Construction and application of the weighted amino acid network based on energy

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 75, Issue 5, 2007, Pages

  Jiao, Xiong ^a   Chang, Shan ^a   Li, Chun Hua ^a   Chen, Wei Zu ^a   Wang, Cun Xin ^a  

^a BEIJING UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

HIGH TEMPERATURE EFFECTS; HYDROPHILICITY; PROTEIN FOLDING; STATISTICS;

COMPLEX NETWORK THEORY; CONTACT ENERGY; WEIGHTED AMINO ACID NETWORKS;

AMINO ACIDS;

EID: 34248185088     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.75.051903     Document Type: Article

References (18)

1. D. J. Watts and S. H. Strogatz, Nature (London) NATUAS 0028-0836 10.1038/30918 393, 440 (1998).
2. M. Vendruscolo, N. V. Dokholyan, E. Paci, and M. Karplus, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.65.061910 65, 061910 (2002).
3. N. V. Dokholyan, L. Li, F. Ding, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.122076099 99, 8637 (2002).
4. A. R. Atilgan, P. Akan, and C. Baysal, Biophys. J. BIOJAU 0006-3495 86, 85 (2004).
5. G. Amitai, A. Shemesh, E. Sitbon, J. Mol. Biol. JMOBAK 0022-2836 10.1016/j.jmb.2004.10.055 344, 1135 (2004).
6. D. J. Jacobs, A. J. Rader, L. A. Kuhn, Proteins: Struct., Funct., Genet. PSFGEY 0087-3585 10.1002/prot.1081 44, 150 (2001).
7. K. V. Brinda and S. Vishveshwara, Biophys. J. BIOJAU 0006-3495 89, 4159 (2005).
8. L. H. Greene and V. A. Higman, J. Mol. Biol. JMOBAK 0022-2836 10.1016/j.jmb.2003.08.061 334, 781 (2003).
9. M. Aftabuddin and S. Kundu, Physica A PHYADX 0378-4371 369, 895 (2006).
10. A. J. Li and V. Daggett, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.1996.0172 257, 412 (1996).
11. J. H. Wang, Z. Y. Zhang, H. Y. Liu, and Y. Shi, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.67.061903 67, 061903 (2003).
12. S. Miyazawa and R. L. Jernigan, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.1996.0114 256, 623 (1996).
13. A. Barrat, M. Barthelemy, R. Pastor-Satorras, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.0400087101 101, 3747 (2004).
14. S. J. Sun, R. Brem, H. S. Chan, Protein Eng. PRENE9 0269-2139 8, 1205 (1995).
15. E. Lindahl, B. Hess, and D. van der Spoel, J. Mol. Model. JMMOFK 0948-5023 10.1007/s008940100045 7, 306 (2001).
16. R. B. Best and M. Vendruscolo, Structure (London) STRUE6 0969-2126 14, 97 (2006).
17. L. S. Itzhaki, D. E. Otzen, and A. R. Fersht, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.1995.0616 254, 260 (1995).
18. L. Mirny and E. Shakhnovich, Annu. Rev. Biophys. Biomol. Struct. ABBSE4 1056-8700 10.1146/annurev.biophys.30.1.361 30, 361 (2001).