-
1
-
-
0036205337
-
The CATH protein family database: A resource for structural and functional annotation of genomes
-
Orengo, C. A., J. E. Bray, D. W. Buchan, A. Harrison, D. Lee, F. M. Pearl, I. Sillitoe, A. E. Todd, and J. M. Thornton. 2002. The CATH protein family database: a resource for structural and functional annotation of genomes. Proteomics. 2:11-21.
-
(2002)
Proteomics
, vol.2
, pp. 11-21
-
-
Orengo, C.A.1
Bray, J.E.2
Buchan, D.W.3
Harrison, A.4
Lee, D.5
Pearl, F.M.6
Sillitoe, I.7
Todd, A.E.8
Thornton, J.M.9
-
2
-
-
0041852853
-
The role of dynamics in enzyme activity
-
Daniel, R. M., R. V. Dunn, J. L. Finney, and J. C. Smith. 2003. The role of dynamics in enzyme activity. Annu. Rev. Biophys. Biomol. Struct. 32:69-92.
-
(2003)
Annu. Rev. Biophys. Biomol. Struct.
, vol.32
, pp. 69-92
-
-
Daniel, R.M.1
Dunn, R.V.2
Finney, J.L.3
Smith, J.C.4
-
3
-
-
0037292622
-
Physical aspects of protein dynamics
-
Parak, F. 2003. Physical aspects of protein dynamics. Rep. Prog. Phys. 66:103-129.
-
(2003)
Rep. Prog. Phys.
, vol.66
, pp. 103-129
-
-
Parak, F.1
-
4
-
-
0037083363
-
Essential domain motions in barnase revealed by MD simulations
-
Nolde, S. B., A. S. Arseniev, V. Y. Orekhov, and M. Billeter. 2002. Essential domain motions in barnase revealed by MD simulations. Proteins. 46:250-258.
-
(2002)
Proteins
, vol.46
, pp. 250-258
-
-
Nolde, S.B.1
Arseniev, A.S.2
Orekhov, V.Y.3
Billeter, M.4
-
5
-
-
0037671391
-
Interdomain dynamics and ligand binding: Molecular dynamics simulations of glutamine binding protein
-
Pang, A., Y. Arinaminpathy, M. S. Sansom, and P. C. Biggin. 2003. Interdomain dynamics and ligand binding: molecular dynamics simulations of glutamine binding protein. FEBS Lett. 550:168-174.
-
(2003)
FEBS Lett.
, vol.550
, pp. 168-174
-
-
Pang, A.1
Arinaminpathy, Y.2
Sansom, M.S.3
Biggin, P.C.4
-
6
-
-
18744371588
-
Molecular dynamics and protein function
-
Karplus, M., and J. Kuriyan. 2005. Molecular dynamics and protein function. Proc. Natl. Acad. Sci. USA. 102:6679-6685.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6679-6685
-
-
Karplus, M.1
Kuriyan, J.2
-
7
-
-
0000991642
-
Harmonic dynamics of proteins: Normal modes and fluctuations in bovine pancreatic trypsin inhibitor
-
Brooks, B., and M. Karplus. 1983. Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. Proc. Natl. Acad. Sci. USA. 80:6571-6575.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 6571-6575
-
-
Brooks, B.1
Karplus, M.2
-
8
-
-
0022111715
-
Normal modes for specific motions of macromolecules: Application to the hinge-bending mode of lysozyme
-
Brooks, B., and M. Karplus. 1985. Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme. Proc. Natl. Acad. Sci. USA. 82:4995-4999.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 4995-4999
-
-
Brooks, B.1
Karplus, M.2
-
9
-
-
0029374782
-
Computation of low-frequency normal modes in macromolecules: Improvements to the method of diagonalization in a mixed basis and application to hemoglobin
-
Perahia, D., and L. Mouawad. 1995. Computation of low-frequency normal modes in macromolecules: improvements to the method of diagonalization in a mixed basis and application to hemoglobin. Comput. Chem. 19:241-246.
-
(1995)
Comput. Chem.
, vol.19
, pp. 241-246
-
-
Perahia, D.1
Mouawad, L.2
-
10
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar, I., A. R. Atilgan, and B. Erman. 1997. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold. Des. 2:173-181.
-
(1997)
Fold. Des.
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
12
-
-
0034308140
-
Building-block approach for determining low-frequency normal modes of macromolecules
-
Tama, F., F. X. Gadea, O. Marques, and Y. H. Sanejouand. 2000. Building-block approach for determining low-frequency normal modes of macromolecules. Proteins. 41:1-7.
-
(2000)
Proteins
, vol.41
, pp. 1-7
-
-
Tama, F.1
Gadea, F.X.2
Marques, O.3
Sanejouand, Y.H.4
-
13
-
-
0000496772
-
Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability
-
Bahar, I., A. R. Atilgan, M. C. Demirel, and B. Erman. 1998. Vibrational dynamics of folded proteins: significance of slow and fast motions in relation to function and stability. Phys. Rev. Lett. 80:2733-2736.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 2733-2736
-
-
Bahar, I.1
Atilgan, A.R.2
Demirel, M.C.3
Erman, B.4
-
14
-
-
0033557178
-
Analysis of domain motions in large proteins
-
Hinsen, K., A. Thomas, and M. J. Field. 1999. Analysis of domain motions in large proteins. Proteins. 34:369-382.
-
(1999)
Proteins
, vol.34
, pp. 369-382
-
-
Hinsen, K.1
Thomas, A.2
Field, M.J.3
-
15
-
-
0036382958
-
Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory
-
Tama, F., W. Wriggers, and C. L. Brooks 3rd. 2002. Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory. J. Mol. Biol. 321:297-305.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 297-305
-
-
Tama, F.1
Wriggers, W.2
Brooks III, C.L.3
-
16
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan, A. R., S. R. Durell, R. L. Jernigan, M. C. Demirel, O. Keskin, and I. Bahar. 2001. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys. J. 80:505-515.
-
(2001)
Biophys. J.
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
Bahar, I.6
-
17
-
-
0037173062
-
How to describe protein motion without amino acid sequence and atomic coordinates
-
Ming, D., Y. Kong, M. A. Lambert, Z. Huang, and J. Ma. 2002. How to describe protein motion without amino acid sequence and atomic coordinates. Proc. Natl. Acad. Sci. USA. 99:8620-8625.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8620-8625
-
-
Ming, D.1
Kong, Y.2
Lambert, M.A.3
Huang, Z.4
Ma, J.5
-
18
-
-
0036775029
-
Elastic models of conformational transitions in macromolecules
-
Kim, M. K., G. S. Chirikjian, and R. L. Jernigan. 2002. Elastic models of conformational transitions in macromolecules. J. Mol. Graph. Model. 21:151-160.
-
(2002)
J. Mol. Graph. Model
, vol.21
, pp. 151-160
-
-
Kim, M.K.1
Chirikjian, G.S.2
Jernigan, R.L.3
-
19
-
-
1042291214
-
Myosin flexibility: Structural domains and collective vibrations
-
Navizet, I., R. Lavery, and R. L. Jernigan. 2004. Myosin flexibility: structural domains and collective vibrations. Proteins. 54:384-393.
-
(2004)
Proteins
, vol.54
, pp. 384-393
-
-
Navizet, I.1
Lavery, R.2
Jernigan, R.L.3
-
20
-
-
22244439241
-
Protein flexibility prediction by an all-atom mean-field statistical theory
-
Pandey, B. P., C. Zhang, X. Yuan, J. Zi, and Y. Zhou. 2005. Protein flexibility prediction by an all-atom mean-field statistical theory. Protein Sci. 14:1772-1777.
-
(2005)
Protein Sci.
, vol.14
, pp. 1772-1777
-
-
Pandey, B.P.1
Zhang, C.2
Yuan, X.3
Zi, J.4
Zhou, Y.5
-
21
-
-
0037316987
-
Flexibility analysis of enzyme active sites by crystallographic temperature factors
-
Yuan, Z., J. Zhao, and Z. X. Wang. 2003. Flexibility analysis of enzyme active sites by crystallographic temperature factors. Protein Eng. 16:109-114.
-
(2003)
Protein Eng.
, vol.16
, pp. 109-114
-
-
Yuan, Z.1
Zhao, J.2
Wang, Z.X.3
-
23
-
-
0019322641
-
Carbon-13 nuclear magnetic resonance relaxation studies of internal mobility of the polypeptide chain in basic pancreatic trypsin inhibitor and a selectively reduced analogue
-
Richarz, R., K. Nagayama, and K. Wuthrich. 1980. Carbon-13 nuclear magnetic resonance relaxation studies of internal mobility of the polypeptide chain in basic pancreatic trypsin inhibitor and a selectively reduced analogue. Biochemistry. 19:5189-5196.
-
(1980)
Biochemistry
, vol.19
, pp. 5189-5196
-
-
Richarz, R.1
Nagayama, K.2
Wuthrich, K.3
-
25
-
-
3342993181
-
Hydrogen exchange methods to study protein folding
-
Krishna, M. M., L. Hoang, Y. Lin, and S. W. Englander. 2004. Hydrogen exchange methods to study protein folding. Methods. 34:51-64.
-
(2004)
Methods
, vol.34
, pp. 51-64
-
-
Krishna, M.M.1
Hoang, L.2
Lin, Y.3
Englander, S.W.4
-
26
-
-
0032574827
-
Dynamics and function of proteins: The search for general concepts
-
Frauenfelder, H., and B. McMahon. 1998. Dynamics and function of proteins: the search for general concepts. Proc. Natl. Acad. Sci. USA. 95:4795-4797.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4795-4797
-
-
Frauenfelder, H.1
McMahon, B.2
-
27
-
-
0034595671
-
How soft is a protein? A protein dynamics force constant measured by neutron scattering
-
Zaccai, G. 2000. How soft is a protein? A protein dynamics force constant measured by neutron scattering. Science. 288:1604-1607.
-
(2000)
Science
, vol.288
, pp. 1604-1607
-
-
Zaccai, G.1
-
28
-
-
1842508814
-
C subunits binding to the protein kinase a RI alpha dimer induce a large conformational change
-
Heller, W. T., D. Vigil, S. Brown, D. K. Blumenthal, S. S. Taylor, and J. Trewhella. 2004. C subunits binding to the protein kinase A RI alpha dimer induce a large conformational change. J. Biol. Chem. 279:19084-19090.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 19084-19090
-
-
Heller, W.T.1
Vigil, D.2
Brown, S.3
Blumenthal, D.K.4
Taylor, S.S.5
Trewhella, J.6
-
29
-
-
4444251032
-
Probing protein mechanics: Residue-level properties and their use in defining domains
-
Navizet, I., F. Cailliez, and R. Lavery. 2004. Probing protein mechanics: residue-level properties and their use in defining domains. Biophys. J. 87:1426-1435.
-
(2004)
Biophys. J.
, vol.87
, pp. 1426-1435
-
-
Navizet, I.1
Cailliez, F.2
Lavery, R.3
-
30
-
-
0036435882
-
Analysis of catalytic residues in enzyme active sites
-
Bartlett, G. J., C. T. Porter, N. Borkakoti, and J. M. Thornton. 2002. Analysis of catalytic residues in enzyme active sites. J. Mol. Biol. 324:105-121.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 105-121
-
-
Bartlett, G.J.1
Porter, C.T.2
Borkakoti, N.3
Thornton, J.M.4
-
31
-
-
20444409186
-
Coupling between catalytic site and collective dynamics: A requirement for mechanochemical activity of enzymes
-
Yang, L. W., and I. Bahar. 2005. Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. Structure. 13:893-904.
-
(2005)
Structure
, vol.13
, pp. 893-904
-
-
Yang, L.W.1
Bahar, I.2
-
32
-
-
0002548867
-
Heme: The most versatile redox centre in biology?
-
Chapman, S. K., S. Daff, and A. W. Munro. 1997. Heme: the most versatile redox centre in biology? Struct. Bond. 88:39-70.
-
(1997)
Struct. Bond.
, vol.88
, pp. 39-70
-
-
Chapman, S.K.1
Daff, S.2
Munro, A.W.3
-
33
-
-
0038583687
-
Protein-protein docking with a reduced protein model accounting for side-chain flexibility
-
Zacharias, M. 2003. Protein-protein docking with a reduced protein model accounting for side-chain flexibility. Protein Sci. 12:1271-1282.
-
(2003)
Protein Sci.
, vol.12
, pp. 1271-1282
-
-
Zacharias, M.1
-
34
-
-
33644843079
-
Accounting for loop flexibility during protein-protein docking
-
Bastard, K., C. Prevost, and M. Zacharias. 2005. Accounting for loop flexibility during protein-protein docking. Proteins. 62:959-969.
-
(2005)
Proteins
, vol.62
, pp. 959-969
-
-
Bastard, K.1
Prevost, C.2
Zacharias, M.3
-
35
-
-
21644435306
-
ATTRACT: Protein-protein docking in CAPRI using a reduced protein model
-
Zacharias, M. 2005. ATTRACT: protein-protein docking in CAPRI using a reduced protein model. Proteins. 60:252-256.
-
(2005)
Proteins
, vol.60
, pp. 252-256
-
-
Zacharias, M.1
-
36
-
-
0037079578
-
Dynamics of large proteins through hierarchical levels of coarse-grained structures
-
Doruker, P., R. L. Jernigan, and I. Bahar. 2002. Dynamics of large proteins through hierarchical levels of coarse-grained structures. J. Comput. Chem. 23:119-127.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 119-127
-
-
Doruker, P.1
Jernigan, R.L.2
Bahar, I.3
-
37
-
-
17044393884
-
Coarse-grained models for proteins
-
Tozzini, V. 2005. Coarse-grained models for proteins. Curr. Opin. Struct. Biol. 15:144-150.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 144-150
-
-
Tozzini, V.1
-
38
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion, M. M. 1996. Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys. Rev. Lett. 77:1905-1908.
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
39
-
-
0036616218
-
The Protein Data Bank
-
Berman, H. M., T. Battistuz, T. N. Bhat, W. F. Bluhm, P. E. Bourne, K. Burkhardt, Z. Feng, G. L. Gilliland, L. Iype, S. Jain, P. Fagan, J. Marvin, D. Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J. D. Westbrook, and C. Zardecki. 2002. The Protein Data Bank. Acta Crystallogr. D Biol. Crystallogr. 58:899-907.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
Fagan, P.11
Marvin, J.12
Padilla, D.13
Ravichandran, V.14
Schneider, B.15
Thanki, N.16
Weissig, H.17
Westbrook, J.D.18
Zardecki, C.19
-
41
-
-
0027446430
-
Gating of the active site of triose phosphate isomerase: Brownian dynamics simulations of flexible peptide loops in the enzyme
-
Wade, R. C., M. E. Davis, B. A. Luty, J. D. Madura, and J. A. McCammon. 1993. Gating of the active site of triose phosphate isomerase: Brownian dynamics simulations of flexible peptide loops in the enzyme. Biophys. J. 64:9-15.
-
(1993)
Biophys. J.
, vol.64
, pp. 9-15
-
-
Wade, R.C.1
Davis, M.E.2
Luty, B.A.3
Madura, J.D.4
McCammon, J.A.5
-
42
-
-
0033198418
-
2-adrenergic receptor extracellular loops: Evidence for helix movement in ligand binding?
-
2-adrenergic receptor extracellular loops: evidence for helix movement in ligand binding? J. Mol. Struct. THEOCHEM. 469:229-232.
-
(1999)
J. Mol. Struct. THEOCHEM.
, vol.469
, pp. 229-232
-
-
Kamiya, Y.1
Reynolds, C.A.2
-
43
-
-
33750652614
-
Brownian dynamics with hydrodynamic interactions
-
Ermak, D. L., and J. A. McCammon. 1978. Brownian dynamics with hydrodynamic interactions. J. Chem. Phys. 69:1352-1360.
-
(1978)
J. Chem. Phys.
, vol.69
, pp. 1352-1360
-
-
Ermak, D.L.1
McCammon, J.A.2
-
44
-
-
36549103824
-
Brownian dynamics simulation of a lipid chain in a membrane bilayer
-
Pastor, R. W., R. Venable, and M. Karplus. 1988. Brownian dynamics simulation of a lipid chain in a membrane bilayer. J. Chem. Phys. 89:1112-1127.
-
(1988)
J. Chem. Phys.
, vol.89
, pp. 1112-1127
-
-
Pastor, R.W.1
Venable, R.2
Karplus, M.3
-
45
-
-
84933517499
-
Variational treatment of hydrodynamic interaction in polymers
-
Rotne, J., and S. Prager. 1969. Variational treatment of hydrodynamic interaction in polymers. J. Chem. Phys. 50:4831-4837.
-
(1969)
J. Chem. Phys.
, vol.50
, pp. 4831-4837
-
-
Rotne, J.1
Prager, S.2
-
46
-
-
0142123115
-
Biomolecular hydration: From water dynamics to hydrodynamics
-
Halle, B., and M. Davidovic. 2003. Biomolecular hydration: from water dynamics to hydrodynamics. Proc. Natl. Acad. Sci. USA. 100:12135-12140.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12135-12140
-
-
Halle, B.1
Davidovic, M.2
-
47
-
-
0031568816
-
4 from Pseudomonas stutzeri determined at 2.2 Å resolution
-
4 from Pseudomonas stutzeri determined at 2.2 Å resolution. Structure. 5:203-216.
-
(1997)
Structure
, vol.5
, pp. 203-216
-
-
Kadziola, A.1
Larsen, S.2
-
48
-
-
0030780270
-
Crystal structure of horseradish peroxidase C at 2.15 Å resolution
-
Gajhede, M., D. J. Schuller, A. Henriksen, A. T. Smith, and T. L. Poulos. 1997. Crystal structure of horseradish peroxidase C at 2.15 Å resolution. Nat. Struct. Biol. 4:1032-1038.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 1032-1038
-
-
Gajhede, M.1
Schuller, D.J.2
Henriksen, A.3
Smith, A.T.4
Poulos, T.L.5
-
49
-
-
0028467772
-
Structure of a unique two-fold symmetric haem-binding site
-
Frolow, F., A. J. Kalb, and J. Yariv. 1994. Structure of a unique two-fold symmetric haem-binding site. Nat. Struct. Biol. 1:453-460.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 453-460
-
-
Frolow, F.1
Kalb, A.J.2
Yariv, J.3
-
50
-
-
2942613843
-
Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617
-
Dias, J. M., T. Alves, C. Bonifacio, A. S. Pereira, J. Trincao, D. Bourgeois, I. Moura, and M. J. Romao. 2004. Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617. Structure. 12:961-973.
-
(2004)
Structure
, vol.12
, pp. 961-973
-
-
Dias, J.M.1
Alves, T.2
Bonifacio, C.3
Pereira, A.S.4
Trincao, J.5
Bourgeois, D.6
Moura, I.7
Romao, M.J.8
-
51
-
-
0032825215
-
Crystal structure of hemopexin reveals a novel high-affinity heme site formed between two β-propeller domains
-
Paoli, M., B. F. Anderson, H. M. Baker, W. T. Morgan, A. Smith, and E. N. Baker. 1999. Crystal structure of hemopexin reveals a novel high-affinity heme site formed between two β-propeller domains. Nat. Struct. Biol. 6:926-931.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 926-931
-
-
Paoli, M.1
Anderson, B.F.2
Baker, H.M.3
Morgan, W.T.4
Smith, A.5
Baker, E.N.6
-
52
-
-
0029054793
-
The anatomy of a bifunctional enzyme: Structural basis for reduction of oxygen to water and synthesis of nitric oxide by cytochrome cd1
-
Fulop, V., J. W. Moir, S. J. Ferguson, and J. Hajdu. 1995. The anatomy of a bifunctional enzyme: structural basis for reduction of oxygen to water and synthesis of nitric oxide by cytochrome cd1. Cell. 81:369-377.
-
(1995)
Cell
, vol.81
, pp. 369-377
-
-
Fulop, V.1
Moir, J.W.2
Ferguson, S.J.3
Hajdu, J.4
-
53
-
-
0033596908
-
Cooperative fluctuations and subunit communication in tryptophan synthase
-
Bahar, I., and R. L. Jernigan. 1999. Cooperative fluctuations and subunit communication in tryptophan synthase. Biochemistry. 38:3478-3490.
-
(1999)
Biochemistry
, vol.38
, pp. 3478-3490
-
-
Bahar, I.1
Jernigan, R.L.2
-
54
-
-
0037252685
-
MMDB: Entrez's 3D-structure database
-
Chen, J., J. B. Anderson, C. DeWeese-Scott, N. D. Fedorova, L. Y. Geer, S. He, D. I. Hurwitz, J. D. Jackson, A. R. Jacobs, C. J. Lanczycki, C. A. Liebert, C. Liu, T. Madej, A. Marchler-Bauer, G. H. Marchler, R. Mazumder, A. N. Nikolskaya, B. S. Rao, A. R. Panchenko, B. A. Shoemaker, V. Simonyan, J. S. Song, P. A. Thiessen, S. Vasudevan, Y. Wang, R. A. Yamashita, J. J. Yin, and S. H. Bryant. 2003. MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 31:474-477.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 474-477
-
-
Chen, J.1
Anderson, J.B.2
DeWeese-Scott, C.3
Fedorova, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
Liebert, C.A.11
Liu, C.12
Madej, T.13
Marchler-Bauer, A.14
Marchler, G.H.15
Mazumder, R.16
Nikolskaya, A.N.17
Rao, B.S.18
Panchenko, A.R.19
Shoemaker, B.A.20
Simonyan, V.21
Song, J.S.22
Thiessen, P.A.23
Vasudevan, S.24
Wang, Y.25
Yamashita, R.A.26
Yin, J.J.27
Bryant, S.H.28
more..
-
55
-
-
0033591436
-
Does the reduction of c heme trigger the conformational change of crystalline nitrite reductase?
-
Nurizzo, D., F. Cutruzzola, M. Arese, D. Bourgeois, M. Brunori, C. Cambillau, and M. Tegoni. 1999. Does the reduction of c heme trigger the conformational change of crystalline nitrite reductase? J. Biol. Chem. 274:14997-15004.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 14997-15004
-
-
Nurizzo, D.1
Cutruzzola, F.2
Arese, M.3
Bourgeois, D.4
Brunori, M.5
Cambillau, C.6
Tegoni, M.7
-
56
-
-
0032496419
-
Protein folding and protein evolution: Common folding nucleus in different subfamilies of c-type cytochromes?
-
Ptitsyn, O. B. 1998. Protein folding and protein evolution: common folding nucleus in different subfamilies of c-type cytochromes? J. Mol. Biol. 278:655-666.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 655-666
-
-
Ptitsyn, O.B.1
-
57
-
-
0033588067
-
Non-functional conserved residues in globins and their possible role as a folding nucleus
-
Ptitsyn, O. B., and K. L. Ting. 1999. Non-functional conserved residues in globins and their possible role as a folding nucleus. J. Mol. Biol. 291:671-682.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 671-682
-
-
Ptitsyn, O.B.1
Ting, K.L.2
-
58
-
-
0036006760
-
The crystal and molecular structures of diferric porcine and rabbit serum transferrins at resolutions of 2.15 and 2.60 Å, respectively
-
Hall, D. R., J. M. Hadden, G. A. Leonard, S. Bailey, M. Neu, M. Winn, and P. F. Lindley. 2002. The crystal and molecular structures of diferric porcine and rabbit serum transferrins at resolutions of 2.15 and 2.60 Å, respectively. Acta Crystallogr. D Biol. Crystallogr. 58:70-80.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 70-80
-
-
Hall, D.R.1
Hadden, J.M.2
Leonard, G.A.3
Bailey, S.4
Neu, M.5
Winn, M.6
Lindley, P.F.7
-
59
-
-
0032950626
-
Alternative metal-binding sites in rubrerythrin
-
Sieker, L. C., M. Holmes, I. Le Trong, S. Turley, B. D. Santarsiero, M. Y. Liu, J. LeGall, and R. E. Stenkamp. 1999. Alternative metal-binding sites in rubrerythrin. Nat. Struct. Biol. 6:308-309.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 308-309
-
-
Sieker, L.C.1
Holmes, M.2
Le Trong, I.3
Turley, S.4
Santarsiero, B.D.5
Liu, M.Y.6
Legall, J.7
Stenkamp, R.E.8
-
60
-
-
1042276706
-
Transferrin's mechanism of interaction with receptor 1
-
Hemadi, M., P. H. Kahn, G. Miquel, and J. M. El Hage Chahine. 2004. Transferrin's mechanism of interaction with receptor 1. Biochemistry. 43:1736-1745.
-
(2004)
Biochemistry
, vol.43
, pp. 1736-1745
-
-
Hemadi, M.1
Kahn, P.H.2
Miquel, G.3
El Hage Chahine, J.M.4
-
61
-
-
0023042001
-
Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from Prosthecochloris aestuarii refined at 1.9 Å resolution
-
Tronrud, D. E., M. F. Schmid, and B. W. Matthews. 1986. Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from Prosthecochloris aestuarii refined at 1.9 Å resolution. J. Mol. Biol. 188:443-454.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 443-454
-
-
Tronrud, D.E.1
Schmid, M.F.2
Matthews, B.W.3
-
62
-
-
0035846624
-
Main chain and side chain dynamics of oxidized flavodoxin from Cyanobacterium anabaena
-
Liu, W., P. F. Flynn, E. J. Fuentes, J. K. Kranz, M. McCormick, and A. J. Wand. 2001. Main chain and side chain dynamics of oxidized flavodoxin from Cyanobacterium anabaena. Biochemistry. 40:14744-14753.
-
(2001)
Biochemistry
, vol.40
, pp. 14744-14753
-
-
Liu, W.1
Flynn, P.F.2
Fuentes, E.J.3
Kranz, J.K.4
McCormick, M.5
Wand, A.J.6
-
63
-
-
0029989974
-
Crystal structure of the kinesin motor domain reveals a structural similarity to myosin
-
Kull, F. J., E. P. Sablin, R. Lau, R. J. Fletterick, and R. D. Vale. 1996. Crystal structure of the kinesin motor domain reveals a structural similarity to myosin. Nature. 380:550-555.
-
(1996)
Nature
, vol.380
, pp. 550-555
-
-
Kull, F.J.1
Sablin, E.P.2
Lau, R.3
Fletterick, R.J.4
Vale, R.D.5
-
64
-
-
0037022347
-
Flexibility and packing in proteins
-
Halle, B. 2002. Flexibility and packing in proteins. Proc. Natl. Acad. Sci. USA. 99:1274-1279.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1274-1279
-
-
Halle, B.1
-
65
-
-
18144378006
-
What contributions to protein side-chain dynamics are probed by NMR experiments? A molecular dynamics simulation analysis
-
Best, R. B., J. Clarke, and M. Karplus. 2005. What contributions to protein side-chain dynamics are probed by NMR experiments? A molecular dynamics simulation analysis. J. Mol. Biol. 349:185-203.
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 185-203
-
-
Best, R.B.1
Clarke, J.2
Karplus, M.3
-
66
-
-
0242578172
-
Intimate view of a kinetic protein folding intermediate: Residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity
-
Krishna, M. M., Y. Lin, L. Mayne, and S. W. Englander. 2003. Intimate view of a kinetic protein folding intermediate: residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity. J. Mol. Biol. 334:501-513.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 501-513
-
-
Krishna, M.M.1
Lin, Y.2
Mayne, L.3
Englander, S.W.4
|