-
1
-
-
78651189765
-
On the nature of allosteric transitions: A plausible model
-
10.1016/S0022-2836(65)80285-6. 14343300
-
On the nature of allosteric transitions: a plausible model. J Monod J Wyman JP Changeux, J Mol Biol 1965 12 88 118 10.1016/S0022-2836(65)80285-6 14343300
-
(1965)
J Mol Biol
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
2
-
-
0013863816
-
Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits
-
10.1021/bi00865a047. 5938952
-
Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits. DE Koshland G Nemethy D Filmer, Biochemistry 1966 5 1 365 385 10.1021/bi00865a047 5938952
-
(1966)
Biochemistry
, vol.5
, Issue.1
, pp. 365-385
-
-
Koshland, D.E.1
Nemethy, G.2
Filmer, D.3
-
3
-
-
41149104308
-
Allostery: Absence of a change in shape does not imply that allostery is not at play
-
10.1016/j.jmb.2008.02.034. 18353365
-
Allostery: Absence of a change in shape does not imply that allostery is not at play. C Tsai A del Sol R Nussinov, J Mol Biol 2008 378 1 11 10.1016/j.jmb.2008.02.034 18353365
-
(2008)
J Mol Biol
, vol.378
, pp. 1-11
-
-
Tsai, C.1
Del Sol, A.2
Nussinov, R.3
-
4
-
-
60649109828
-
Protein allostery, signal transmission and dynamics: A classification scheme of allosteric mechanisms
-
10.1039/b819720b. 19225609
-
Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. C Tsai A del Sol R Nussinov, Mol BioSyst 2009 5 3 207 216 10.1039/b819720b 19225609
-
(2009)
Mol BioSyst
, vol.5
, Issue.3
, pp. 207-216
-
-
Tsai, C.1
Del Sol, A.2
Nussinov, R.3
-
5
-
-
6344219895
-
Is allostery an intrinsic property of all dynamic proteins?
-
10.1002/prot.20232
-
Is allostery an intrinsic property of all dynamic proteins? K Gunasekaran B Ma R Nussinov, Proteins: Structure, Function, and Bioinformatics 2004 57 433 443 10.1002/prot.20232
-
(2004)
Proteins: Structure, Function, and Bioinformatics
, vol.57
, pp. 433-443
-
-
Gunasekaran, K.1
Ma, B.2
Nussinov, R.3
-
6
-
-
68149157248
-
The origin of allosteric functional modulation: Multiple pre-existing pathways
-
10.1016/j.str.2009.06.008. 19679084
-
The origin of allosteric functional modulation: multiple pre-existing pathways. A Del Sol C Tsai B Ma R Nussinov, Structure 2009 17 1042 1050 10.1016/j.str.2009.06.008 19679084
-
(2009)
Structure
, vol.17
, pp. 1042-1050
-
-
Del Sol, A.1
Tsai, C.2
Ma, B.3
Nussinov, R.4
-
7
-
-
40849097646
-
Free-Energy Landscape of Enzyme Catalysis
-
10.1021/bi800049z. 18298083
-
Free-Energy Landscape of Enzyme Catalysis. SJ Benkovic GG Hammes S Hammes-Schiffer, Biochemistry 2008 47 11 3317 3321 10.1021/bi800049z 18298083
-
(2008)
Biochemistry
, vol.47
, Issue.11
, pp. 3317-3321
-
-
Benkovic, S.J.1
Hammes, G.G.2
Hammes-Schiffer, S.3
-
8
-
-
47649125643
-
Allosteric regulation and catalysis emerge via a common route
-
10.1038/nchembio.98. 18641628
-
Allosteric regulation and catalysis emerge via a common route. NM Goodey SJ Benkovic, Nat Chem Biol 2008 4 474 482 10.1038/nchembio.98 18641628
-
(2008)
Nat Chem Biol
, vol.4
, pp. 474-482
-
-
Goodey, N.M.1
Benkovic, S.J.2
-
9
-
-
77951226274
-
At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?
-
20099310
-
At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis? SCL Kamerlin A Warshel, Proteins. 2010 78 6 1339 1375 20099310
-
(2010)
Proteins.
, vol.78
, Issue.6
, pp. 1339-1375
-
-
Kamerlin, S.C.L.1
Warshel, A.2
-
10
-
-
70350453758
-
Enzyme millisecond conformational dynamics do not catalyze the chemical step
-
10.1073/pnas.0909150106. 19805169
-
Enzyme millisecond conformational dynamics do not catalyze the chemical step. AV Pisliakov J Cao SCL Kamerlin A Warshel, Proc Natl Acad Sci U.S.A 2009 106 41 17359 17364 10.1073/pnas.0909150106 19805169
-
(2009)
Proc Natl Acad Sci U.S.A
, vol.106
, Issue.41
, pp. 17359-17364
-
-
Pisliakov, A.V.1
Cao, J.2
Kamerlin, S.C.L.3
Warshel, A.4
-
11
-
-
52949128744
-
On the relationship between folding and chemical landscapes in enzyme catalysis
-
10.1073/pnas.0803405105. 18779576
-
On the relationship between folding and chemical landscapes in enzyme catalysis. M Roca B Messer D Hilvert A Warshel, Proc Natl Acad Sci U.S.A 2008 105 37 13877 13882 10.1073/pnas.0803405105 18779576
-
(2008)
Proc Natl Acad Sci U.S.A
, vol.105
, Issue.37
, pp. 13877-13882
-
-
Roca, M.1
Messer, B.2
Hilvert, D.3
Warshel, A.4
-
12
-
-
37349079468
-
Exploring the role of large conformational changes in the fidelity of DNA polymerase beta
-
10.1002/prot.21668
-
Exploring the role of large conformational changes in the fidelity of DNA polymerase beta. Y Xiang MF Goodman WA Beard SH Wilson A Warshel, Proteins: Structure, Function, and Bioinformatics 2008 70 1 231 247 10.1002/prot.21668
-
(2008)
Proteins: Structure, Function, and Bioinformatics
, vol.70
, Issue.1
, pp. 231-247
-
-
Xiang, Y.1
Goodman, M.F.2
Beard, W.A.3
Wilson, S.H.4
Warshel, A.5
-
13
-
-
36849048228
-
Intrinsic motions along an enzymatic reaction trajectory
-
10.1038/nature06410. 18026086
-
Intrinsic motions along an enzymatic reaction trajectory. KA Henzler-Wildman V Thai M Lei M Ott M Wolf-Watz T Fenn E Pozharski MA Wilson GA Petsko M Karplus CG Hubner D Kern, Nature 2007 450 7171 838 844 10.1038/nature06410 18026086
-
(2007)
Nature
, vol.450
, Issue.7171
, pp. 838-844
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
Fenn, T.6
Pozharski, E.7
Wilson, M.A.8
Petsko, G.A.9
Karplus, M.10
Hubner, C.G.11
Kern, D.12
-
14
-
-
70849084890
-
Mechanism for the allosteric regulation of phosphodiesterase 2A deduced from the X-ray structure of a near full-length construct
-
10.1073/pnas.0907635106. 19828435
-
Mechanism for the allosteric regulation of phosphodiesterase 2A deduced from the X-ray structure of a near full-length construct. J Pandit MD Forman KF Fennell KS Dillman FS Menniti, Proc Natl Acad Sci U.S.A 2009 106 43 18225 18230 10.1073/pnas.0907635106 19828435
-
(2009)
Proc Natl Acad Sci U.S.A
, vol.106
, Issue.43
, pp. 18225-18230
-
-
Pandit, J.1
Forman, M.D.2
Fennell, K.F.3
Dillman, K.S.4
Menniti, F.S.5
-
15
-
-
66349083528
-
Structural basis for cAMP-mediated allosteric control of the catabolite activator protein
-
10.1073/pnas.0900595106. 19359484
-
Structural basis for cAMP-mediated allosteric control of the catabolite activator protein. N Popovych S-R Tzeng M Tonelli RH Ebright CG Kalodimos, Proc Natl Acad Sci U.S.A 2009 106 17 6927 6932 10.1073/pnas.0900595106 19359484
-
(2009)
Proc Natl Acad Sci U.S.A
, vol.106
, Issue.17
, pp. 6927-6932
-
-
Popovych, N.1
Tzeng, S.-R.2
Tonelli, M.3
Ebright, R.H.4
Kalodimos, C.G.5
-
16
-
-
28444453011
-
A Network Representation of Protein Structures: Implications for Protein Stability
-
10.1529/biophysj.105.064485. 16150969
-
A Network Representation of Protein Structures: Implications for Protein Stability. KV Brinda S Vishveshwara, Biophys J 2005 89 4159 4170 10.1529/biophysj.105.064485 16150969
-
(2005)
Biophys J
, vol.89
, pp. 4159-4170
-
-
Brinda, K.V.1
Vishveshwara, S.2
-
17
-
-
3042526144
-
Determinants of quaternary association in legume lectins
-
10.1110/ps.04651004. 15215518
-
Determinants of quaternary association in legume lectins. KV Brinda N Mitra A Surolia S Vishveshwara, Protein Science 2004 13 10.1110/ps.04651004 15215518
-
(2004)
Protein Science
, vol.13
-
-
Brinda, K.V.1
Mitra, N.2
Surolia, A.3
Vishveshwara, S.4
-
18
-
-
29244487908
-
Oligomeric protein structure networks: Insights into protein-protein interactions
-
10.1186/1471-2105-6-296. 16336694
-
Oligomeric protein structure networks: Insights into protein-protein interactions. KV Brinda S Vishveshwara, BMC Bioinformatics 2005 6 10.1186/1471-2105-6-296 16336694
-
(2005)
BMC Bioinformatics
, vol.6
-
-
Brinda, K.V.1
Vishveshwara, S.2
-
19
-
-
41149104308
-
Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play
-
10.1016/j.jmb.2008.02.034. 18353365
-
Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play. C-J Tsai A del Sol R Nussinov, J Mol Biol 2008 378 1 11 10.1016/j.jmb.2008.02.034 18353365
-
(2008)
J Mol Biol
, vol.378
, pp. 1-11
-
-
Tsai, C.-J.1
Del Sol, A.2
Nussinov, R.3
-
20
-
-
35648944297
-
A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis
-
10.1073/pnas.0704459104. 17898174
-
A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis. A Ghosh S Vishveshwara, Proc Natl Acad Sci U.S.A 2007 104 15711 15716 10.1073/pnas. 0704459104 17898174
-
(2007)
Proc Natl Acad Sci U.S.A
, vol.104
, pp. 15711-15716
-
-
Ghosh, A.1
Vishveshwara, S.2
-
21
-
-
55249123363
-
Variations in Clique and Community Patterns in Protein Structures during Allosteric Communication: Investigation of Dynamically Equilibrated Structures of Methionyl tRNA Synthetase Complexes
-
10.1021/bi8007559. 18842003
-
Variations in Clique and Community Patterns in Protein Structures during Allosteric Communication: Investigation of Dynamically Equilibrated Structures of Methionyl tRNA Synthetase Complexes. A Ghosh S Vishveshwara, Biochemistry 2008 47 11398 11407 10.1021/bi8007559 18842003
-
(2008)
Biochemistry
, vol.47
, pp. 11398-11407
-
-
Ghosh, A.1
Vishveshwara, S.2
-
22
-
-
33745052090
-
Simulating the Effect of DNA Polymerase Mutations on Transition-State Energetics and Fidelity: Evaluating Amino Acid Group Contribution and Allosteric Coupling for Ionized Residues in Human Pol
-
10.1021/bi060147o. 16752894
-
Simulating the Effect of DNA Polymerase Mutations on Transition-State Energetics and Fidelity: Evaluating Amino Acid Group Contribution and Allosteric Coupling for Ionized Residues in Human Pol. Y Xiang P Oelschlaeger J Florian MF Goodman A Warshel, Biochemistry 2006 45 23 7036 7048 10.1021/bi060147o 16752894
-
(2006)
Biochemistry
, vol.45
, Issue.23
, pp. 7036-7048
-
-
Xiang, Y.1
Oelschlaeger, P.2
Florian, J.3
Goodman, M.F.4
Warshel, A.5
-
23
-
-
77949907106
-
Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks
-
Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks. M Bhattacharyya A Ghosh P Hansia S Vishveshwara, Proteins 2010 78 3 506 517
-
(2010)
Proteins
, vol.78
, Issue.3
, pp. 506-517
-
-
Bhattacharyya, M.1
Ghosh, A.2
Hansia, P.3
Vishveshwara, S.4
-
24
-
-
34548503623
-
The quorum sensing molecule autoinducer 2 regulates motility and flageller morphogenesis in helicobacter pylori
-
10.1128/JB.00246-07. 17586631
-
The quorum sensing molecule autoinducer 2 regulates motility and flageller morphogenesis in helicobacter pylori. BA Rader SR Campagna MF Semmelhack BL Bassler K Guillemin, J. Bacteriol. 2007 189 6109 6117 10.1128/JB.00246-07 17586631
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6109-6117
-
-
Rader, B.A.1
Campagna, S.R.2
Semmelhack, M.F.3
Bassler, B.L.4
Guillemin, K.5
-
25
-
-
17844389564
-
Making 'sense' of metabolism: Autoinducer-2, LuxS and pathogenic bacteria
-
10.1038/nrmicro1146. 15864263
-
Making 'sense' of metabolism: autoinducer-2, LuxS and pathogenic bacteria. A Vendeville K Winzer K Heurlier CM Tang KR Hardie, Nature reviews 2005 3 383 396 10.1038/nrmicro1146 15864263
-
(2005)
Nature Reviews
, vol.3
, pp. 383-396
-
-
Vendeville, A.1
Winzer, K.2
Heurlier, K.3
Tang, C.M.4
Hardie, K.R.5
-
27
-
-
0037676088
-
LuxS quorum sensing: More than just a numbers game
-
10.1016/S1369-5274(03)00028-6. 12732311
-
LuxS quorum sensing: more than just a numbers game. KB Xavier BL Bassler, Current Opinion in Microbiology 2003 6 191 197 10.1016/S1369-5274(03)00028-6 12732311
-
(2003)
Current Opinion in Microbiology
, vol.6
, pp. 191-197
-
-
Xavier, K.B.1
Bassler, B.L.2
-
28
-
-
4644356394
-
Mechanism of action of S-ribosylhomocysteinase (LuxS)
-
10.1016/j.cbpa.2004.08.003. 15450491
-
Mechanism of action of S-ribosylhomocysteinase (LuxS). D Pei J Zhu, Current Opinion in Chemical Biology 2004 8 492 497 10.1016/j.cbpa.2004.08.003 15450491
-
(2004)
Current Opinion in Chemical Biology
, vol.8
, pp. 492-497
-
-
Pei, D.1
Zhu, J.2
-
29
-
-
62549108212
-
Functional correlation of bacterial LuxS with their quaternary associations: Interface analysis of the structure networks
-
10.1186/1472-6807-9-8. 19243584
-
Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks. M Bhattacharyya S Vishveshwara, BMC Struct.Biol. 2009 9 8 10.1186/1472-6807-9-8 19243584
-
(2009)
BMC Struct.Biol.
, vol.9
, pp. 8
-
-
Bhattacharyya, M.1
Vishveshwara, S.2
-
30
-
-
34248394606
-
-
University of California, San Fransisco
-
AMBER9. DA Case TA Darden TE Cheatham III CL Simmerling J Wang RE Duke R Luo KM Merz DA Pearlman M Crowley RC Walker W Zhang B Wang S Hayik A Roitberg G Seabra KF Wong F Paesani X Wu S Brozell V Tsui H Gohlke L Yang C Tan J Mongan V Hornak G Cui P Beroza DH Mathews C Schafmeister WS Ross PA Kollman, University of California, San Fransisco 2006
-
(2006)
AMBER9
-
-
Case, D.A.1
Darden, T.A.2
Cheatham III, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Pearlman, D.A.9
Crowley, M.10
Walker, R.C.11
Zhang, W.12
Wang, B.13
Hayik, S.14
Roitberg, A.15
Seabra, G.16
Wong, K.F.17
Paesani, F.18
Wu, X.19
Brozell, S.20
Tsui, V.21
Gohlke, H.22
Yang, L.23
Tan, C.24
Mongan, J.25
Hornak, V.26
Cui, G.27
Beroza, P.28
Mathews, D.H.29
Schafmeister, C.30
Ross, W.S.31
Kollman, P.A.32
more..
-
31
-
-
0032922174
-
A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat
-
10217454
-
A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat. TE Cheatham III P Cieplak PA Kollman, J Biomol Struct Dyn 1999 16 845 862 10217454
-
(1999)
J Biomol Struct Dyn
, vol.16
, pp. 845-862
-
-
Cheatham III, T.E.1
Cieplak, P.2
Kollman, P.A.3
-
32
-
-
0034990508
-
A structural genomics approach to the study of quorum sensing: Crystal structures of three LuxS orthologs
-
10.1016/S0969-2126(01)00613-X. 11435117
-
A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs. HA Lewis EB Furlong B Laubert GA Eroshkina Y Batiyenko JM Adams MG Bergseid CD Marsh TS Peat WE Sanderson, Structure 2001 9 527 537 10.1016/S0969-2126(01)00613-X 11435117
-
(2001)
Structure
, vol.9
, pp. 527-537
-
-
Lewis, H.A.1
Furlong, E.B.2
Laubert, B.3
Eroshkina, G.A.4
Batiyenko, Y.5
Adams, J.M.6
Bergseid, M.G.7
Marsh, C.D.8
Peat, T.S.9
Sanderson, W.E.10
-
33
-
-
0035850667
-
The 1.2 A Structure of a Novel Quorum-Sensing Protein, Bacillus subtilis LuxS
-
10.1006/jmbi.2001.5027. 11601850
-
The 1.2 A Structure of a Novel Quorum-Sensing Protein, Bacillus subtilis LuxS. SN Ruzheinikov SK Das SE Sedelnikova A Hartley SJ Foster MJ Horsburgh AG Cox CW McCleod A Mekhalfia GM Blackburn, J Mol Biol 2001 313 111 122 10.1006/jmbi.2001.5027 11601850
-
(2001)
J Mol Biol
, vol.313
, pp. 111-122
-
-
Ruzheinikov, S.N.1
Das, S.K.2
Sedelnikova, S.E.3
Hartley, A.4
Foster, S.J.5
Horsburgh, M.J.6
Cox, A.G.7
McCleod, C.W.8
Mekhalfia, A.9
Blackburn, G.M.10
-
34
-
-
14844340465
-
Crystal structure of S-ribosylhomocysteinase (LuxS) in complex with a catalytic 2-ketone intermediate
-
10.1021/bi0477384. 15751951
-
Crystal structure of S-ribosylhomocysteinase (LuxS) in complex with a catalytic 2-ketone intermediate. R Rajan J Zhu X Hu D Pei CE Bell, Biochemistry 2005 44 3745 3753 10.1021/bi0477384 15751951
-
(2005)
Biochemistry
, vol.44
, pp. 3745-3753
-
-
Rajan, R.1
Zhu, J.2
Hu, X.3
Pei, D.4
Bell, C.E.5
-
35
-
-
0033578690
-
Identification of side-chain clusters in protein structures by a graph spectral method
-
10.1006/jmbi.1999.3058. 10493887
-
Identification of side-chain clusters in protein structures by a graph spectral method. N Kannan S Vishveshwara, J Mol Biol 1999 292 441 464 10.1006/jmbi.1999.3058 10493887
-
(1999)
J Mol Biol
, vol.292
, pp. 441-464
-
-
Kannan, N.1
Vishveshwara, S.2
-
36
-
-
26844503957
-
Insights into the quaternary association of proteins through structure graphs: A case study of lectins
-
10.1042/BJ20050434. 16173917
-
Insights into the quaternary association of proteins through structure graphs: A case study of lectins. KV Brinda A Surolia S Vishveshwara, Biochem J 2005 391 1 15 10.1042/BJ20050434 16173917
-
(2005)
Biochem J
, vol.391
, pp. 1-15
-
-
Brinda, K.V.1
Surolia, A.2
Vishveshwara, S.3
-
37
-
-
23444454552
-
The Amber biomolecular simulation programs
-
10.1002/jcc.20290. 16200636
-
The Amber biomolecular simulation programs. DA Case TE Cheatham III T Darden H Gohlke R Luo KM Merz Jr A Onufriev C Simmerling B Wang RJ Woods, J Comput Chem 2005 26 16 1668 1688 10.1002/jcc.20290 16200636
-
(2005)
J Comput Chem
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
38
-
-
72949085966
-
Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks
-
10.1039/b903807h. 19763332
-
Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks. P Hansia A Ghosh S Vishveshwara, Mol Biosyst 2009 5 1860 1872 10.1039/b903807h 19763332
-
(2009)
Mol Biosyst
, vol.5
, pp. 1860-1872
-
-
Hansia, P.1
Ghosh, A.2
Vishveshwara, S.3
-
39
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
10.1038/nature03607. 15944704
-
Uncovering the overlapping community structure of complex networks in nature and society. G Palla I Derenyi I Farkas T Vicsek, Nature 2005 435 814 818 10.1038/nature03607 15944704
-
(2005)
Nature
, vol.435
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
40
-
-
33645830948
-
CFinder: Locating cliques and overlapping modules in biological networks
-
10.1093/bioinformatics/btl039. 16473872
-
CFinder: locating cliques and overlapping modules in biological networks. B Adamcsek G Palla IJ Farkas I Derenyi T Vicsek, Bioinformatics 2006 22 1021 1023 10.1093/bioinformatics/btl039 16473872
-
(2006)
Bioinformatics
, vol.22
, pp. 1021-1023
-
-
Adamcsek, B.1
Palla, G.2
Farkas, I.J.3
Derenyi, I.4
Vicsek, T.5
-
41
-
-
0027441950
-
Essential dynamics of proteins
-
10.1002/prot.340170408
-
Essential dynamics of proteins. A Amadei ABM Linssen HJC Berendsen, Proteins: Structure, Function, and Genetics 1993 17 412 425 10.1002/prot. 340170408
-
(1993)
Proteins: Structure, Function, and Genetics
, vol.17
, pp. 412-425
-
-
Amadei, A.1
Linssen, A.B.M.2
Berendsen, H.J.C.3
-
42
-
-
0029586726
-
Essential dynamics of the cellular retinol-binding protein evidence for ligand-induced conformational changes
-
10.1093/protein/8.11.1129. 8819978
-
Essential dynamics of the cellular retinol-binding protein evidence for ligand-induced conformational changes. DMF van Aalten JBC Findlay A Amadei HJC Berendsen, Protein. Eng 1995 8 11 1129 1135 10.1093/protein/8.11.1129 8819978
-
(1995)
Protein. Eng
, vol.8
, Issue.11
, pp. 1129-1135
-
-
Van Aalten, D.M.F.1
Findlay, J.B.C.2
Amadei, A.3
Berendsen, H.J.C.4
-
43
-
-
17844406143
-
Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: An extended phase space sampling by molecular dynamics simulations in explicit water
-
10.1002/prot.20427
-
Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: An extended phase space sampling by molecular dynamics simulations in explicit water. I Daidone A Amadei A Di Nola, Proteins: Structure, Function, and Bioinformatics 2005 59 510 518 10.1002/prot.20427
-
(2005)
Proteins: Structure, Function, and Bioinformatics
, vol.59
, pp. 510-518
-
-
Daidone, I.1
Amadei, A.2
Di Nola, A.3
-
44
-
-
51549100980
-
A shorter peptide model from staphylococcal nuclease for the folding-unfolding equilibrium of a [beta]-hairpin shows that unfolded state has significant contribution from compact conformational states
-
10.1016/j.jsb.2008.06.003. 18602478
-
A shorter peptide model from staphylococcal nuclease for the folding-unfolding equilibrium of a [beta]-hairpin shows that unfolded state has significant contribution from compact conformational states. S Patel YU Sasidhar, J Struct Biol 2008 164 60 74 10.1016/j.jsb.2008.06.003 18602478
-
(2008)
J Struct Biol
, vol.164
, pp. 60-74
-
-
Patel, S.1
Sasidhar, Y.U.2
-
45
-
-
0037472109
-
S-Ribosylhomocysteinase (LuxS) Is a Mononuclear Iron Protein
-
10.1021/bi034289j. 12705835
-
S-Ribosylhomocysteinase (LuxS) Is a Mononuclear Iron Protein. J Zhu X Hu A Wavreille J Park P Pei, Biochemistry 2003 42 4717 4726 10.1021/bi034289j 12705835
-
(2003)
Biochemistry
, vol.42
, pp. 4717-4726
-
-
Zhu, J.1
Hu, X.2
Wavreille, A.3
Park, J.4
Pei, P.5
-
46
-
-
0242299248
-
Catalytic Mechanism of S-Ribosylhomocysteinase (LuxS): Direct Observation of Ketone Intermediates by 13C NMR Spectroscopy
-
10.1021/ja0369663. 14583032
-
Catalytic Mechanism of S-Ribosylhomocysteinase (LuxS): Direct Observation of Ketone Intermediates by 13C NMR Spectroscopy. J Zhu X Hu E Dizin D Pei, J Am Chem Soc 2003 125 44 13379 13381 10.1021/ja0369663 14583032
-
(2003)
J Am Chem Soc
, vol.125
, Issue.44
, pp. 13379-13381
-
-
Zhu, J.1
Hu, X.2
Dizin, E.3
Pei, D.4
-
47
-
-
3543138871
-
Catalytic mechanism of S-ribosylhomocysteinase (LuxS): Stereochemical course and kinetic isotope effect of proton transfer reactions
-
10.1021/bi0491088. 15287744
-
Catalytic mechanism of S-ribosylhomocysteinase (LuxS): stereochemical course and kinetic isotope effect of proton transfer reactions. J Zhu R Patel D Pei, Biochemistry 2004 43 10166 10172 10.1021/bi0491088 15287744
-
(2004)
Biochemistry
, vol.43
, pp. 10166-10172
-
-
Zhu, J.1
Patel, R.2
Pei, D.3
-
48
-
-
61749084462
-
Probing the Catalytic Mechanism of S-Ribosylhomocysteinase (LuxS) with Catalytic Intermediates and Substrate Analogues
-
10.1021/ja808206w
-
Probing the Catalytic Mechanism of S-Ribosylhomocysteinase (LuxS) with Catalytic Intermediates and Substrate Analogues. B Gopishetty J Zhu R Rajan AJ Sobczak SF Wnuk CE Bell D Pei, J Am Chem Soc 2008 131 3 1243 1250 10.1021/ja808206w
-
(2008)
J Am Chem Soc
, vol.131
, Issue.3
, pp. 1243-1250
-
-
Gopishetty, B.1
Zhu, J.2
Rajan, R.3
Sobczak, A.J.4
Wnuk, S.F.5
Bell, C.E.6
Pei, D.7
|