou, L.3
Madaoui, H.4
Ochsenbein, F.5
-
38
-
-
54349122449
-
Structural and functional coupling of Hsp90- and Sgt1-centred multi-protein complexes
-
Zhang M, Botër M, Li K, Kadota Y, Panaretou B, et al. (2008) Structural and functional coupling of Hsp90- and Sgt1-centred multi-protein complexes. EMBO J 27: 2789-2798.
-
(2008)
EMBO J
, vol.27
, pp. 2789-2798
-
-
Zhang, M.1
Botër, M.2
Li, K.3
Kadota, Y.4
Panaretou, B.5
-
39
-
-
66449115640
-
The HSP90-SGT1 chaperone complex for NLR immune sensors
-
Shirasu K (2009) The HSP90-SGT1 chaperone complex for NLR immune sensors. Annu Rev Plant Biol 60: 139-146.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 139-146
-
-
Shirasu, K.1
-
40
-
-
77955480981
-
Structural basis for assembly of Hsp90-Sgt1-CHORD protein complexes: Implications for chaperoning of NLR innate immunity receptors
-
Zhang M, Kadota Y, Prodromou C, Shirasu K, Pearl LH (2010) Structural basis for assembly of Hsp90-Sgt1-CHORD protein complexes: implications for chaperoning of NLR innate immunity receptors. Mol Cell 39: 269-281.
-
(2010)
Mol Cell
, vol.39
, pp. 269-281
-
-
Zhang, M.1
Kadota, Y.2
Prodromou, C.3
Shirasu, K.4
Pearl, L.H.5
-
41
-
-
77952938726
-
Global dynamics of proteins: Bridging between structure and function
-
Bahar I, Lezon TR, Yang LW, Eyal E (2010) Global dynamics of proteins: bridging between structure and function. Annu Rev Biophys 39: 23-42.
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 23-42
-
-
Bahar, I.1
Lezon, T.R.2
Yang, L.W.3
Eyal, E.4
-
43
-
-
33747829284
-
oGNM: Online computation of structural dynamics using the Gaussian Network Model
-
Yang LW, Rader AJ, Liu X, Jursa CJ, Chen SC, et al. (2006) oGNM: online computation of structural dynamics using the Gaussian Network Model. Nucleic Acids Res 34(Web Server issue): W24-W31.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.WEB SERVER ISSUE
-
-
Yang, L.W.1
Rader, A.J.2
Liu, X.3
Jursa, C.J.4
Chen, S.C.5
-
44
-
-
14844286108
-
Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes
-
Ma J (2005) Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes. Structure 13: 373-380.
-
(2005)
Structure
, vol.13
, pp. 373-380
-
-
Ma, J.1
-
45
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
Bahar I, Rader AJ (2005) Coarse-grained normal mode analysis in structural biology. Curr Opin Struc Biol 15: 1-7.
-
(2005)
Curr Opin Struc Biol
, vol.15
, pp. 1-7
-
-
Bahar, I.1
Rader, A.J.2
-
46
-
-
0034029144
-
Proteins with similar architecture exhibit similar large-scale dynamic behavior
-
Keskin O, Jernigan RL, Bahar I (2000) Proteins with similar architecture exhibit similar large-scale dynamic behavior. Biophys J 78: 2093-2106.
-
(2000)
Biophys J
, vol.78
, pp. 2093-2106
-
-
Keskin, O.1
Jernigan, R.L.2
Bahar, I.3
-
47
-
-
34248159870
-
Thorough validation of protein normal mode analysis: A comparative study with essential dynamics
-
Rueda M, Chacón P, Orozco M (2007) Thorough validation of protein normal mode analysis: a comparative study with essential dynamics. Structure 15: 565-575.
-
(2007)
Structure
, vol.15
, pp. 565-575
-
-
Rueda, M.1
Chacón, P.2
Orozco, M.3
-
48
-
-
84867313359
-
Measuring and comparing structural fluctuation patterns in large protein datasets
-
Fuglebakk E, Echave J, Reuter N (2012) Measuring and comparing structural fluctuation patterns in large protein datasets. Bioinformatics 28: 2431-2440.
-
(2012)
Bioinformatics
, vol.28
, pp. 2431-2440
-
-
Fuglebakk, E.1
Echave, J.2
Reuter, N.3
-
49
-
-
45849120595
-
Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution
-
Colombo G, Morra G, Meli M, Verkhivker G (2008) Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution. Proc Natl Acad Sci USA 105: 7976-7981.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7976-7981
-
-
Colombo, G.1
Morra, G.2
Meli, M.3
Verkhivker, G.4
-
50
-
-
63549104682
-
Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full length dimer
-
Morra G, Verkhivker G, Colombo (2009) Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full length dimer. PLoS Comput Biol 5: e1000323.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Morra, G.1
Verkhivker, G.2
Colombo3
-
51
-
-
74249085580
-
Structural and computational biology of the molecular chaperone Hsp90: From understanding molecular mechanisms to computer-based inhibitor design
-
Verkhivker GM, Dixit A, Morra G, Colombo G (2009) Structural and computational biology of the molecular chaperone Hsp90: from understanding molecular mechanisms to computer-based inhibitor design. Curr Top Med Chem 9: 1369-1385.
-
(2009)
Curr Top Med Chem
, vol.9
, pp. 1369-1385
-
-
Verkhivker, G.M.1
Dixit, A.2
Morra, G.3
Colombo, G.4
-
52
-
-
77956566842
-
Dynamics-based discovery of allosteric inhibitors: Selection of new ligands for the C-terminal domain of Hsp90
-
Morra G, Neves MAC, Plescia CJ, Tsutsumi S, Neckers L, et al. (2010) Dynamics-based discovery of allosteric inhibitors: Selection of new ligands for the C-terminal domain of Hsp90. J Chem Theory Comput 6: 2978-2989.
-
(2010)
J Chem Theory Comput
, vol.6
, pp. 2978-2989
-
-
Morra, G.1
Neves, M.A.C.2
Plescia, C.J.3
Tsutsumi, S.4
Neckers, L.5
-
53
-
-
78650727347
-
A systematic protocol for the characterization of Hsp90 modulators
-
Matts RL, Brandt GE, Lu Y, Dixit A, Mollapour M, et al. (2011) A systematic protocol for the characterization of Hsp90 modulators. Bioorg Med Chem 19: 684-692.
-
(2011)
Bioorg Med Chem
, vol.19
, pp. 684-692
-
-
Matts, R.L.1
Brandt, G.E.2
Lu, Y.3
Dixit, A.4
Mollapour, M.5
-
54
-
-
80051982419
-
Elucidation of the Hsp90 C-terminal inhibitor binding site
-
Matts RL, Dixit A, Peterson LB, Sun L, Voruganti S, et al. (2011) Elucidation of the Hsp90 C-terminal inhibitor binding site. ACS Chem Biol 6: 800-807.
-
(2011)
ACS Chem Biol
, vol.6
, pp. 800-807
-
-
Matts, R.L.1
Dixit, A.2
Peterson, L.B.3
Sun, L.4
Voruganti, S.5
-
55
-
-
84862098170
-
Probing molecular mechanisms of the Hsp90 chaperone: Biophysical modeling identifies key regulators of functional dynamics
-
Dixit A, Verkhivker GM (2012) Probing molecular mechanisms of the Hsp90 chaperone: Biophysical modeling identifies key regulators of functional dynamics. PLoS One 7: e37605.
-
(2012)
PLoS One
, vol.7
-
-
Dixit, A.1
Verkhivker, G.M.2
-
56
-
-
84861005184
-
Corresponding functional dynamics across the Hsp90 Chaperone family: Insights from a multiscale analysis of MD simulations
-
Morra G, Potestio R, Micheletti C, Colombo G (2012) Corresponding functional dynamics across the Hsp90 Chaperone family: insights from a multiscale analysis of MD simulations. PLoS Comput Biol 8: e1002433.
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Morra, G.1
Potestio, R.2
Micheletti, C.3
Colombo, G.4
-
57
-
-
84869481830
-
Force distribution reveals signal transduction in E. coli Hsp90
-
Seifert C, Gräter F (2012) Force distribution reveals signal transduction in E. coli Hsp90. Biophys J 103: 2195-2202.
-
(2012)
Biophys J
, vol.103
, pp. 2195-2202
-
-
Seifert, C.1
Gräter, F.2
-
58
-
-
84888606976
-
Differential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: A computational study
-
Blacklock K, Verkhivker G (2013) Differential modulation of functional dynamics and allosteric interactions in the Hsp90-cochaperone complexes with p23 and Aha1: A computational study. PLoS One 8: e71936.
-
(2013)
PLoS One
, vol.8
-
-
Blacklock, K.1
Verkhivker, G.2
-
60
-
-
0346057951
-
Small-world communication of residues and significance for protein dynamics
-
Atilgan A R, Akan P, Baysal C (2004) Small-world communication of residues and significance for protein dynamics. Biophys J 86: 85-91.
-
(2004)
Biophys J
, vol.86
, pp. 85-91
-
-
Atilgan, A.R.1
Akan, P.2
Baysal, C.3
-
61
-
-
40549084038
-
Contact rearrangements form coupled networks from local motions in allosteric proteins
-
Daily MD, Upadhyaya TJ, Gray JJ (2008) Contact rearrangements form coupled networks from local motions in allosteric proteins. Proteins 71: 455-66.
-
(2008)
Proteins
, vol.71
, pp. 455-466
-
-
Daily, M.D.1
Upadhyaya, T.J.2
Gray, J.J.3
-
62
-
-
61449101487
-
Allosteric communication occurs via networks of tertiary and quaternary motions in proteins
-
Daily MD, Gray JJ (2009) Allosteric communication occurs via networks of tertiary and quaternary motions in proteins. PLoS Comput Biol 5: e1000293.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Daily, M.D.1
Gray, J.J.2
-
63
-
-
35148894521
-
Predicting allosteric communication in myosin via a pathway of conserved residues
-
Tang S, Liao JC, Dunn AR, Altman RB, Spudich JA, et al. (2007) Predicting allosteric communication in myosin via a pathway of conserved residues. J Mol Biol 373: 1361-1373.
-
(2007)
J Mol Biol
, vol.373
, pp. 1361-1373
-
-
Tang, S.1
Liao, J.C.2
Dunn, A.R.3
Altman, R.B.4
Spudich, J.A.5
-
64
-
-
12944331889
-
Small-world network approach to identify key residues in protein-protein interaction
-
del Sol A, O'Meara P (2005) Small-world network approach to identify key residues in protein-protein interaction. Proteins 58: 672-682.
-
(2005)
Proteins
, vol.58
, pp. 672-682
-
-
Del Sol, A.1
O'Meara, P.2
-
65
-
-
17444396776
-
Topology of small-world networks of protein-protein complex structures
-
del Sol A, Fujihashi H, O'Meara P (2005) Topology of small-world networks of protein-protein complex structures. Bioinformatics 21: 1311-1315.
-
(2005)
Bioinformatics
, vol.21
, pp. 1311-1315
-
-
Del Sol, A.1
Fujihashi, H.2
O'Meara, P.3
-
66
-
-
33748207211
-
Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non-enzyme families
-
del Sol A, Fujihashi H, Amoros D, Nussinov R (2006) Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families. Protein Sci 15: 2120-2128.
-
(2006)
Protein Sci
, vol.15
, pp. 2120-2128
-
-
Del Sol, A.1
Fujihashi, H.2
Amoros, D.3
Nussinov, R.4
-
67
-
-
34249308113
-
How accurate and statistically robust are catalytic site predictions based on closeness centrality?
-
Chea E, Livesay DR (2007) How accurate and statistically robust are catalytic site predictions based on closeness centrality? BMC Bioinformatics 8: 153.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 153
-
-
Chea, E.1
Livesay, D.R.2
-
68
-
-
0029670994
-
Conserved residues and the mechanism of protein folding
-
Shakhnovich E, Abkevich V, Ptitsyn O (1996) Conserved residues and the mechanism of protein folding. Nature 379: 96-98.
-
(1996)
Nature
, vol.379
, pp. 96-98
-
-
Shakhnovich, E.1
Abkevich, V.2
Ptitsyn, O.3
-
69
-
-
0035252350
-
Three key residues form a critical contact network in a protein folding transition state
-
Vendruscolo M, Paci E, Dobson CM, Karplus M (2001) Three key residues form a critical contact network in a protein folding transition state. Nature 409: 641-645.
-
(2001)
Nature
, vol.409
, pp. 641-645
-
-
Vendruscolo, M.1
Paci, E.2
Dobson, C.M.3
Karplus, M.4
-
71
-
-
34248185088
-
Construction and application of the weighted amino acid network based on energy
-
Jiao X, Chang S, Li CH, Chen WZ, Wang CX (2007) Construction and application of the weighted amino acid network based on energy. Phys Rev E Stat Nonlin Soft Matter Phys. 75: 051903.
-
(2007)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.75
, pp. 051903
-
-
Jiao, X.1
Chang, S.2
Li, C.H.3
Chen, W.Z.4
Wang, C.X.5
-
74
-
-
66449123352
-
Extracting the multiscale backbone of complex weighted networks
-
Serrano MA, Boguna M, Vespignani A (2009) Extracting the multiscale backbone of complex weighted networks. Proc Natl Acad Sci. USA. 106: 6483-6488.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 6483-6488
-
-
Serrano, M.A.1
Boguna, M.2
Vespignani, A.3
-
75
-
-
33750177351
-
Centrality in social networks: Conceptual clarification
-
Freeman LC (1978) Centrality in social networks: conceptual clarification Soc Networks 1: 215-239.
-
(1978)
Soc Networks
, vol.1
, pp. 215-239
-
-
Freeman, L.C.1
-
76
-
-
0001492480
-
Centrality in valued graphs: A measure of betweenness based on network flow
-
Freeman LC, Borgatti SP, White DR (1991) Centrality in valued graphs: a measure of betweenness based on network flow. Soc Networks, 13: 141-154.
-
(1991)
Soc Networks
, vol.13
, pp. 141-154
-
-
Freeman, L.C.1
Borgatti, S.P.2
White, D.R.3
-
77
-
-
32544439820
-
Robustness of centrality measures under conditions of imperfect data
-
Borgatti SP, Carley K, Krackhardt D (2006) Robustness of centrality measures under conditions of imperfect data. Soc Networks 28: 124-136.
-
(2006)
Soc Networks
, vol.28
, pp. 124-136
-
-
Borgatti, S.P.1
Carley, K.2
Krackhardt, D.3
-
78
-
-
0042635247
-
Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality
-
Newman MEJ (2001) Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality Phys Rev E 64: 016132.
-
(2001)
Phys Rev E
, vol.64
, pp. 016132
-
-
Newman, M.E.J.1
-
79
-
-
0035648637
-
A faster algorithm for betweenness centrality
-
Brandes U (2001) A faster algorithm for betweenness centrality. J Math Sociol 25: 163-177.
-
(2001)
J Math Sociol
, vol.25
, pp. 163-177
-
-
Brandes, U.1
-
80
-
-
28444453011
-
A network representation of protein structures: Implications for protein stability
-
Brinda KV, Vishveshwara S (2005) A network representation of protein structures: implications for protein stability. Biophys J 89: 4159-4170.
-
(2005)
Biophys J
, vol.89
, pp. 4159-4170
-
-
Brinda, K.V.1
Vishveshwara, S.2
-
81
-
-
35648944297
-
A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis
-
Ghosh A, Vishveshwara S (2007) A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis. Proc Natl Acad Sci USA 104: 15711-15716.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15711-15716
-
-
Ghosh, A.1
Vishveshwara, S.2
-
82
-
-
55249123363
-
Variations in clique and community patterns in protein structures during allosteric communication: Investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes
-
Ghosh A, Vishveshwara S (2008) Variations in clique and community patterns in protein structures during allosteric communication: investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes. Biochemistry 47: 11398-11407.
-
(2008)
Biochemistry
, vol.47
, pp. 11398-11407
-
-
Ghosh, A.1
Vishveshwara, S.2
-
83
-
-
77949907106
-
Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks
-
Bhattacharyya M, Ghosh A, Hansia P, Vishveshwara S (2010) Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks. Proteins 78: 506-517.
-
(2010)
Proteins
, vol.78
, pp. 506-517
-
-
Bhattacharyya, M.1
Ghosh, A.2
Hansia, P.3
Vishveshwara, S.4
-
84
-
-
78649883885
-
Interaction energy based protein structure networks
-
Vijayabaskar MS, Vishveshwara S (2010) Interaction energy based protein structure networks. Biophys J 99: 3704-3715.
-
(2010)
Biophys J
, vol.99
, pp. 3704-3715
-
-
Vijayabaskar, M.S.1
Vishveshwara, S.2
-
85
-
-
77955346321
-
Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis
-
Bhattacharyya M, Vishveshwara S (2010) Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis. BMC Struct Biol 10: 27.
-
(2010)
BMC Struct Biol
, vol.10
, pp. 27
-
-
Bhattacharyya, M.1
Vishveshwara, S.2
-
87
-
-
79960284776
-
Probing the allosteric mechanism in pyrrolysyl-tRNA synthetase using energy-weighted network formalism
-
Bhattacharyya M, Vishveshwara S (2011) Probing the allosteric mechanism in pyrrolysyl-tRNA synthetase using energy-weighted network formalism. Biochemistry 50: 6225-6236.
-
(2011)
Biochemistry
, vol.50
, pp. 6225-6236
-
-
Bhattacharyya, M.1
Vishveshwara, S.2
-
89
-
-
80054804699
-
Allosteric communication in cysteinyl tRNA synthetase: A network of direct and indirect readout
-
Ghosh A, Sakaguchi R, Liu C, Vishveshwara S, Hou YM (2011) Allosteric communication in cysteinyl tRNA synthetase: a network of direct and indirect readout. J Biol Chem 286: 37721-37731.
-
(2011)
J Biol Chem
, vol.286
, pp. 37721-37731
-
-
Ghosh, A.1
Sakaguchi, R.2
Liu, C.3
Vishveshwara, S.4
Hou, Y.M.5
-
90
-
-
72949085966
-
Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks
-
Hansia P, Ghosh A, Vishveshwara S (2009) Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks. Mol Biosyst 5: 1860-1872.
-
(2009)
Mol Biosyst
, vol.5
, pp. 1860-1872
-
-
Hansia, P.1
Ghosh, A.2
Vishveshwara, S.3
-
91
-
-
84861889672
-
Allosteric pathways in imidazole glycerol phosphate synthase
-
Rivalta I, Sultan MM, Lee NS, Manley GA, Loria JP, et al. (2012) Allosteric pathways in imidazole glycerol phosphate synthase. Proc Natl Acad Sci USA 109: E1428-E1436.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Rivalta, I.1
Sultan, M.M.2
Lee, N.S.3
Manley, G.A.4
Loria, J.P.5
-
93
-
-
84871836555
-
Allosteric networks in thrombin distinguish procoagulant vs. Anticoagulant activities
-
Gasper PM, Fuglestad B, Komives EA, Markwick PR, McCammon JA (2012) Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities. Proc Natl Acad Sci USA 109: 21216-21222.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 21216-21222
-
-
Gasper, P.M.1
Fuglestad, B.2
Komives, E.A.3
Markwick, P.R.4
McCammon, J.A.5
-
94
-
-
84879707465
-
Activation and dynamic network of the M2 muscarinic receptor
-
Miao Y, Nichols SE, Gasper PM, Metzger VT, McCammon JA (2013) Activation and dynamic network of the M2 muscarinic receptor. Proc Natl Acad Sci USA 110: 10982-10987.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 10982-10987
-
-
Miao, Y.1
Nichols, S.E.2
Gasper, P.M.3
Metzger, V.T.4
McCammon, J.A.5
-
95
-
-
84871034858
-
3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization
-
Bhattacharya D, Cheng J. (2013) 3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization. Proteins 81: 119-131.
-
(2013)
Proteins
, vol.81
, pp. 119-131
-
-
Bhattacharya, D.1
Cheng, J.2
-
96
-
-
33646200456
-
Investigating the local flexibility of functional residues in hemoproteins
-
Sacquin-Mora S, Lavery R (2006) Investigating the local flexibility of functional residues in hemoproteins. Biophys J 90: 2706-2717.
-
(2006)
Biophys J
, vol.90
, pp. 2706-2717
-
-
Sacquin-Mora, S.1
Lavery, R.2
-
98
-
-
51649113464
-
Exploring the suitability of coarse-grained techniques for the representation of protein dynamics
-
Emperador A, Carrillo O, Rueda M, Orozco M (2008) Exploring the suitability of coarse-grained techniques for the representation of protein dynamics. Biophys J 95: 2127-2138.
-
(2008)
Biophys J
, vol.95
, pp. 2127-2138
-
-
Emperador, A.1
Carrillo, O.2
Rueda, M.3
Orozco, M.4
-
99
-
-
77949346997
-
Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials
-
Emperador A, Meyer T, Orozco M (2010) Protein flexibility from discrete molecular dynamics simulations using quasi-physical potentials. Proteins 78: 83-94.
-
(2010)
Proteins
, vol.78
, pp. 83-94
-
-
Emperador, A.1
Meyer, T.2
Orozco, M.3
-
100
-
-
67649236681
-
FlexServ: An integrated tool for the analysis of protein flexibility
-
Camps J, Carrillo O, Emperador A, Orellana L, Hospital A, et al. (2009) FlexServ: an integrated tool for the analysis of protein flexibility. Bioinformatics 25: 1709-1710.
-
(2009)
Bioinformatics
, vol.25
, pp. 1709-1710
-
-
Camps, J.1
Carrillo, O.2
Emperador, A.3
Orellana, L.4
Hospital, A.5
-
101
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts DJ, Strogatz SH (1998) Collective dynamics of 'small-world' networks. Nature 393: 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
102
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási AL, Albert R (1999) Emergence of scaling in random networks. Science 286: 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.L.1
Albert, R.2
-
103
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabási AL (2002) Hierarchical organization of modularity in metabolic networks. Science 297: 1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabási, A.L.5
-
104
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
Palla G, Derényi I, Farkas I, Vicsek T (2005) Uncovering the overlapping community structure of complex networks in nature and society. Nature 435: 814-818.
-
(2005)
Nature
, vol.435
, pp. 814-818
-
-
Palla, G.1
Derényi, I.2
Farkas, I.3
Vicsek, T.4
-
105
-
-
77954219912
-
Split Renilla luciferase protein fragment-assisted complementation (SRL-PFAC) to characterize Hsp90-Cdc37 complex and identify critical residues in protein/protein interactions
-
Jiang Y, Bernard D, Yu Y, Xie Y, Zhang T, et al. (2010) Split Renilla luciferase protein fragment-assisted complementation (SRL-PFAC) to characterize Hsp90-Cdc37 complex and identify critical residues in protein/protein interactions. J Biol Chem 285: 21023-21036.
-
(2010)
J Biol Chem
, vol.285
, pp. 21023-21036
-
-
Jiang, Y.1
Bernard, D.2
Yu, Y.3
Xie, Y.4
Zhang, T.5
-
106
-
-
18744389789
-
Assortative mixing in networks
-
Newman ME (2002) Assortative mixing in networks. Phys Rev Lett 89: 208701.
-
(2002)
Phys Rev Lett
, vol.89
, pp. 208701
-
-
Newman, M.E.1
-
109
-
-
34547909602
-
Assortative mixing in protein contact networks and protein folding kinetics
-
Bagler G, Sinha S (2007) Assortative mixing in protein contact networks and protein folding kinetics. Bioinformatics 23: 1760-1767.
-
(2007)
Bioinformatics
, vol.23
, pp. 1760-1767
-
-
Bagler, G.1
Sinha, S.2
-
110
-
-
34447270231
-
Hydrophobic, hydrophilic, and charged amino acid networks within protein
-
Aftabuddin M, Kundu S (2007) Hydrophobic, hydrophilic, and charged amino acid networks within protein. Biophys J 93: 225-231.
-
(2007)
Biophys J
, vol.93
, pp. 225-231
-
-
Aftabuddin, M.1
Kundu, S.2
-
111
-
-
67749140118
-
Scale-free networks: A decade and beyond
-
Barabási AL (2009)Scale-free networks: a decade and beyond. Science 325: 412-413.
-
(2009)
Science
, vol.325
, pp. 412-413
-
-
Barabási, A.L.1
-
113
-
-
0346057951
-
Small-world communication of residues and significance for protein dynamics
-
Atilgan AR, Akan P, Baysal C (2004) Small-world communication of residues and significance for protein dynamics. Biophys J 86: 85-91.
-
(2004)
Biophys J
, vol.86
, pp. 85-91
-
-
Atilgan, A.R.1
Akan, P.2
Baysal, C.3
-
114
-
-
9944223645
-
Network properties of protein structures
-
Bagler G, Sinha S (2005) Network properties of protein structures. Physica A, 346: 27-33.
-
(2005)
Physica A
, vol.346
, pp. 27-33
-
-
Bagler, G.1
Sinha, S.2
-
115
-
-
34249910312
-
Network analysis of protein dynamics
-
Böde C, Kovács IA, Szalay MS, Palotai R, Korcsmáros T, et al. (2007) Network analysis of protein dynamics. FEBS Lett 58: 2776-2782.
-
(2007)
FEBS Lett
, vol.58
, pp. 2776-2782
-
-
Böde, C.1
Kovács, I.A.2
Szalay, M.S.3
Palotai, R.4
Korcsmáros, T.5
-
116
-
-
84870328990
-
Rigidity and flexibility of biological networks
-
Gáspár ME, Csermely P (2012) Rigidity and flexibility of biological networks. Brief Funct Genomics 11: 443-456.
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 443-456
-
-
Gáspár, M.E.1
Csermely, P.2
-
117
-
-
84857131975
-
Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function: Hypotheses and a comprehensive review
-
Csermely P, Sandhu KS, Hazai E, Hoksza Z, Kiss HJ, et al. (2012) Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function: hypotheses and a comprehensive review. Curr Protein Pept Sci 13: 19-33.
-
(2012)
Curr Protein Pept Sci
, vol.13
, pp. 19-33
-
-
Csermely, P.1
Sandhu, K.S.2
Hazai, E.3
Hoksza, Z.4
Kiss, H.J.5
-
118
-
-
84865695733
-
Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition
-
Taipale M, Krykbaeva I, Koeva M, Kayatekin C, Westover KD et al. (2012) Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition. Cell 150: 987-1001.
-
(2012)
Cell
, vol.150
, pp. 987-1001
-
-
Taipale, M.1
Krykbaeva, I.2
Koeva, M.3
Kayatekin, C.4
Westover, K.D.5
-
119
-
-
84880307149
-
Chaperones as thermodynamic sensors of drug-target interactions reveal kinase inhibitor specificities in living cells
-
Taipale M, Krykbaeva I, Whitesell L, Santagata S, Zhang J, et al. (2013) Chaperones as thermodynamic sensors of drug-target interactions reveal kinase inhibitor specificities in living cells. Nat Biotechnol 31: 630-637.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 630-637
-
-
Taipale, M.1
Krykbaeva, I.2
Whitesell, L.3
Santagata, S.4
Zhang, J.5
-
120
-
-
84857943078
-
Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response
-
M111.014654
-
Sharma K, Vabulas RM, Macek B, Pinkert S, Cox J et al. (2012) Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response. Mol Cell Proteomics 11:M111.014654.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Sharma, K.1
Vabulas, R.M.2
Macek, B.3
Pinkert, S.4
Cox, J.5
-
121
-
-
84862323158
-
Systematic identification of the HSP90 candidate regulated proteome
-
M111.016675
-
Wu Z, Moghaddas Gholami A, Kuster B (2012) Systematic identification of the HSP90 candidate regulated proteome. Mol Cell Proteomics 11:M111.016675.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Wu, Z.1
Moghaddas Gholami, A.2
Kuster, B.3
-
122
-
-
25444528449
-
WEBnm@: A web application for normal mode analyses of proteins
-
Hollup SM, Salensminde G, Reuter N (2005) WEBnm@: a web application for normal mode analyses of proteins. BMC Bioinformatics 6: 52.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 52
-
-
Hollup, S.M.1
Salensminde, G.2
Reuter, N.3
-
123
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen K (1998) Analysis of domain motions by approximate normal mode calculations. Proteins 33: 417-429.
-
(1998)
Proteins
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
124
-
-
67249148362
-
Exploring network structure, dynamics, and function using Networkx
-
eds Varoquaux G, Vaught T, Millman J (Pasadena, CA) Available at Accessed January 12, 2011
-
Hagberg AA, Schult DA, Swart PJ (2008) Exploring network structure, dynamics, and function using Networkx. Proceedings of the 7th Python in Science Conference (SciPy2008), eds Varoquaux G, Vaught T, Millman J (Pasadena, CA) 11-15. Available at http://conference.scipy.org/proceedings/scipy2008/paper-2/. Accessed January 12, 2011.
-
(2008)
Proceedings of the 7th Python in Science Conference (SciPy2008)
, pp. 11-15
-
-
Hagberg, A.A.1
Schult, D.A.2
Swart, P.J.3
|